20586 Chum and pink salmon genetics (Genetic and life history variation of southern chum and pink salmon) Data Set Published / External 20585 CB Legacy Data Sets Project In Work 2013-08-04 2017-02-07 The distribution of genetic and life history variation in chum (Oncorhynchus keta) and pink (O. gorbuscha) salmon in their southern range in North America is key to understanding the factors that limit their distribution and abundance there. These species have the widest natural spawning distributions for salmon across the Pacific rim, and both species are abundant north of the contiguous 48 United States. However, they become less plentiful and persistent south of Puget Sound. Chum salmon are documented to spawn as far south in North America as San Lorenzo River in California and 322 km upstream in the Sacramento River. At the turn of the 20th century chum salmon was the most abundant salmonid in streams between the Sacramento and Columbia rivers, and over a million chum salmon returned to the Columbia River as late as the 1950s, supporting a thriving commercial fishery in Tillamook Bay, Oregon. Pink salmon are less plentiful in the region but considerable numbers have run into the lower Columbia River in past decades, and they are occasionally observed in small numbers in the Trinity River, California. Currently, chum and pink salmon populations south of the Columbia River have all but vanished, and Columbia River chum salmon are now listed under the ESA as a threatened species. The demographics, genetics, and life history of these southern populations has not been well documented; this project is an attempt to collect available information on them. Tissues collected from Washington and Oregon adult spawners and carcasses between 2009 and present for DNA extraction. Raw/field data, Monitoring or sensor data, Laboratory data Loaded by FGDC Metadata Uploader, batch 4710, 09-09-2013 13:48 Subject to Public Access to Research Results (PARR): Yes Theme genetics Theme life history Spatial NWFSC Montlake Instrument DNA Sequencer Northwest Fisheries Science Center Seattle WA USA Data Set Spreadsheet Table (digital) DNA Sequencer Platform Not Applicable Not Applicable 36781 Oregon Chum Salmon Size at Age and Environmental Indicators Published / External Planned Time series of adult chum salmon mean size at age. Spreadsheet Yes PARR Time series of adult chum salmon mean size at age. 1 Year that data were taken NUMBER 4 Yes No Active The year that the data were taken. Units for values are yr. NUMBER yr 1900-2017 2 Mean fork length of age 3 chum from Kilchis R NUMBER 4 No No Active Mean fork length of age 3 adult chum salmon from Kilchis R, Oregon. Units for values are mm. NUMBER mm 500-750 3 Mean fork length of age 3 chum from Miami R NUMBER 4 No No Active Mean fork length of age 3 adult chum salmon from Miami R, Oregon. Units for values are mm. NUMBER mm 500-751 4 Mean fork length of age 3 chum from Nehalem R NUMBER 4 No No Active Mean fork length of age 3 adult chum salmon from Nehalem R, Oregon. Units for values are mm. NUMBER mm 500-752 5 Mean fork length of age 3 chum from Wilson R NUMBER 4 No No Active Mean fork length of age 3 adult chum salmon from Wilson R, Oregon. Units for values are mm. NUMBER mm 500-753 6 Mean fork length of age 3 chum from Yaquina R NUMBER 4 No No Active Mean fork length of age 3 adult chum salmon from Yaquina R, Oregon. Units for values are mm. NUMBER mm 500-754 7 Mean fork length of age 3 chum from all rivers except Yaquina NUMBER 4 No No Active Mean fork length of age 3 adult chum salmon from all Oregon rivers except Yaquina. Units for values are mm. NUMBER mm 500-755 8 Mean fork length of age 3 chum from all five rivers NUMBER 4 No No Active Mean fork length of age 3 adult chum salmon from all five Oregon rivers. Units for values are mm. NUMBER mm 500-756 9 Mean fork length of age 4 chum from Kilchis R NUMBER 4 No No Active Mean fork length of age 4 adult chum salmon from Kilchis R, Oregon. Units for values are mm. NUMBER mm 500-757 10 Mean fork length of age 4 chum from Miami R NUMBER 4 No No Active Mean fork length of age 4 adult chum salmon from Miami R, Oregon. Units for values are mm. NUMBER mm 500-758 11 Mean fork length of age 4 chum from Nehalem R NUMBER 4 No No Active Mean fork length of age 4 adult chum salmon from Nehalem R, Oregon. Units for values are mm. NUMBER mm 500-759 12 Mean fork length of age 4 chum from Wilson R NUMBER 4 No No Active Mean fork length of age 4 adult chum salmon from Wilson R, Oregon. Units for values are mm. NUMBER mm 500-760 13 Mean fork length of age 4 chum from Yaquina R NUMBER 4 No No Active Mean fork length of age 4 