Oyster Larval Survival Counts from Probiotic OY15 Experiments
Northeast Fisheries Science Center
Data Set
(DS)
| ID: 26979
| Published / External
Created: 2015-09-16
|
Last Modified: 2022-08-09
Project (PRJ) | ID: 23140
ID: 26979
Data Set (DS)
* Discovery• First Pass
» Metadata Rubric
Item Identification
* » Title | Oyster Larval Survival Counts from Probiotic OY15 Experiments |
---|---|
Short Name | Probiotic OY15 larval survival counts |
* Status | Completed |
Creation Date | |
Revision Date | |
• Publication Date | 2011 |
* » Abstract |
Environmentally-friendly methods for controlling microbial pathogenesis in aquaculture with probiotic bacteria are becoming increasingly preferred over use of chemical means, such as disinfectants or antibiotics. Recent research at the Milford Laboratory has shown that naturally-occurring bacteria isolated from the digestive glands of adult oysters, Crassostrea virginica, may be used as potential probiotic candidates in oyster larviculture. Probiotic candidate selection was based upon the Kirby Bauer Disc Diffusion Method, in which zones of inhibition suggested competitive exclusion of a known shellfish larvae pathogen (B183). In challenge studies, survival of 2-day old oyster larvae supplemented with probiotic candidate OY15 (Vibrio sp.) was similar (p<0.3883) to that of control larvae (no added bacteria), indicating no harmful effects. Further, addition of OY15 to oyster larvae challenged with B183 significantly improved survival (p<0.0141) compared to the pathogen alone. An in vitro study to determine the effects of OY15 or the pathogen B183 upon oyster hemocytes and their immune functions demonstrated immuno-stimulation of oyster hemocytes by OY15 and immune-suppression by B183, suggesting an immuno-modulation mechanism for OY15. |
* Purpose |
Environmentally-friendly methods for controlling microbial pathogenesis in aquaculture with probiotic bacteria are becoming increasingly preferred over use of chemical means, such as disinfectants or antibiotics. Recent research at the Milford Laboratory has shown that naturally-occurring bacteria isolated from the digestive glands of adult oysters, Crassostrea virginica, may be used as potential probiotic candidates in oyster larviculture. |
Notes | |
Other Citation Details | |
• Supplemental Information |
ISOLATION AND EVALUATION OF NEW PROBIOTIC BACTERIA FOR USE IN SHELLFISH HATCHERIES: I. ISOLATION AND SCREENING FOR BIOACTIVITY. H. J. LIM, D. KAPAREIKO, E. J. SCHOTT, A. HANIF AND G. H. WIKFORS. Journal of Shellfish Research, Vol. 30, No. 3, 609–615, 2011. |
DOI (Digital Object Identifier) | |
DOI Registration Authority | |
DOI Issue Date |
Keywords
Theme Keywords
Thesaurus | Keyword |
---|---|
None | Crassostrea virginica |
None | disease prevention |
None | larvae survival |
None | oyster larviculture |
None | probiotic bacteria |
None | shellfish larvae |
None | Vibrio |
Temporal Keywords
Thesaurus | Keyword |
---|---|
None | spring |
* Spatial Keywords
Thesaurus | Keyword |
---|---|
None | Northeastern United States |
Stratum Keywords
Thesaurus | Keyword |
---|---|
None | Shellfish hatcheries |
Instrument Keywords
Thesaurus | Keyword |
---|---|
Platform Keywords
Thesaurus | Keyword |
---|---|
Physical Location
• » Organization | NEFSC Milford Lab |
---|---|
• » City | Milford |
• » State/Province | CT |
• Country | USA |
• » Location Description |
Data Set Information
* Data Set Scope Code | Data Set |
---|---|
• Data Set Type | MS Excel Spreadsheet |
• Maintenance Frequency | As Needed |
Maintenance Note | |
» Data Presentation Form | Table (digital) |
• Entity Attribute Overview | |
Entity Attribute Detail Citation | |
Entity Attribute Detail URL | |
Distribution Liability | |
Data Set Credit |
Support Roles
* » Support Role | Data Steward |
---|---|
* » Date Effective From | 2011 |
Date Effective To | |
Person | Kapareiko, Diane N |
Address |
212 Rogers Avenue Milford, CT 06460-6499 USA |
Email Address | diane.kapareiko@noaa.gov |
Phone | 203-882-6539 |
Fax | 203-882-6570 |
Mobile | |
URL | |
Business Hours | |
Contact Instructions |
* » Support Role | Data Steward |
