CBOS damage assessment on Pacific herring - Toxicity of petroleum hydrocarbons (PAHs) to fish early life stages
Northwest Fisheries Science Center
Data Set
(DS)
| ID: 20575
| Published / External
Created: 2013-09-05
|
Last Modified: 2022-08-09
Project (PRJ) | ID: 20543
ID: 20575
Data Set (DS)
* Discovery• First Pass
» Metadata Rubric
Item Identification
* » Title | CBOS damage assessment on Pacific herring - Toxicity of petroleum hydrocarbons (PAHs) to fish early life stages |
---|---|
Short Name | CBOS damage assessment on Pacific herring (Toxicity of petroleum hydrocarbons (PAHs) to fish early life stages) |
* Status | In Work |
Creation Date | 2008-12-01 |
Revision Date | |
• Publication Date | |
* » Abstract |
The Ecotox Program is at the forefront, nationally and internationally, of targeted research to characterize the impacts of petroleum hydrocarbons on NOAA trust resources, particularly fish early life stages. This work is extending lessons learned from the Exxon Valdez oil spill in Alaska, through the Cosco Busan spill in San Francisco Bay, to an array of current and intensive activities associated with the Deepwater Horizon natural resource damage assessment in the Gulf of Mexico. This research has been particularly influential in recent years (PNAS papers in 2011 and 2012), with major Deepwater papers forthcoming in 2012 and 2013. Funding has come from NOS/ORR, the Oiled Wildlife Care Network, the Prince William Sound Regional Citizen's Advisory Council, the San Francisco Estuary Institute, and other sources. Ecotox is currently developing new tools to assess PAH exposure and toxicity in fish and other animals, with national applicability - e.g., in advance of anticipated oil drilling in the Arctic, beginning in the summer of 2012. 3 year study of effects of the Cosco Busan oil spill. Morphology, heart rate, hatching rate data of Pacific herring planted at oil and reference sites and correlating herring spawns at these sites. This work supports NOAA’s Damage Assessment, Remediation, and Restoration Program (DARRP). |
* Purpose |
Addresses Legal Mandate Laboratory data |
Notes |
Loaded by FGDC Metadata Uploader, batch 4701, 09-05-2013 18:07 |
Other Citation Details | |
• Supplemental Information |
Subject to Public Access to Research Results (PARR): No: Data Not Yet Collected Peer Reviewed Publication: Incardona, J.P., Vines, C.A., and Scholz, N.L. (2012) Unexpectedly high rates of early life stage mortality among herring spawned in the 2007 Cosco Busan oil spill impact zone in San Francisco Bay. Proceedings of the National Academy of Sciences, 109(2):E51-58.. Peer Reviewed Publication: Incardona, J.P., Vines, C.A., Linbo, T.L., Myers, M.S., Labenia, J.S., French, B.L., Olson, O.P., Sol, S.Y., Willis, M.L., Jarvis, M., Newman, J., Meeks, D. Menard, K., Sloan, C.A., Baldwin, D.H., Ylitalo, G.M., Collier, T.K., Cherr, G.N. and Scholz, N.L. (2012) Potent photoxicity of marine bunker oil to translucent herring embryos after prolonged weathering. Public Library of Science ONE, 7(2): e30116. doi:10.1371/journal.pone.0030116.. Peer Reviewed Publication: Incardona, J.P., Carls, M.G., Day, H.L., Sloan, C.A., Bolton, J.L., Collier, T.K., and Scholz N.L. (2009). Cardiac arrhythmia is the primary response of embryonic Pacific herring (Clupea pallasi) exposed to crude oil during weathering. Environmental Science and Technology, 43:201-207.. Peer Reviewed Publication: Hicken, C.L., Linbo, T.L., Baldwin, D.W., Willis, M.L., Myers, M.S., Holland, L., Larsen, M., Stekoll, M.S., Rice, S.D., Collier, T.K., Scholz, N.L., and Incardona, J.P. (2011). Sublethal exposure to crude oil during embryonic development alters cardiac morphology and reduces aerobic capacity in adult fish. Proceedings of the National Academy of Sciences, 108:7086-7090.. Peer Reviewed Publication: