Biological Samples Database (BSD)
Southeast Fisheries Science Center
Data Set
(DS)
| ID: 11312
| Published / External
Created: 2011-09-27
|
Last Modified: 2023-08-02
Project (PRJ) | ID: 4901
ID: 11312
Data Set (DS)
* Discovery• First Pass
» Metadata Rubric
Item Identification
| * » Title | Biological Samples Database (BSD) |
|---|---|
| Short Name | Biological Sample Data |
| * Status | In Work |
| Creation Date | |
| Revision Date | |
| • Publication Date | |
| * » Abstract |
The Biological Sampling Database (BSD) is an Oracle relational database that is maintained at the NMFS Panama City Laboratory and NOAA NMFS Beaufort Laboratory. Data set includes port samples of reef fish species collected from commercial and recreational fishery landings in the U.S. South Atlantic (NC - FL Keys). The data set serves as an inventory of samples stored at the NMFS Beaufort Laboratory as well as final processed data. Information that may be inlcuded for each sample is trip level information, species, size meansurements, age, sex and reproductive data. |
| * Purpose |
To investigate the biology and life history of economically important fisheries such as reef fish. |
| Notes | |
| Other Citation Details | |
| • Supplemental Information | |
| DOI (Digital Object Identifier) | |
| DOI Registration Authority | |
| DOI Issue Date |
Keywords
Theme Keywords
| Thesaurus | Keyword |
|---|---|
| None | bluefin tuna |
| None | gonads |
| None | Hard Parts |
| None | observer samples |
| None | otoliths |
| None | scales |
| None | spines |
| None | TIP |
| None | Trip Interview Program |
| None | tuna |
Temporal Keywords
| Thesaurus | Keyword |
|---|---|
* Spatial Keywords
| Thesaurus | Keyword |
|---|---|
Stratum Keywords
| Thesaurus | Keyword |
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Instrument Keywords
| Thesaurus | Keyword |
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Platform Keywords
| Thesaurus | Keyword |
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Physical Location
| • » Organization | Southeast Fisheries Science Center |
|---|---|
| • » City | Miami |
| • » State/Province | FL |
| • Country | USA |
| • » Location Description |
Location Of The Main Office Of The South East Fisheries Science Center |
Data Set Information
| * Data Set Scope Code | Data Set |
|---|---|
| • Data Set Type | Database |
| • Maintenance Frequency | Daily |
| Maintenance Note | |
| » Data Presentation Form | Table (digital) |
| • Entity Attribute Overview | |
| Entity Attribute Detail Citation | |
| Entity Attribute Detail URL | |
| Distribution Liability | |
| Data Set Credit |
Support Roles
| * » Support Role | Data Steward |
|---|---|
| * » Date Effective From | 2010 |
| Date Effective To | |
| Person | Barnett, Beverly K |
| Address |
3500 Delwood Beach Road Panama City, FL 32408-7403 United States |
| Email Address | beverly.barnett@noaa.gov |
| Phone | 850-234-6541 x 232 |
| Fax | 850-235-3559 |
| Mobile | |
| URL | |
| Business Hours | |
| Contact Instructions |
| * » Support Role | Data Steward |
|---|---|
| * » Date Effective From | 1992 |
| Date Effective To | 2023-07 |
| Person | Potts, Jennifer C |
| Address |
101 Pivers Island Road Beaufort, NC 28516 |
| Email Address | jennifer.potts@noaa.gov |
| Phone | 252-728-8715 |
| Fax | 252-728-8784 |
| Mobile | |
| URL | |
| Business Hours | |
| Contact Instructions |
Contact by email preferred. |
| * » Support Role | Distributor |
|---|---|
| * » Date Effective From | 2010 |
| Date Effective To | |
| Organization | Panama City Laboratory (PANLAB) |
| Address |
3500 Delwood Beach Road Panama City, FL 32408 |
| Email Address | |
| Phone | 850.234.6541 |
| Fax | |
| Mobile | |
| URL | http://www.sefsc.noaa.gov/labs/panama/ |
| Business Hours | |
| Contact Instructions |
| * » Support Role | Metadata Contact |
|---|---|
| * » Date Effective From | 1992 |
| Date Effective To | 2023-07 |
| Person | Potts, Jennifer C |
| Address |
101 Pivers Island Road Beaufort, NC 28516 |
| Email Address | jennifer.potts@noaa.gov |
| Phone | 252-728-8715 |
| Fax | 252-728-8784 |
| Mobile | |
| URL | |
| Business Hours | |
| Contact Instructions |
Contact by email preferred. |
| * » Support Role | Point of Contact |
|---|---|
| * » Date Effective From | 2010 |
| Date Effective To | |
| Person | Barnett, Beverly K |
| Address |
3500 Delwood Beach Road Panama City, FL 32408-7403 United States |
