gov.noaa.nmfs.inport:17957
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Northwest Fisheries Science Center
206-860-3200
2725 Montlake Boulevard East
Seattle
WA
98112
USA
http://www.nwfsc.noaa.gov
WWW:LINK-1.0-http--link
Website
Website for this organization
information
resourceProvider
Northwest Fisheries Science Center
206-860-3200
2725 Montlake Boulevard East
Seattle
WA
98112
nmfs.nwfsc.metadata@noaa.gov
http://www.nwfsc.noaa.gov
WWW:LINK-1.0-http--link
NWFSC Home
Website listed for Northwest Fisheries Science Center
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pointOfContact
2024-02-29T00:00:00
ISO 19115-2 Geographic Information - Metadata Part 2 Extensions for imagery and gridded data
ISO 19115-2:2009(E)
Vibrio population structure - Genetic and population structure analysis of clinical and environmental Vibrio parahaemolyticus strains
Vibrio population structure (Genetic and population structure analysis of clinical and environmental Vibrio parahaemolyticus strains)
2008-05-31
creation
2019-06-05
publication
NOAA/NMFS/EDM
17957
https://www.fisheries.noaa.gov/inport/item/17957
WWW:LINK-1.0-http--link
Full Metadata Record
View the complete metadata record on InPort for more information about this dataset.
information
Strom, Mark S
206-860-3377
2725 Montlake Blvd East
Seattle
WA
98112
Mark.Strom@noaa.gov
originator
https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/datasets/dataset/4425
WWW:LINK-1.0-http--link
Vibrio population structure
NWFSC Dataset Information page. genome sequences
download
Vibrio parahaemolyticus (Vp) is a marine bacterium capable of causing severe gastroenteritis in humans, usually through the consumption of raw shellfish. Before 1995, Vp-vibriosis was sporadic world-wide and caused by a relatively heterogeneous population of the bacterium. Since then, outbreaks have become more epidemic, with foci of infections traced to seafood harvested from single or geographically-linked sites. While initial outbreaks in Asia (and later in South America and the U.S. Gulf Coast region) have been attributed to a single serotypically-related pandemic clonal complex, other serotypes have been implicated in distinct geographical areas, including the Pacific Northwest and Alaska in the U.S.
Current risk assessment models are based on the presence of the virulence-associated genes tdh and trh, yet illnesses have been attributed to tdh- and/or trh- isolates. Previous phylogenetic studies have shown that Vp, like most Vibrio spp., is a genetically diverse species, and as yet there has been no definitive conclusion as to what genes are essential for virulence. Using phenotypic, genetic, and genomic comparison methods such as Multi-Locus Sequence Typing (MLST), we are examining the hypothesis that a set of highly-virulent clones of Vp with increased pathogenic potential have recently emerged in the PNW, and determining whether the emergence can be correlated with specific environmental parameters. MLST and other genotyping analyses of clinical and environmental Vp isolates from PNW sources demonstrate the extensive patterns of diversity as seen elsewhere. However, the majority of PNW strains obtained from human infections form a distinct clonal complex separate from most environmental isolates. Interestingly, many environmental isolates obtained from PNW sources are phylogenetically related to the pandemic clonal complex, but this group has not been associated with clinical infections in the region.
Genome sequences.
Laboratory data
completed
Strom, Mark S
206-860-3377
2725 Montlake Blvd East
Seattle
WA
98112
Mark.Strom@noaa.gov
pointOfContact
Strom, Mark S
206-860-3377
2725 Montlake Blvd East
Seattle
WA
98112
Mark.Strom@noaa.gov
custodian
Vibrio
abundance
climate change
theme
NWFSC Montlake
place
DNA Sequencer
instrument
DOC/NOAA/NMFS/NWFSC > Northwest Fisheries Science Center, National Marine Fisheries Service, NOAA. U.S. Department of Commerce
dataCentre
Global Change Master Directory (GCMD) Data Center Keywords
2017-04-24
publication
8.5
Migrated from Resource Enhancement and Utilization Technologies Division
project
InPort
otherRestrictions
Cite As: Northwest Fisheries Science Center, [Date of Access]: Vibrio population structure - Genetic and population structure analysis of clinical and environmental Vibrio parahaemolyticus strains [Data Date Range], https://www.fisheries.noaa.gov/inport/item/17957.
NOAA provides no warranty, nor accepts any liability occurring from any incomplete, incorrect, or misleading data, or from any incorrect, incomplete, or misleading use of the data. It is the responsibility of the user to determine whether or not the data is suitable for the intended purpose.
otherRestrictions
Access Constraints: NA
unclassified
NOAA Data Management Plan (DMP)
NOAA/NMFS/EDM
17957
https://www.fisheries.noaa.gov/inportserve/waf/noaa/nmfs/nwfsc/dmp/pdf/17957.pdf
WWW:LINK-1.0-http--link
NOAA Data Management Plan (DMP)
NOAA Data Management Plan for this record on InPort.
information
crossReference
eng; US
oceans
Other - Genbank formatted genomes
-122.3062
-122.2962
47.6449
47.6549
NWFSC Montlake: NWFSC Montlake lab, Seattle
2008-10-01
2012-10-05
Subject to Public Access to Research Results (PARR): Yes
Peer Reviewed Publication: Vibrio population structure. publication
Northwest Fisheries Science Center
206-860-3200
2725 Montlake Boulevard East
Seattle
WA
98112
nmfs.nwfsc.metadata@noaa.gov
http://www.nwfsc.noaa.gov
WWW:LINK-1.0-http--link
NWFSC Home
Website listed for Northwest Fisheries Science Center
information
distributor
https://www.webapps.nwfsc.noaa.gov/parr/Vibrio_Population_Structure_Supplementary_material_4425.pdf
WWW:LINK-1.0-http--link
Vibrio population structure
Genetic and population structure analysis of clinical and environmental Vibrio parahaemolyticus strains
download
dataset
Accuracy
High
variety of bioinformatics-based analyses