17979 In-stream PIT detection, estuary wetlands (Columbia River Estuary Tidal Habitats) Data Set Published / External 17697 FE (Fish Ecology) Division Project Completed 2006-04-04 2017-02-16 The goal of the tidal-fluvial estuary study is to determine the estuary's contribution to the spatial structure and life history diversity of Columbia River salmon stocks and the implications for estuary restoration. The study targets salmon use of tidal-fresh habitats in the estuary from Rkm 75 to Bonneville Dam, and addresses four primary objectives: 1. Characterize the temporal and spatial distribution of Chinook salmon genetic stock groups throughout the estuary (March 2010 - March 2012). 2. Determine stock-specific habitat use, life histories, and performance of juvenile salmon in key habitat complexes to fill data gaps in the tidal fluvial reaches of the estuary (2012-2016). 3. Monitor juvenile salmon life histories and their contributions to adult returns in selected estuary tributaries, including tributary examples where tidal habitats have been restored (2012-2018). 4. Evaluate estuary restoration needs for recovery of all salmon ESUs and account for projected effects of climate change through application of a salmon life-cycle model (2011-1015). The study, funded by the U.S. Army Corps of Engineers, involves a large team of researchers organized by NOAA Fisheries, including researchers from the Oregon Health and Sciences University, University of Washington, and Washington Department of Fish and Wildlife. The study addresses critical uncertainties identified in the research, monitoring, and evaluation (RME) program for the Federal Columbia River Estuary Program (FCREP). The Estuary Program is intended to conserve and restore the estuary ecosystem to improve the performance of listed salmonid populations. Products from the tidal-fluvial study will include: 1. Descriptions of stock-specific temporal and spatial distributions of Chinook salmon throughout the estuary. 2. Estimates of variations in Chinook salmon stock composition and stock-specific growth, food habits, consumption rates, and bioenergetic efficiencies within selected tidal-fluvial habitats. 3. Estimated contributions of estuarine life histories among returning adult Chinook salmon from selected populations throughout the Columbia River Basin. 4. A hydrological model quantifying the dynamics of rearing habitat opportunities for juvenile salmon at estuary reach and habitat scales. 5. Improved life-cycle models to account for the estuarine life histories of juvenile salmon and estimating the potential effectiveness of estuary restoration actions on the recovery and viability of selected salmon stocks. These results will directly address information needs to support estuary actions specified in the Federal Columbia River Power System (FCRPS) Biological Opinion for the Columbia River. The tidal-fluvial estuary study is part of an ongoing estuary research program initiated in 2002. The current study expands upon earlier research conducted in the lower 100 km of the estuary from 2002 to 2008. Although all objectives will be addressed by 2018 to correspond with a review of progress implementing the FCRPS Biological Opinion, some sampling activities may extend beyond this date to allow brood-year reconstruction of estuary contributions to adult returns in selected streams (Objective 3). PIT detection data (residence time, travel time) in estuary wetland channels from juvenile salmon tagged by this project and other projects. Addresses Legal Mandate Raw/field data, Monitoring or sensor data, Time series (of types 1-3) Loaded by batch 4266, 01-30-2013 18:25 Subject to Public Access to Research Results (PARR): Yes Database: Genetic stock distribution. Genetic stock group ID for juvenile Chinook Salmon collected from 3 habitats each from 6 tidal-fluvial estuary reaches Journal Publication: Genetic Identification of Chinook Salmon in the Columbia River Estuary: Stock-specific Distributions of Juveniles in Shallow Tidal Freshwater Habitats. David J. Teel, Daniel L. Bottom, Susan A. Hinton, David R. Kuligowski, George T. McCabe, Regan McNatt, G. Curtis Roegner, Lia A. Stamatiou & Charles A. Simenstad (2014) Genetic Identification of Chinook Salmon in the Columbia River Estuary: Stock-Specific Distributions of Juveniles in Shallow Tidal Freshwater Habitats, North American Journal of Fisheries Management, 34:3, 621-641, DOI: 10.1080/02755947.2014.901258 Journal Publication: Residency and movement of juvenile Chinook salmon at multiple scales in a tidal marsh of the Columbia River Estuary. Regan A McNatt, Susan, A Hinton, Daniel L. Bottom Theme Chinook salmon Theme Columbia River Theme habitat Theme juvenile salmonid Theme life history Spatial Point Adams Field Station Instrument Balance Instrument Depth-Temperature Sensor Instrument Instrument Not Applicable - Instrument Not Applicable Instrument Length Board Platform Animal and Plant Collection Device Northwest Fisheries Science Center Seattle WA USA Data Set Access Database Table (digital) Balance, Depth-Temperature Sensor, Instrument Not Applicable - Instrument Not Applicable, Length Board Sea Floor based Platform, Water based Platforms - Watercraft - Manned Watercraft - Boat Animal and Plant Collection Device 36834 PIT Tag Downloaded Data Published / External Planned Downloaded data for PIT tagged fish detected in estuary wetland channels from juvenile salmon. Data Table Yes PARR Downloaded data for PIT tagged fish detected in estuary wetland channels from juvenile salmon. 