Incardona, J.P., Linbo, T.L., and Scholz, N.L. (2011). Cardiac toxicity of 5-ring polycyclic aromatic hydrocarbons is differentially dependent on the aryl hydrocarbon receptor 2 isoform during zebrafish development. Toxicology and Applied Pharmacology, 257:242-249.. Peer Reviewed Publication: Incardona, J.P., Carls, M.G., Teraoka, H., Sloan, C.A., Collier, T.K., and Scholz, N.L. (2005). Aryl hydrocarbon receptor-independent toxicity of weathered crude oil during fish development. Environmental Health Perspectives, 113:1755-1762.. Peer Reviewed Publication: Carls, M.G., Holland, L., Larsen, M., Collier, T.K., Scholz, N.L., and Incardona, J.P. (2008). Fish embryos are damaged by dissolved PAHs, not oil particles. Aquatic Toxicology, 88:121-127.. Peer Reviewed Publication: Hatlen, K., Sloan, C.A., Burrows, D.G., Collier, T.K., Scholz, N.L., and Incardona, J.P. (2010). Natural sunlight and residual fuel oils are a lethal combination for fish embryos. Aquatic Toxicology, 99:56-64.. Peer Reviewed Publication: Incardona, J.P., Collier, T.K., and Scholz, N.L. (2011). Oil spills and fish health: exposing the heart of the matter. Journal of Exposure Science and Environmental Epidemiology, 21:3-4.. Peer Reviewed Publication: Incardona, J.P., Collier, T.K., and Scholz, N.L. (2004). Defects in cardiac function precede morphological abnormalities in fish embryos exposed to polycyclic aromatic hydrocarbons. Toxicology and Applied Pharmacology, 196:191-205.. Peer Reviewed Publication: Incardona, J.P., Day, H.L., Collier, T.K., and Scholz, N.L. (2006). Developmental toxicity of 4-ring polycyclic aromatic hydrocarbons in zebrafish is differentially dependent on AH receptor isoforms and hepatic cytochrome P4501A metabolism. Toxicology and Applied Pharmacology, 217:308-321.. |
DOI (Digital Object Identifier) | |
DOI Registration Authority | |
DOI Issue Date |
Keywords
Theme Keywords
Thesaurus | Keyword |
---|---|
PARR Exclusion | Obsolete |
None | early development of fish |
None | marine fishes |
None | oil spill-related contaminants |
Temporal Keywords
Thesaurus | Keyword |
---|---|
* Spatial Keywords
Thesaurus | Keyword |
---|---|
None | Gulf of Mexico |
None | NWFSC Montlake, Seattle, WA |
None | San Francisco Bay, Sausalito, CA |
Stratum Keywords
Thesaurus | Keyword |
---|---|
Instrument Keywords
Thesaurus | Keyword |
---|---|
None | 92372 |
Platform Keywords
Thesaurus | Keyword |
---|---|
Physical Location
• » Organization | Northwest Fisheries Science Center |
---|---|
• » City | Seattle |
• » State/Province | WA |
• Country | USA |
• » Location Description |
Data Set Information
* Data Set Scope Code | Data Set |
---|---|
• Data Set Type | Spreadsheet |
• Maintenance Frequency | |
Maintenance Note | |
» Data Presentation Form | Table (digital) |
• Entity Attribute Overview | |
Entity Attribute Detail Citation | |
Entity Attribute Detail URL | |
Distribution Liability | |
Data Set Credit |
Support Roles
* » Support Role | Data Steward |
---|---|
* » Date Effective From | 2015-01-01 |
Date Effective To | |
Person | Incardona, John |
Address |
2725 Montlake Boulevard East Seattle, WA 98112 |
Email Address | John.Incardona@noaa.gov |
Phone | 206-860-3347 |
Fax | |
Mobile | |
URL | |
Business Hours | |
Contact Instructions |
* » Support Role | Distributor |
---|---|
* » Date Effective From | 2015-01-01 |
Date Effective To | |
Organization | Northwest Fisheries Science Center (NWFSC) |
Address |
2725 Montlake Boulevard East Seattle, WA 98112 USA |
Email Address | nmfs.nwfsc.metadata@noaa.gov |
Phone | 206-860-3200 |
Fax | |
Mobile | |
URL | http://www.nwfsc.noaa.gov |
Business Hours | |
Contact Instructions |
* » Support Role | Metadata Contact |
---|---|
* » Date Effective From | 2015-01-01 |
Date Effective To | |
Organization | Northwest Fisheries Science Center (NWFSC) |
Address |