| Email Address | beverly.barnett@noaa.gov |
| Phone | 850-234-6541 x 232 |
| Fax | 850-235-3559 |
| Mobile | |
| URL | |
| Business Hours | |
| Contact Instructions |
| * » Support Role | Point of Contact |
|---|---|
| * » Date Effective From | 2010 |
| Date Effective To | 2023-07 |
| Person | Potts, Jennifer C |
| Address |
101 Pivers Island Road Beaufort, NC 28516 |
| Email Address | jennifer.potts@noaa.gov |
| Phone | 252-728-8715 |
| Fax | 252-728-8784 |
| Mobile | |
| URL | |
| Business Hours | |
| Contact Instructions |
| * » Support Role | Point of Contact |
|---|---|
| * » Date Effective From | 2010 |
| Date Effective To | |
| Person | Williams, Erik |
| Address |
101 Pivers Island Rd Beaufort, NC 28516 |
| Email Address | erik.williams@noaa.gov |
| Phone | 252-728-8603 |
| Fax | 252-728-8784 |
| Mobile | |
| URL | |
| Business Hours | |
| Contact Instructions |
Contact by email preferred. |
| * » Support Role | |
|---|---|
| * » Date Effective From | |
| Date Effective To | |
| * » Contact | |
| * Contact Instructions |
| * » Support Role | |
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| * » Date Effective From | |
| Date Effective To | |
| * » Contact | |
| * Contact Instructions |
| * » Support Role | |
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| * » Date Effective From | |
| Date Effective To | |
| * » Contact | |
| * Contact Instructions |
Extents
| Currentness Reference | Ground Condition |
|---|
Extent Group 1
| Extent Description |
|---|
Extent Group 1 / Geographic Area 1
| * » W° Bound | -97 |
|---|---|
| * » E° Bound | -74 |
| * » N° Bound | 37 |
| * » S° Bound | 24 |
| * » Description |
Please note that these boundaries are not all-inclusive as shown on map and should only be inclusive of fisheries in the U.S. Gulf of Mexico (Texas, Louisiana, Mississippi, Alabama, and Florida) and Atlantic Ocean waters from North Carolina to Florida. Our data sets do not include fisheries in the Bahamas. |
Extent Group 1 / Vertical Extent
| EPSG Code | |
|---|---|
| Vertical Minimum | |
| Vertical Maximum |
Extent Group 1 / Time Frame 1
| * » Time Frame Type | Continuing |
|---|---|
| * » Start | 2010 |
| End | |
| Alternate Start As Of Info | |
| Alternate End As Of Info | |
| Description |
Extent Group 2
| Extent Description |
|---|
Extent Group 2 / Geographic Area 1
| * » W° Bound | -82 |
|---|---|
| * » E° Bound | -71 |
| * » N° Bound | 36 |
| * » S° Bound | 24 |
| * » Description |
Gulf Of Mexico And U.S. South Atlantic Ocean |
Extent Group 2 / Vertical Extent
| EPSG Code | |
|---|---|
| Vertical Minimum | |
| Vertical Maximum |
Extent Group 2 / Time Frame 1
| * » Time Frame Type | Continuing |
|---|---|
| * » Start | 1992 |
| End | |
| Alternate Start As Of Info | |
| Alternate End As Of Info | |
| Description |
Spatial Information
Spatial Resolution
| Angular Distance | |
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| Level of Detail Description |
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Spatial Representation
| Grid Representation Used? | |
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| Vector Representation Used? | |
| Text / Table Representation Used? | |
| TIN Representation Used? | |
| Stereo Model Representation Used? | |
| Video Representation Used? |
Grid Representation
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Vector Representation
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| Surface Object Present? | |
| Surface Object Count |
Reference Systems
Reference System
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Horizontal Resolution |
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Vertical Resolution |
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Access Information
| Data License | |
|---|---|
| Data License URL | |
| Data License Statement | |
| * » Security Class | Sensitive |
| * Security Classification System | |
| Security Handling Description |
Data cannot be released to the general public. |
| • Data Access Policy |
Data are available only to individuals who have signed confidentiality agreements with NMFS. |
| » Data Access Procedure |
Data are accessed only from secure SEFSC servers and storage devices. |
| • » Data Access Constraints |
Waiver Needed |
| • Data Use Constraints |
Please respect confidentiality rules and cite appropriately. |
| Metadata Access Constraints |
None. |
| Metadata Use Constraints |
Please cite appropriately. |