1 id NUMBER 22 No No Active An automatically generated record identification number. NUMBER 2 site VARCHAR2 255 No No Active The name of the site where data were collected. VARCHAR2 3 tag id VARCHAR2 255 No No Active The hexadecimal identification number of the passive integrated transponder tag. VARCHAR2 4 channel NUMBER 22 No No Active The number of the communication channel that received the signal from the passive integrated transponder tag. NUMBER 5 time stamp DATE 22 No No Active The date and time that the signal was received. DATE 36835 PIT Tag Details Published / External Planned Tag details for PIT tagged fish detected in estuary wetland channels from juvenile salmon. Data Table Yes PARR Tag details for PIT tagged fish detected in estuary wetland channels from juvenile salmon. 1 tag id VARCHAR2 255 Yes No Active The hexadecimal identification number of the passive integrated transponder tag. VARCHAR2 2 tag file id VARCHAR2 255 No No Active The name of the tagging file that was upload to the regional database, PTAGIS. VARCHAR2 3 tag date DATE 22 No No Active The Date when fish were tagged. DATE 4 tag site VARCHAR2 255 No No Active The location where fish were tagged. VARCHAR2 5 release date DATE 22 No No Active The Date when fish were released. DATE 6 release site VARCHAR2 255 No No Active The location where fish were released. VARCHAR2 7 migration year NUMBER 22 No No Active The year in which fish were expected to migrate to the ocean. NUMBER 8 organization VARCHAR2 255 No No Active The abbreviation for the agency or organization performing the tagging. VARCHAR2 9 coordinator id VARCHAR2 255 No No Active The identification code for the person in charge of the tagging project. VARCHAR2 10 huc code NUMBER 22 No No Active The hydrologic unti code. NUMBER 11 river km NUMBER 22 No No Active The river kilometer where the fish were released. NUMBER 12 sequence number NUMBER 22 No No Active An automatically generated number to indicate in what order fish were tagged. NUMBER 13 species NUMBER 22 No No Active The species code of fish tagged. NUMBER 14 run NUMBER 22 No No Active The run code of fish tagged. NUMBER 15 rear type VARCHAR2 255 No No Active The rear type code of fish tagged. VARCHAR2 16 length NUMBER 22 No No Active The fork lenth (mm) of fish tagged. NUMBER 17 weight NUMBER 22 No No Active The weight (g) of fish tagged. NUMBER 18 flags VARCHAR2 255 No No Active This field indicates if a particular fish had a certain attribute predefined by PTAGIS. VARCHAR2 19 session message VARCHAR2 255 No No Active This field describes the tagging study. VARCHAR2 20 tagger VARCHAR2 255 No No Active The last name and first initial of person tagging the fish. VARCHAR2 21 capture method VARCHAR2 255 No No Active The method of capturing the fish. VARCHAR2 22 tag temp NUMBER 22 No No Active The water temperature at the time of tagging (C). NUMBER 23 tag comments VARCHAR2 255 No No Active A field where additional comments can be added. VARCHAR2 Data Steward 2025 Person Roegner, George Curtis curtis.roegner@noaa.gov 520 Heceta Place Hammond OR 97121 Distributor 2015-10-01 Organization Northwest Fisheries Science Center NWFSC nmfs.nwfsc.metadata@noaa.gov https://ror.org/05r7z1k40 2725 Montlake Boulevard East Seattle WA 98112 USA 206-860-3200 https://www.nwfsc.noaa.gov NWFSC Home Online Resource Metadata Contact 2025 Person Grote, Jeffrey jeffrey.grote@noaa.gov 520 Heceta Place Hammond OR 97121 Originator 2015-10-01 Person McNatt, Regan A Regan.McNatt@noaa.gov 503-861-1818 x25 Point of Contact 2025 Person Roegner, George Curtis curtis.roegner@noaa.gov 520 Heceta Place Hammond OR 97121 -123.9474 -123.9474 46.1995 46.1995 Point Adams Field Station Range 2010-03-31 2018-09-30 Unclassified Majority of these data are already available via the regional database, PTAGIS.org N/A https://www.webapps.nwfsc.noaa.gov/apex/parr/pit_tag_details/data/page/ 2015-10-01 Organization Northwest Fisheries Science Center https://ror.org/05r7z1k40 PIT Tag Details (RESTful) Tag details for PIT tagged fish detected in estuary wetland channels from juvenile salmon. https://www.webapps.nwfsc.noaa.gov/apex/parr/pit_tag_downloaded_data/data/page/ 2015-10-01 Organization Northwest Fisheries Science Center https://ror.org/05r7z1k40 PIT Tag Downloaded Data (RESTful) Downloaded data for PIT tagged fish detected in estuary wetland channels from juvenile salmon. https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/tables/table/pit_tag_details 2015-10-01 Organization Northwest Fisheries Science Center https://ror.org/05r7z1k40 PIT Tag Details Tag details for PIT tagged fish detected in estuary wetland channels from juvenile salmon. https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/tables/table/pit_tag_downloaded_data 2015-10-01 Organization Northwest Fisheries Science Center https://ror.org/05r7z1k40 PIT Tag Downloaded Data Downloaded data for PIT tagged fish detected in estuary wetland channels from juvenile salmon. https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/datasets/dataset/7955 In-stream PIT detection, estuary wetlands Online Resource Web site NWFSC Dataset Information page. PIT detection data (residence time, travel time) in estuary wetland channels from juvenile salmon tagged by this project and other projects. Access Database High Access database has some quality control measures. Data uploaded to PTAGIS undergo quality control measures maintained by the database manager. These data were collected and processed in accordance with established protocols and best practices under the direction of the project’s Principal Investigator. Contact the dataset Data Manager for full QA/QC methodology. No 5 Yes No No 0 days No Delay Other 60 Ptagis.org has protection and back up measures in place. Some field collected data are manually entered to software at time of observation. Other data are imported into Access and then uploaded to regional database called PTAGIS. 36835 Entity 36834 Entity gov.noaa.nmfs.inport:17979 Jeffrey Cowen 2013-01-30T18:25:48 SysAdmin InPortAdmin 2026-03-04T19:17:17 2019-06-04 Northwest Fisheries Science Center NWFSC 2725 Montlake Boulevard East Seattle WA 98112 USA 206-860-3200 https://www.nwfsc.noaa.gov 1001 Public No No 2019-06-04 1 Year 2020-06-04