2725 Montlake Boulevard East Seattle, WA 98112 USA |
Email Address | nmfs.nwfsc.metadata@noaa.gov |
Phone | 206-860-3200 |
Fax | |
Mobile | |
URL | http://www.nwfsc.noaa.gov |
Business Hours | |
Contact Instructions |
* » Support Role | Originator |
---|---|
* » Date Effective From | 2015-01-01 |
Date Effective To | |
Person | Incardona, John |
Address |
2725 Montlake Boulevard East Seattle, WA 98112 |
Email Address | John.Incardona@noaa.gov |
Phone | 206-860-3347 |
Fax | |
Mobile | |
URL | |
Business Hours | |
Contact Instructions |
* » Support Role | Point of Contact |
---|---|
* » Date Effective From | 2015-01-01 |
Date Effective To | |
Person | Incardona, John |
Address |
2725 Montlake Boulevard East Seattle, WA 98112 |
Email Address | John.Incardona@noaa.gov |
Phone | 206-860-3347 |
Fax | |
Mobile | |
URL | |
Business Hours | |
Contact Instructions |
* » Support Role | |
---|---|
* » Date Effective From | |
Date Effective To | |
* » Contact | |
* Contact Instructions |
* » Support Role | |
---|---|
* » Date Effective From | |
Date Effective To | |
* » Contact | |
* Contact Instructions |
* » Support Role | |
---|---|
* » Date Effective From | |
Date Effective To | |
* » Contact | |
* Contact Instructions |
Extents
Currentness Reference |
---|
Extent Group 1
Extent Description |
---|
Extent Group 1 / Geographic Area 1
* » W° Bound | -122.3062 |
---|---|
* » E° Bound | -122.3062 |
* » N° Bound | 47.6449 |
* » S° Bound | 47.6449 |
* » Description |
NWFSC Montlake, Seattle, WA |
Extent Group 1 / Vertical Extent
EPSG Code | |
---|---|
Vertical Minimum | |
Vertical Maximum |
Extent Group 1 / Time Frame 1
* » Time Frame Type | Range |
---|---|
* » Start | 2008-01-01 |
End | 2016-01-01 |
Alternate Start As Of Info | |
Alternate End As Of Info | |
Description |
Extent Group 2
Extent Description |
---|
Extent Group 2 / Geographic Area 1
* » W° Bound | -122.4805 |
---|---|
* » E° Bound | -122.4805 |
* » N° Bound | 37.8551 |
* » S° Bound | 37.8551 |
* » Description |
San Francisco Bay, Sausalito, CA |
Extent Group 2 / Vertical Extent
EPSG Code | |
---|---|
Vertical Minimum | |
Vertical Maximum |
Extent Group 2 / Time Frame 1
* » Time Frame Type | Range |
---|---|
* » Start | 2008-01-01 |
End | 2010-01-01 |
Alternate Start As Of Info | |
Alternate End As Of Info | |
Description |
Extent Group 3
Extent Description |
---|
Extent Group 3 / Geographic Area 1
* » W° Bound | -91.8565 |
---|---|
* » E° Bound | -84.21 |
* » N° Bound | 28.7566 |
* » S° Bound | 23.9546 |
* » Description |
Gulf of Mexico |
Extent Group 3 / Vertical Extent
EPSG Code | |
---|---|
Vertical Minimum | |
Vertical Maximum |
Extent Group 3 / Time Frame 1
* » Time Frame Type | Range |
---|---|
* » Start | 2010-01-01 |
End | 2016-01-01 |
Alternate Start As Of Info | |
Alternate End As Of Info | |
Description |
Spatial Information
Spatial Resolution
Angular Distance | |
---|---|
Angular Distance Units | |
Horizontal Distance | |
Horizontal Distance Units | |
Vertical Distance | |
Vertical Distance Units | |
Equivalent Scale Denominator | |
Level of Detail Description |
|
Spatial Representation
Grid Representation Used? | |
---|---|
Vector Representation Used? | |
Text / Table Representation Used? | |
TIN Representation Used? | |
Stereo Model Representation Used? | |
Video Representation Used? |
Grid Representation
Dimension Count | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cell Geometry | |||||||||||||
Transformation Parameter Available? | |||||||||||||
Axis Dimension |
|||||||||||||
|
|||||||||||||
Axis Dimension |
|||||||||||||
|
Vector Representation
Topology Level | |
---|---|
Complex Object Present? | |
Complex Object Count | |
Composite Object Present? | |
Composite Object Count | |
Curve Object Present? | |
Curve Object Count | |
Point Object Present? | |
Point Object Count | |
Solid Object Present? | |
Solid Object Count | |
