18597 Killer Whale Genetic Data (Genetic marker development and applications for southern resident killer whales) Data Set Published / External 17775 CB (Conservation Biology) Division Project In Work 2005-01-01 2018-02-05 The southern residents face several well-documented external threats. However, the population might also be subject to internal factors that limit population growth, including a reduction in fitness due to inbreeding. Understanding how inbreeding affects individual fitness and thus the health status of the population is critical for evaluating the relative influence of other factors on southern resident recovery. Assessing the risk of inbreeding depression – specifically called for in the NMFS recovery plan – is important for conducting accurate Population Viability Analyses and correctly understanding the urgency of recovery efforts. Here, we propose using genomic methods to evaluate inbreeding and inbreeding depression in the southern resident population and a comparable but healthier Alaskan resident population. Measures of inbreeding will serve as an important health marker, supporting the integration of individual metrics aimed at understanding population performance. Measures of inbreeding can be obtained directly by estimating variation at millions of DNA markers in an individual’s genome. Complete genomic sequences for 100 southern and 50 Alaska residents will be collected in collaboration with the genomics company BGI. Inbreeding values for each individual will be obtained using genome wide measures of homozygosity and relatedness. We will then combine measured of inbreeding with data on individual fitness, to evaluate whether inbreeding leads to inbreeding depression. Generalized additive models will be used to determine whether survivorship, fecundity and size-at-age is influenced by different levels of inbreeding. Using this data, we will measure the degree of current and predicted future of inbreeding in the southern residents and compare this risk with the Alaska residents that have experienced consistent population growth. We will then evaluate whether inbreeding depression explains individual variance in fitness, and estimate its influence on the status of southern residents, using Population Viability Analyses. Microsatellite, SNP, and mtDNA sequence data from southern resident killer whales. Addresses Legal Mandate Raw/field data, Laboratory data Loaded by batch 4488, 02-28-2013 15:16 Subject to Public Access to Research Results (PARR): Yes Database: Inbreeding and heterozygosity data are provided the southern resident killer whale health database. Peer Reviewed Publication: Publication submitted March 2017. Additional publication expected in 2018. Theme Puget Sound Theme genetics Theme killer whale Spatial NWFSC Montlake Instrument DNA Sequencer Northwest Fisheries Science Center Seattle WA USA Data Set Spreadsheet Table (digital) DNA Sequencer Platform Not Applicable Not Applicable 51478 Combined Snp And Usat Genotypes Feb 10 2017 Published / External Planned Table of multi-locus microsatellite and single nucleotide polymorphism (SNP) genotypes collected from southern resident killer whales. Spreadsheet Yes PARR Table of multi-locus microsatellite and single nucleotide polymorphism (SNP) genotypes collected from southern resident killer whales. 1 id text No No Active individual identifier. Name of the sample being genotyped. text 2 Oor_100079_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 3 Oor_100079_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 4 Oor_100362_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 5 Oor_100362_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 6 Oor_100846_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 7 Oor_100846_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 8 Oor_101161_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 9 Oor_101161_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 10 Oor_101241_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 11 Oor_101241_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 12 Oor_101641_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 13 Oor_101641_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 14 Oor_101907_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 15 Oor_101907_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 16 Oor_102202_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 17 Oor_102202_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 18 Oor_102845_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 19 Oor_102845_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 20 Oor_102860_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 21 Oor_102860_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 22 Oor_103349_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 23 Oor_103349_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 24 Oor_103887_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 25 Oor_103887_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 26 Oor_104044_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 27 Oor_104044_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 28 Oor_104340_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 29 Oor_104340_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 30 Oor_104435_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 31 Oor_104435_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 32 Oor_104683_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 33 Oor_104683_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 34 Oor_105103_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 35 Oor_105103_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 36 Oor_105415_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 37 Oor_105415_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 38 Oor_105982_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 39 Oor_105982_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 40 Oor_106047_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 41 Oor_106047_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 42 Oor_106351_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 43 Oor_106351_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 44 Oor_107128_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 45 Oor_107128_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 46 Oor_10805_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 47 Oor_10805_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 48 