adult chum salmon from Yaquina R, Oregon. Units for values are mm. NUMBER mm 500-761 14 Mean fork length of age 4 chum from all rivers except Yaquina NUMBER 4 No No Active Mean fork length of age 4 adult chum salmon from all Oregon rivers except Yaquina. Units for values are mm. NUMBER mm 500-762 15 Mean fork length of age 4 chum from all five rivers NUMBER 4 No No Active Mean fork length of age 4 adult chum salmon from all five Oregon rivers. Units for values are mm. NUMBER mm 500-763 16 Mean fork length of age 5 chum from Kilchis R NUMBER 4 No No Active Mean fork length of age 5 adult chum salmon from Kilchis R, Oregon. Units for values are mm. NUMBER mm 500-764 17 Mean fork length of age 5 chum from Miami R NUMBER 4 No No Active Mean fork length of age 5 adult chum salmon from Miami R, Oregon. Units for values are mm. NUMBER mm 500-765 18 Mean fork length of age 5 chum from Nehalem R NUMBER 4 No No Active Mean fork length of age 5 adult chum salmon from Nehalem R, Oregon. Units for values are mm. NUMBER mm 500-766 19 Mean fork length of age 5 chum from Wilson R NUMBER 4 No No Active Mean fork length of age 5 adult chum salmon from Wilson R, Oregon. Units for values are mm. NUMBER mm 500-767 20 Mean fork length of age 5 chum from Yaquina R NUMBER 4 No No Active Mean fork length of age 5 adult chum salmon from Yaquina R, Oregon. Units for values are mm. NUMBER mm 500-768 21 Mean fork length of age 5 chum from all rivers except Yaquina NUMBER 4 No No Active Mean fork length of age 5 adult chum salmon from all Oregon rivers except Yaquina. Units for values are mm. NUMBER mm 500-769 22 Mean fork length of age 5 chum from all five rivers NUMBER 4 No No Active Mean fork length of age 5 adult chum salmon from all five Oregon rivers. Units for values are mm. NUMBER mm 500-770 23 Coastal upwelling index, winter NUMBER 3 No No Active Coastal upwelling index, winter (45 degrees N latitude). NUMBER -10 - 10 24 Coastal upwelling index, summer NUMBER 3 No No Active Coastal upwelling index, summer (45 degrees N latitude). NUMBER -10 - 10 25 Coastal upwelling index, spring NUMBER 3 No No Active Coastal upwelling index, spring (45 degrees N latitude). NUMBER -10 - 10 26 Coastal upwelling index, autumn NUMBER 3 No No Active Coastal upwelling index, autumn (45 degrees N latitude). NUMBER -10 - 10 27 Pacific Decadal Oscillation, winter NUMBER 3 No No Active Pacific Decadal Oscillation, winter (45 degrees N latitude). NUMBER -10 - 10 28 Pacific Decadal Oscillation, summer NUMBER 4 No No Active Pacific Decadal Oscillation, summer (45 degrees N latitude). NUMBER -10 - 10 29 Pacific Decadal Oscillation, spring NUMBER 3 No No Active Pacific Decadal Oscillation, spring (45 degrees N latitude). NUMBER -10 - 10 30 Pacific Decadal Oscillation, autumn NUMBER 3 No No Active Pacific Decadal Oscillation, autumn (45 degrees N latitude). NUMBER -10 - 10 31 Pacific Decadal Oscillation, December to March NUMBER 3 No No Active Pacific Decadal Oscillation, December to March (45 degrees N latitude). NUMBER -10 - 10 32 Pacific Decadal Oscillation, May to September NUMBER 3 No No Active Pacific Decadal Oscillation, May to September (45 degrees N latitude). NUMBER -10 - 10 33 Oceanic Nino Index NUMBER 3 No No Active Oceanic Nino Index (45 degrees N latitude). NUMBER -10 - 10 34 Sea surface temperature at 46050 NUMBER 4 No No Active Sea surface temperature at station 46050. Units for values are degrees C. NUMBER degrees C 0-20 35 Sea surface temperature at 46050 Nov - Mar NUMBER 4 No No Active Sea surface temperature at station 46050. Units for values are degrees C. NUMBER degrees C 0-20 36 Sea surface temperature at 46050 May - Sep NUMBER 4 No No Active Sea surface temperature at station 46050. Units for values are degrees C. NUMBER degrees C 0-20 37 Deep temperature NUMBER 3 No No Active Temperature at 50 m depth (45 degrees N latitude). Units for values are degrees C. NUMBER degrees C 0-10 38 Deep salinity NUMBER 4 No No Active Salinity at 50 m depth (45 degrees N latitude). Units for values are parts per thousand. NUMBER parts per thousand 30-35 39 Copepod richness NUMBER 3 No No Active Species diversity anomaly of sampled copepods (45 degrees N latitude). NUMBER -10 - 10 40 Northern copepod biomass NUMBER 3 No No Active Biomass anomaly of northern copepods sampled (45 degrees N latitude). Units for values are log base 10 of average kg. NUMBER log base 10 of average kg - 1 - 1 41 Southern copepod biomass NUMBER 3 No No Active Biomass anomaly of southern copepods sampled (45 degrees N latitude). Units for values are log base 10 of average kg. NUMBER log base 10 of average kg - 1 - 1 42 Biological transition NUMBER 3 No