Surface Object Present? | |
Surface Object Count |
Reference Systems
Reference System
EPSG Code | |||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Horizontal Resolution |
|||||||||||||||||||||||||||||
|
|||||||||||||||||||||||||||||
Vertical Resolution |
|||||||||||||||||||||||||||||
|
Access Information
Data License | |
---|---|
Data License URL | |
Data License Statement | |
* » Security Class | Unclassified |
* Security Classification System | |
Security Handling Description | |
• Data Access Policy | |
» Data Access Procedure |
Download from National Ocean Service Office of Response and Restoration |
• » Data Access Constraints |
NA |
• Data Use Constraints | |
Metadata Access Constraints | |
Metadata Use Constraints |
Distribution Information
Start Date | |
---|---|
End Date | |
» Download URL | |
Distributor | |
File Name | |
Description | |
File Date/Time | |
File Type | |
FGDC Content Type | |
File Size | |
Application Version | |
Compression | |
Review Status |
Start Date | |
---|---|
End Date | |
» Download URL | |
Distributor | |
File Name | |
Description | |
File Date/Time | |
File Type | |
FGDC Content Type | |
File Size | |
Application Version | |
Compression | |
Review Status |
Start Date | |
---|---|
End Date | |
» Download URL | |
Distributor | |
File Name | |
Description | |
File Date/Time | |
File Type | |
FGDC Content Type | |
File Size | |
Application Version | |
Compression | |
Review Status |
Archive Information
Location | |
---|---|
File Identifier | |
File Name | |
URL | |
Description | |
DOI | |
Archive Date | |
Archive Update Frequency |
Location | |
---|---|
File Identifier | |
File Name | |
URL | |
Description | |
DOI | |
Archive Date | |
Archive Update Frequency |
Location | |
---|---|
File Identifier | |
File Name | |
URL | |
Description | |
DOI | |
Archive Date | |
Archive Update Frequency |
URLs
URL | https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/datasets/dataset/12764 |
---|---|
Name | CBOS damage assessment on Pacific herring |
URL Type | Online Resource |
File Resource Format | Web site |
Description |
NWFSC Dataset Information page. 3 year study of effects of the Cosco Busan oil spill. Morphology, heart rate, hatching rate data of Pacific herring planted at oil and reference sites and correlating herring spawns at these sites. This work supports NOAA’s Damage Assessment, Remediation, and Restoration Program (DARRP). |
URL | |
---|---|
Name | |
URL Type | |
File Resource Format | |
Description |
URL | |
---|---|
Name | |
URL Type | |
File Resource Format | |
Description |
URL | |
---|---|
Name | |
URL Type | |
File Resource Format | |
Description |
Activity Log
Activity Time | |
---|---|
Activity Type | |
Responsible Party | |
Description |
Activity Time | |
---|---|
Activity Type | |
Responsible Party | |
Description |
Activity Time | |
---|---|
Activity Type | |
Responsible Party | |
Description |
Issues
Issue Date | |
---|---|
Author | |
Issue |
Issue Date | |
---|---|
Author | |
Issue |
Issue Date | |
---|---|
Author | |
Issue |
Technical Environment
Description |
Other - Hard drives |
---|
Data Quality
Representativeness | |
---|---|
Accuracy |
Medium |
Analytical Accuracy | |
Horizontal Positional Accuracy | |
Vertical Positional Accuracy | |
Quantitation Limits | |
Bias | |
Comparability | |
Completeness Measure | |
Precision | |
Analytical Precision | |
Field Precision | |
Sensitivity | |
Detection Limit | |
Completeness Report | |
Conceptual Consistency | |
» Quality Control Procedures Employed |
According to standard operating procedures available at (http://darrp.noaa.gov/southwest/cosco/index.html). |
Data Management
» Have Resources for Management of these Data Been Identified? | Yes |
---|---|
» Approximate Percentage of Budget for these Data Devoted to Data Management | 10 |
