11312
Biological Samples Database (BSD)
Biological Sample Data
Data Set
Published / External
4901
PAN Biological Sample Database -- Hard Parts Data
Project
In Work
The Biological Sampling Database (BSD) is an Oracle relational database that is maintained at the NMFS Panama City Laboratory and NOAA NMFS Beaufort Laboratory. Data set includes port samples of reef fish species collected from commercial and recreational fishery landings in the U.S. South Atlantic (NC - FL Keys). The data set serves as an inventory of samples stored at the NMFS Beaufort Laboratory as well as final processed data. Information that may be inlcuded for each sample is trip level information, species, size meansurements, age, sex and reproductive data.
To investigate the biology and life history of economically important fisheries such as reef fish.
Theme
Hard Parts
Theme
TIP
Theme
Trip Interview Program
Theme
bluefin tuna
Theme
gonads
Theme
observer samples
Theme
otoliths
Theme
scales
Theme
spines
Theme
tuna
Southeast Fisheries Science Center
Miami
FL
USA
Location Of The Main Office Of The South East Fisheries Science Center
Data Set
Database
Daily
Table (digital)
N/A
N/A
N/A
Data Steward
2010
Person
Barnett, Beverly K
beverly.barnett@noaa.gov
3500 Delwood Beach Road
Panama City
FL
32408-7403
United States
850-234-6541 x 232
850-235-3559
Data Steward
1992
2023-07
Person
Potts, Jennifer C
jennifer.potts@noaa.gov
101 Pivers Island Road
Beaufort
NC
28516
252-728-8715
252-728-8784
Contact by email preferred.
Distributor
2010
Organization
Panama City Laboratory
PANLAB
3500 Delwood Beach Road
Panama City
FL
32408
850.234.6541
http://www.sefsc.noaa.gov/labs/panama/
Metadata Contact
1992
2023-07
Person
Potts, Jennifer C
jennifer.potts@noaa.gov
101 Pivers Island Road
Beaufort
NC
28516
252-728-8715
252-728-8784
Contact by email preferred.
Point of Contact
2010
Person
Williams, Erik
erik.williams@noaa.gov
101 Pivers Island Rd
Beaufort
NC
28516
252-728-8603
252-728-8784
Contact by email preferred.
Point of Contact
2010
Person
Barnett, Beverly K
beverly.barnett@noaa.gov
3500 Delwood Beach Road
Panama City
FL
32408-7403
United States
850-234-6541 x 232
850-235-3559
Point of Contact
2010
2023-07
Person
Potts, Jennifer C
jennifer.potts@noaa.gov
101 Pivers Island Road
Beaufort
NC
28516
252-728-8715
252-728-8784
Ground Condition
-97
-74
37
24
Please note that these boundaries are not all-inclusive as shown on map and should only be inclusive of fisheries in the U.S. Gulf of Mexico (Texas, Louisiana, Mississippi, Alabama, and Florida) and Atlantic Ocean waters from North Carolina to Florida. Our data sets do not include fisheries in the Bahamas.
Continuing
2010
-82
-71
36
24
Gulf Of Mexico And U.S. South Atlantic Ocean
Continuing
1992
Sensitive
Data cannot be released to the general public.
Data are available only to individuals who have signed confidentiality agreements with NMFS.
Data are accessed only from secure SEFSC servers and storage devices.
Waiver Needed
Please respect confidentiality rules and cite appropriately.
None.
Please cite appropriately.
Oracle Database -- Schema BSD.
There are multiple sampling programs (federal, state, etc.) whose biological samples and corresponding data are received and housed in the Bio-Sample Database. The data corresponding to the biological samples are received through linkage to TIP and uploaded data through a template. The digital data are verified for receipt and accuracy with the biological samples. Any discrepancies between the digital data and any information written on the biological samples are noted, and the sampling program is notified, and a request is made for clarification. Data are edited only when the sampling program advises of the correction and then the verified and corrected data is received into BSD.
No
0
Yes
Yes
No
365
This data is currently wavered under the current NOAA guidelines for relational databases.
To Be Determined
365
The data resides on a secure database server only accessible through the NMFS network requiring separate multi-factor authentication for both network and database access.
1
The BSD is linked directly to the SEFSC TIP database (Oracle). When samples are received from TIP port agents, the BSD retrieves the electronic data from TIP by interview ID. Other data sources than TIP can also be uploaded to the BSD by use of an Upload Template. The electronic data received from another source (e.g. Florida FWCC) are formatted to match TIP codes and then uploaded to BSD. All physical samples are verifiied against the electronic data before upload.
2009-10-15
Gloeckner, David
How are species logs proofed?
Approximately February 1st of each year, we print a copy of each Species Log (titled: Species Proofing Log) showing samples that were received from the previous year. For example: 2008 RS Proofing Log would consist of all red snapper collections that were logged in for 2008 (i.e., PC collection #s 1 ? 450). The Species Proofing Logs consist of all data that is recorded on the Species Logs (i.e., PC collection #, date, source, source #, state, location, collector, # of gonads, # of otoliths, mode, gear, and collection comments). All Species Logs are placed in a binder so that PCLAB personnel can sign out one species at a time to be proofed. PCLAB personnel will initial the `sign out? sheet, annotate the `proofing start date?, and when proofing is completed for a particular species, they will annotate the `proofing end date? on the sign out sheet. PCLAB personnel will compare the data from the data sheet (taken to complete the Species Log) to the data entered in the computer (Species Proofing Log) and make any corrections that may be necessary.
Approximately April 1st of each year, we will look at each Species Log showing samples that were received from the previous year to see if any collections have been received after the first Species Proofing Log sheet was printed. This ensures that all collections thus far received for the previous year will be proofed and will be accounted for when the Annual Report of Samples Received at PCLAB is completed (due date for this report is June 1st of each year).
gov.noaa.nmfs.inport:11312
Lee Weinberger
2011-09-27T10:39:14
Lee Weinberger
2023-08-02T11:53:34
2022-06-03
Southeast Fisheries Science Center
SEFSC
75 Virginia Beach Drive
Miami
FL
33149
USA
(305)361-5761
www.sefsc.noaa.gov
8:00 a.m. - 4:30 p.m. EST
1001
Public
No
2022-06-03
1 Year
2023-06-03