Oor_112291_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 49 Oor_112291_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 50 Oor_11720_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 51 Oor_11720_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 52 Oor_118653_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 53 Oor_118653_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 54 Oor_118863_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 55 Oor_118863_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 56 Oor_120591_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 57 Oor_120591_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 58 Oor_120695_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 59 Oor_120695_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 60 Oor_122338_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 61 Oor_122338_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 62 Oor_12912_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 63 Oor_12912_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 64 Oor_17294_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 65 Oor_17294_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 66 Oor_18685_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 67 Oor_18685_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 68 Oor_21511_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 69 Oor_21511_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 70 Oor_30411_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 71 Oor_30411_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 72 Oor_34367_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 73 Oor_34367_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 74 Oor_61181_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 75 Oor_61181_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 76 Oor_64449_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 77 Oor_64449_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 78 Oor_70745_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 79 Oor_70745_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 80 Oor_75702_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 81 Oor_75702_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 82 Oor_80465_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 83 Oor_80465_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 84 Oor_84520_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 85 Oor_84520_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 86 Oor_8689_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 87 Oor_8689_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 88 Oor_87542_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 89 Oor_87542_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 90 Oor_87788_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 91 Oor_87788_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 92 Oor_87797_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 93 Oor_87797_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 94 Oor_93425_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 95 Oor_93425_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 96 Oor_940_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 97 Oor_940_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 98 Oor_94302_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 99 Oor_94302_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 100 Oor_94764_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 101 Oor_94764_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 102 Oor_94779_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 103 Oor_94779_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 104 Oor_95192_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 105 Oor_95192_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 106 Oor_9585_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 107 Oor_9585_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 108 Oor_96837_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 109 Oor_96837_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 110 Oor_96900_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 111 Oor_96900_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 112 Oor_97588_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 113 Oor_97588_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 114 Oor_97719_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 115 Oor_97719_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 116 Oor_98002_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 117 Oor_98002_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 118 Oor_98234_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 119 Oor_98234_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 120 Oor_99690_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 121 Oor_99690_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 122 Oor_ACTC_676_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 123 Oor_ACTC_676_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 124 Oor_AHCY_698_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 125 Oor_AHCY_698_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 126 Oor_DRD2_187_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 127 Oor_DRD2_187_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 128 Oor_FES_818_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 129 Oor_FES_818_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 130 Oor_Fibrinogen_187_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 131 Oor_Fibrinogen_187_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 132 Oor_LF_790_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 133 Oor_LF_790_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 134 Oor_NPPA_323_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 135 Oor_NPPA_323_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 136 Oor_WT1_540_1_1 number No No Active First allele at a diploid SNP genotype. Allele 1 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 137 Oor_WT1_540_1_2 number No No Active Second allele at a diploid SNP genotype. Allele 2 at a SNP locus. number 1=A, 2=C, 3=G, 4=T, 0=missing 138 Eva37a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 139 Eva37b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 140 Gt39a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 141 Gt39b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 142 Ttr04a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 143 