Distribution Information
| Start Date | |
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| End Date | |
| » Download URL | |
| Distributor | |
| File Name | |
| Description | |
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| Application Version | |
| Compression | |
| Review Status |
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Archive Information
| Location | |
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| File Identifier | |
| File Name | |
| URL | |
| Description | |
| DOI | |
| Archive Date | |
| Archive Update Frequency |
| Location | |
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URLs
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| URL | |
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Activity Log
| Activity Time | |
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| Responsible Party | |
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Issues
| Issue Date | |
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| Issue |
Technical Environment
| Description |
Oracle Database -- Schema BSD. |
|---|
Data Quality
| Representativeness | |
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| Accuracy | |
| Analytical Accuracy | |
| Horizontal Positional Accuracy | |
| Vertical Positional Accuracy | |
| Quantitation Limits | |
| Bias | |
| Comparability | |
| Completeness Measure | |
| Precision | |
| Analytical Precision | |
| Field Precision | |
| Sensitivity | |
| Detection Limit | |
| Completeness Report | |
| Conceptual Consistency | |
| » Quality Control Procedures Employed |
There are multiple sampling programs (federal, state, etc.) whose biological samples and corresponding data are received and housed in the Bio-Sample Database. The data corresponding to the biological samples are received through linkage to TIP and uploaded data through a template. The digital data are verified for receipt and accuracy with the biological samples. Any discrepancies between the digital data and any information written on the biological samples are noted, and the sampling program is notified, and a request is made for clarification. Data are edited only when the sampling program advises of the correction and then the verified and corrected data is received into BSD. |
Data Management
| » Have Resources for Management of these Data Been Identified? | No |
|---|---|
| » Approximate Percentage of Budget for these Data Devoted to Data Management | 0 |
| » Do these Data Comply with the Data Access Directive? | Yes |
| » Is Access to the Data Limited Based on an Approved Waiver? | Yes |
| » If Distributor (Data Hosting Service) is Needed, Please Indicate | No |
| » Approximate Delay Between Data Collection and Dissemination | 365 |
| » If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed |
This data is currently wavered under the current NOAA guidelines for relational databases. |
| » Actual or Planned Long-Term Data Archive Location | To Be Determined |
| » If To Be Determined, Unable to Archive, or No Archiving Intended, Explain |
The archival process is currently under development. |
| » Approximate Delay Between Data Collection and Archiving | 365 |
| » How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive? |
The data resides on a secure database server only accessible through the NMFS network requiring separate multi-factor authentication for both network and database access. |
Lineage
| » Lineage Statement |
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Sources
| Citation Title | |
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| Contact Role Type | |
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| Contact Name | |
| Publish Date | |
| Extent Type | |
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| Citation URL | |
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| Citation URL Description | |
| Scale Denominator |
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| Citation URL | |
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| Citation URL Description | |
| Scale Denominator |
Process Steps
| Process Step Number | 1 |
|---|---|
| » Description |
The BSD is linked directly to the SEFSC TIP database (Oracle). When samples are received from TIP port agents, the BSD retrieves the electronic data from TIP by interview ID. Other data sources than TIP can also be uploaded to the BSD by use of an Upload Template. The electronic data received from another source (e.g. Florida FWCC) are formatted to match TIP codes and then uploaded to BSD. All physical samples are verifiied against the electronic data before upload. |