No Active Date of biological transition (45 degrees N latitude). Units for values are Julian date. NUMBER Julian date 0-365 43 Winter ichthyoplankton NUMBER 3 No No Active Winter ichthyoplankton ordination score (45 degrees N latitude). NUMBER 0-10 44 June salmon catch per unit effort NUMBER 3 No No Active June salmon catch per unit effort (45 degrees N latitude). Units for values are salmon per km towed. NUMBER salmon per km towed 0-10 45 June coho catch per unit effort NUMBER 3 No No Active June coho catch per unit effort (45 degrees N latitude). Units for values are salmon per km towed. NUMBER salmon per km towed 0-10 46 Spring transition upwelling index NUMBER 3 No No Active Spring transition upwelling index (45 degrees N latitude). Units for values are Julian date. NUMBER Julian date 0-365 47 Spring hydrological transition NUMBER 3 No No Active Spring hydrological transition (45 degrees N latitude). Units for values are Julian date. NUMBER Julian date 0-365 48 Upwelling, April-May NUMBER 2 No No Active Upwelling, April-May (45 degrees N latitude). NUMBER -100 - 100 49 Length of the upwelling index season NUMBER 3 No No Active Length of the upwelling index season (45 degrees N latitude). Units for values are days. NUMBER days 0-365 50 Copepod community index NUMBER 3 No No Active Copepod community index ordination score (45 degrees N latitude). NUMBER -1 - 1 Data Steward 2015-10-01 Person Hard, Jeff Jeff.Hard@noaa.gov 2725 Montlake Boulevard East Seattle WA 98112 206-860-3275 Distributor 2015-10-01 Organization Northwest Fisheries Science Center NWFSC nmfs.nwfsc.metadata@noaa.gov https://ror.org/05r7z1k40 2725 Montlake Boulevard East Seattle WA 98112 USA 206-860-3200 https://www.nwfsc.noaa.gov NWFSC Home Online Resource Metadata Contact 2015-10-01 Organization Northwest Fisheries Science Center NWFSC nmfs.nwfsc.metadata@noaa.gov https://ror.org/05r7z1k40 2725 Montlake Boulevard East Seattle WA 98112 USA 206-860-3200 https://www.nwfsc.noaa.gov NWFSC Home Online Resource Originator 2015-10-01 Person Hard, Jeff Jeff.Hard@noaa.gov 2725 Montlake Boulevard East Seattle WA 98112 206-860-3275 Point of Contact 2015-10-01 Person Hard, Jeff Jeff.Hard@noaa.gov 2725 Montlake Boulevard East Seattle WA 98112 206-860-3275 -122.3062 -122.3062 47.6449 47.6449 NWFSC Montlake: Northwest Fisheries Science Center, Seattle, WA USA Continuing 2011-10-01 Unclassified At this time, contact the Data Manager for information on obtaining access to this data set. In the near future, the NWFSC will strive to provide all non-sensitive data resources as a web service in order to meet the NOAA Data Access Policy Directive (https://nosc.noaa.gov/EDMC/PD.DA.php). NA https://www.webapps.nwfsc.noaa.gov/apex/parr/oregon_chum_salmon_size_at_age_and_environmental_indicators/data/page/ 2015-10-01 Organization Northwest Fisheries Science Center https://ror.org/05r7z1k40 Oregon Chum Salmon Size at Age and Environmental I Time series of adult chum salmon mean size at age. https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/tables/table/oregon_chum_salmon_size_at_age_and_environmental_indicators 2015-10-01 Organization Northwest Fisheries Science Center https://ror.org/05r7z1k40 Oregon Chum Salmon Size at Age and Environmental I Time series of adult chum salmon mean size at age. https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/datasets/dataset/10970 Chum and pink salmon genetics Online Resource Web site NWFSC Dataset Information page. Tissues collected from Washington and Oregon adult spawners and carcasses between 2009 and present for DNA extraction Spreadsheet High These data were collected and processed in accordance with established protocols and best practices under the direction of the project’s Principal Investigator. Contact the dataset Data Manager in section 3 for full QA/QC methodology. No 1 No No No 0 days No Delay NCEI-MD 90 The Northwest Fisheries Science Center facilitates backup and recovery of all data and IT components which are managed by IT Operations through the capture of static (point-in-time) backup data to physical media. Once data is captured to physical media (every 1-3 days), a duplicate is made and routinely (weekly) transported to an offsite archive facility where it is maintained throughout the data's applicable life-cycle. Allele frequency data generated from DNA sequence 36781 Entity gov.noaa.nmfs.inport:20586 Robert Marsicek 2013-09-09T13:48:17 SysAdmin InPortAdmin 2026-03-04T19:17:17 2019-06-04 Northwest Fisheries Science Center NWFSC 2725 Montlake Boulevard East Seattle WA 98112 USA 206-860-3200 https://www.nwfsc.noaa.gov 1001 Public No No 2019-06-04 1 Year 2020-06-04