Ttr04b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 144 Ttr11a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 145 Ttr11b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 146 Ttr48a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 147 Ttr48b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 148 Kw4a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 149 Kw4b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 150 Eva1a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 151 Eva1b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 152 Eva5a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 153 Eva5b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 154 Fcb5a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 155 Fcb5b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 156 Fcb11a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 157 Fcb11b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 158 Fcb12a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 159 Fcb12b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 160 Fcb17a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 161 Fcb17b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 162 Kwm2aa number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 163 Kwm2ab number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 164 Kwm12aa number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 165 Kwm12bb number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 166 Gt48a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 167 Gt48b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 168 Gt142a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 169 Gt142b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 170 Mk5a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 171 Mk5b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 172 Mk9a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 173 Mk9b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 174 Dde65a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 175 Dde65b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 176 Dde66a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 177 Dde66b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 178 Dde70a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 179 Dde70b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 180 Kw199a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 181 Kw199b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 182 Kw207a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 183 Kw207b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 184 Ba415a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 185 Ba415b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 186 Ba464a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 187 Ba464b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs 188 Ttr34a number No No Active First allele at a diploid microsatellite genotype. Allele 1 at a microsatellite locus. number fragment size in base pairs 189 Ttr34b number No No Active Second allele at a diploid microsatellite genotype. Allele 2 at a microsatellite locus. number fragment size in base pairs Data Steward 2015-10-01 Person Ford, Mike J Mike.Ford@noaa.gov 2725 Montlake Boulevard East Seattle WA 98112 206-860-5612 Distributor 2015-10-01 Organization Northwest Fisheries Science Center NWFSC nmfs.nwfsc.metadata@noaa.gov https://ror.org/05r7z1k40 2725 Montlake Boulevard East Seattle WA 98112 USA 206-860-3200 https://www.nwfsc.noaa.gov NWFSC Home Online Resource Metadata Contact 2025 Person Ford, Mike J Mike.Ford@noaa.gov 2725 Montlake Boulevard East Seattle WA 98112 206-860-5612 Originator 2015-10-01 Person Park, Linda Linda.Park@noaa.gov 2725 Montlake Boulevard East Seattle WA 98112 206-860-3241 Point of Contact 2015-10-01 Person Ford, Mike J Mike.Ford@noaa.gov 2725 Montlake Boulevard East Seattle WA 98112 206-860-5612 -122.3062 -122.3062 47.6449 47.6449 NWFSC Montlake: NWFSC Montlake lab Continuing 2011-01-01 Unclassified At this time, contact the Data Manager for information on obtaining access to this data set. In the near future, the NWFSC will strive to provide all non-sensitive data resources as a web service in order to meet the NOAA Data Access Policy Directive (https://nosc.noaa.gov/EDMC/PD.DA.php). NA https://www.webapps.nwfsc.noaa.gov/apex/parr/combined_snp_and_usat_genotypes_feb_10_2017/data/page/ 2015-10-01 Organization Northwest Fisheries Science Center https://ror.org/05r7z1k40 Combined Snp And Usat Genotypes Feb 10 2017 (RESTf Table of multi-locus microsatellite and single nucleotide polymorphism (SNP) genotypes collected from southern resident killer whales. https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/tables/table/combined_snp_and_usat_genotypes_feb_10_2017 2015-10-01 Organization Northwest Fisheries Science Center https://ror.org/05r7z1k40 Combined Snp And Usat Genotypes Feb 10 2017 Table of multi-locus microsatellite and single nucleotide polymorphism (SNP) genotypes collected from southern resident killer whales. https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/datasets/dataset/3030 Killer Whale Genetic Data Online Resource Web site NWFSC Dataset Information page. Microsatellite, SNP, and mtDNA sequence data from southern resident killer whales Spreadsheet High These data were collected and processed in accordance with established protocols and best practices under the direction of the project’s Principal Investigator. Contact the dataset Data Manager in section 3 for full QA/QC methodology. No 0 No No No 0 days No Delay NCEI-MD 365 The Northwest Fisheries Science Center facilitates backup and recovery of all data and IT components which are managed by IT Operations through the capture of static (point-in-time) backup data to physical media. Once data is captured to physical media (every 1-3 days), a duplicate is made and routinely (weekly) transported to an offsite archive facility where it is maintained throughout the data's applicable life-cycle. DNA genotyping: These data were collected and processed in accordance with established protocols and best practices under the direction of the project’s Principal Investigator. Contact the dataset Data Manager for full QA/QC methodology. 51478 Entity gov.noaa.nmfs.inport:18597 SysAdmin InPortAdmin 2013-02-28T15:16:00 SysAdmin InPortAdmin 2026-03-04T19:17:17 2019-06-04 Northwest Fisheries Science Center NWFSC 2725 Montlake Boulevard East Seattle WA 98112 USA 206-860-3200 https://www.nwfsc.noaa.gov 1001 Public No No 2019-06-04 1 Year 2020-06-04