| Process Date/Time | |
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| Email Address | |
| Source |
| Process Step Number | |
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| » Description | |
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| Process Contact | |
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| Email Address | |
| Source |
| Process Step Number | |
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| » Description | |
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| Email Address | |
| Source |
| Process Step Number | |
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| » Description | |
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| Email Address | |
| Source |
Acquisition Information
Instruments
| Instrument Unavailable Reason |
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| Identifier | |
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| Docucomp UUID | |
| Instrument / Gear | |
| Instrument Type | |
| Description |
| Identifier | |
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| Docucomp UUID | |
| Instrument / Gear | |
| Instrument Type | |
| Description |
| Identifier | |
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| Docucomp UUID | |
| Instrument / Gear | |
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Platforms
| Platform Unavailable Reason |
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| Docucomp UUID | |||||||
| Description | |||||||
Mounted Instruments |
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Mounted Instruments |
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FAQs
| Date | 2009-10-15 00:00:00 |
|---|---|
| Author | David Gloeckner |
| Question |
How are species logs proofed? |
| Answer |
Approximately February 1st of each year, we print a copy of each Species Log (titled: Species Proofing Log) showing samples that were received from the previous year. For example: 2008 RS Proofing Log would consist of all red snapper collections that were logged in for 2008 (i.e., PC collection #s 1 ? 450). The Species Proofing Logs consist of all data that is recorded on the Species Logs (i.e., PC collection #, date, source, source #, state, location, collector, # of gonads, # of otoliths, mode, gear, and collection comments). All Species Logs are placed in a binder so that PCLAB personnel can sign out one species at a time to be proofed. PCLAB personnel will initial the `sign out? sheet, annotate the `proofing start date?, and when proofing is completed for a particular species, they will annotate the `proofing end date? on the sign out sheet. PCLAB personnel will compare the data from the data sheet (taken to complete the Species Log) to the data entered in the computer (Species Proofing Log) and make any corrections that may be necessary. Approximately April 1st of each year, we will look at each Species Log showing samples that were received from the previous year to see if any collections have been received after the first Species Proofing Log sheet was printed. This ensures that all collections thus far received for the previous year will be proofed and will be accounted for when the Annual Report of Samples Received at PCLAB is completed (due date for this report is June 1st of each year). |
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Child Items
Rubric scores updated every 15m
| Score | Type | Title |
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Related Items
| Item Type | Relationship Type | Title |
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Catalog Details
| Catalog Item ID | 11312 |
|---|---|
| Metadata Record Created By | Lee M Weinberger |
| Metadata Record Created | 2011-09-27 10:39+0000 |
| Metadata Record Last Modified By | Lee M Weinberger |
| » Metadata Record Last Modified | 2023-08-02 11:53+0000 |
| Metadata Record Published | 2022-06-03 |
| Owner Org | SEFSC |
| Metadata Publication Status | Published Externally |
| Do Not Publish? | N |
| Metadata Workflow State | Published / External |
| Metadata Last Review Date | 2022-06-03 |
| Metadata Review Frequency | 1 Year |
| Metadata Next Review Date | 2023-06-03 |
| Tags |
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