» Do these Data Comply with the Data Access Directive? | Yes |
» Is Access to the Data Limited Based on an Approved Waiver? | Yes |
» If Distributor (Data Hosting Service) is Needed, Please Indicate | Yes |
» Approximate Delay Between Data Collection and Dissemination | 0 days |
» If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed |
No Delay |
» Actual or Planned Long-Term Data Archive Location | NCEI-MD |
» Approximate Delay Between Data Collection and Archiving | Unknown |
» How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive? |
The Northwest Fisheries Science Center facilitates backup and recovery of all data and IT components which are managed by IT Operations through the capture of static (point-in-time) backup data to physical media. Once data is captured to physical media (every 1-3 days), a duplicate is made and routinely (weekly) transported to an offsite archive facility where it is maintained throughout the data's applicable life-cycle. |
Lineage
» Lineage Statement |
ImageJ (from NIH) was used to process images. |
---|
Sources
Citation Title | |
---|---|
Contact Role Type | |
Contact Type | |
Contact Name | |
Publish Date | |
Extent Type | |
Extent Start Date/Time | |
Extent End Date/Time | |
Citation URL | |
Citation URL Name | |
Citation URL Description | |
Scale Denominator |
Citation Title | |
---|---|
Contact Role Type | |
Contact Type | |
Contact Name | |
Publish Date | |
Extent Type | |
Extent Start Date/Time | |
Extent End Date/Time | |
Citation URL | |
Citation URL Name | |
Citation URL Description | |
Scale Denominator |
Citation Title | |
---|---|
Contact Role Type | |
Contact Type | |
Contact Name | |
Publish Date | |
Extent Type | |
Extent Start Date/Time | |
Extent End Date/Time | |
Citation URL | |
Citation URL Name | |
Citation URL Description | |
Scale Denominator |
Process Steps
Process Step Number | |
---|---|
» Description | |
Process Date/Time | |
Process Contact | |
Phone (Voice) | |
Email Address | |
Source |
Process Step Number | |
---|---|
» Description | |
Process Date/Time | |
Process Contact | |
Phone (Voice) | |
Email Address | |
Source |
Process Step Number | |
---|---|
» Description | |
Process Date/Time | |
Process Contact | |
Phone (Voice) | |
Email Address | |
Source |
Acquisition Information
Instruments
Instrument Unavailable Reason |
---|
Identifier | |
---|---|
Docucomp UUID | |
Instrument / Gear | |
Instrument Type | |
Description |
Identifier | |
---|---|
Docucomp UUID | |
Instrument / Gear | |
Instrument Type | |
Description |
Identifier | |
---|---|
Docucomp UUID | |
Instrument / Gear | |
Instrument Type | |
Description |
Platforms
Platform Unavailable Reason |
---|
Identifier | |||||||
---|---|---|---|---|---|---|---|
Docucomp UUID | |||||||
Description | |||||||
Mounted Instruments |
|||||||
|
Identifier | |||||||
---|---|---|---|---|---|---|---|
Docucomp UUID | |||||||
Description | |||||||
Mounted Instruments |
|||||||
|
Identifier | |||||||
---|---|---|---|---|---|---|---|
Docucomp UUID | |||||||
Description | |||||||
Mounted Instruments |
|||||||
|
FAQs
Date | |
---|---|
Author | |
Question | |
Answer |
Child Items
Rubric scores updated every 15m
Score | Type | Title |
---|---|---|
Related Items
Item Type | Relationship Type | Title |
---|---|---|
Catalog Details
Catalog Item ID | 20575 |
---|---|
Metadata Record Created By | Robert Marsicek |
Metadata Record Created | 2013-09-05 18:07+0000 |
Metadata Record Last Modified By | SysAdmin InPortAdmin |
» Metadata Record Last Modified | 2022-08-09 17:11+0000 |
Metadata Record Published | 2019-06-07 |
Owner Org | NWFSC |
Metadata Publication Status | Published Externally |
Do Not Publish? | N |
Metadata Workflow State | Published / External |
Metadata Last Review Date | 2019-06-07 |
Metadata Review Frequency | 1 Year |
Metadata Next Review Date | 2020-06-07 |
Tags |
---|