---|---|
* » Date Effective From | 2011 |
Date Effective To | |
Person | Wikfors, Gary H |
Address |
212 Rogers Avenue Milford, CT 06460-6499 USA |
Email Address | gary.wikfors@noaa.gov |
Phone | 203-882-6525 |
Fax | 203-882-6570 |
Mobile | |
URL | |
Business Hours | |
Contact Instructions |
* » Support Role | Distributor |
---|---|
* » Date Effective From | 2011 |
Date Effective To | |
Organization | Northeast Fisheries Science Center (NEFSC) |
Address |
166 Water Street Woods Hole, MA 02543-1026 USA |
Email Address | |
Phone | (508)495-2000 |
Fax | |
Mobile | |
URL | https://www.fisheries.noaa.gov/about/northeast-fisheries-science-center |
Business Hours | 8:00 a.m. to 4:30 p.m. Monday - Friday |
Contact Instructions |
* » Support Role | Metadata Contact |
---|---|
* » Date Effective From | 2015 |
Date Effective To | |
Person | Kapareiko, Diane N |
Address |
212 Rogers Avenue Milford, CT 06460-6499 USA |
Email Address | diane.kapareiko@noaa.gov |
Phone | 203-882-6539 |
Fax | 203-882-6570 |
Mobile | |
URL | |
Business Hours | |
Contact Instructions |
* » Support Role | Metadata Contact |
---|---|
* » Date Effective From | 2015 |
Date Effective To | |
Person | Wikfors, Gary H |
Address |
212 Rogers Avenue Milford, CT 06460-6499 USA |
Email Address | gary.wikfors@noaa.gov |
Phone | 203-882-6525 |
Fax | 203-882-6570 |
Mobile | |
URL | |
Business Hours | |
Contact Instructions |
* » Support Role | Originator |
---|---|
* » Date Effective From | 2011 |
Date Effective To | |
Person | Kapareiko, Diane N |
Address |
212 Rogers Avenue Milford, CT 06460-6499 USA |
Email Address | diane.kapareiko@noaa.gov |
Phone | 203-882-6539 |
Fax | 203-882-6570 |
Mobile | |
URL | |
Business Hours | |
Contact Instructions |
* » Support Role | Originator |
---|---|
* » Date Effective From | 2011 |
Date Effective To | |
Person | Wikfors, Gary H |
Address |
212 Rogers Avenue Milford, CT 06460-6499 USA |
Email Address | gary.wikfors@noaa.gov |
Phone | 203-882-6525 |
Fax | 203-882-6570 |
Mobile | |
URL | |
Business Hours | |
Contact Instructions |
* » Support Role | Point of Contact |
---|---|
* » Date Effective From | 2011 |
Date Effective To | |
Person | Wikfors, Gary H |
Address |
212 Rogers Avenue Milford, CT 06460-6499 USA |
Email Address | gary.wikfors@noaa.gov |
Phone | 203-882-6525 |
Fax | 203-882-6570 |
Mobile | |
URL | |
Business Hours | |
Contact Instructions |
* » Support Role | Point of Contact |
---|---|
* » Date Effective From | 2011 |
Date Effective To | |
Person | Kapareiko, Diane N |
Address |
212 Rogers Avenue Milford, CT 06460-6499 USA |
Email Address | diane.kapareiko@noaa.gov |
Phone | 203-882-6539 |
Fax | 203-882-6570 |
Mobile | |
URL | |
Business Hours | |
Contact Instructions |
* » Support Role | |
---|---|
* » Date Effective From | |
Date Effective To | |
* » Contact | |
* Contact Instructions |
* » Support Role | |
---|---|
* » Date Effective From | |
Date Effective To | |
* » Contact | |
* Contact Instructions |
* » Support Role | |
---|---|
* » Date Effective From | |
Date Effective To | |
* » Contact | |
* Contact Instructions |
Extents
Currentness Reference |
---|
Extent Group 1
Extent Description |
---|
Extent Group 1 / Geographic Area 1
* » W° Bound | -73.053572 |
---|---|
* » E° Bound | -73.053572 |
* » N° Bound | 41.212161 |
* » S° Bound | 41.212161 |
* » Description |
Oysters cultured, bled or spawned occurred at the Milford Laboratory with the above latitude and longitude. |
Extent Group 1 / Vertical Extent
EPSG Code | |
---|---|
Vertical Minimum | |
Vertical Maximum |
Extent Group 1 / Time Frame 1
* » Time Frame Type | Range |
---|---|
* » Start | 2006 |
End | 2011 |
Alternate Start As Of Info | |
Alternate End As Of Info | |
Description |
Bacterial culturing of digestive glands of oysters began 2006 resulting in 2011 publications. |
Spatial Information
Spatial Resolution
Angular Distance | |
---|---|
Angular Distance Units | |
Horizontal Distance | |
Horizontal Distance Units | |
Vertical Distance | |
Vertical Distance Units | |
Equivalent Scale Denominator | |
Level of Detail Description |
|
Spatial Representation
Grid Representation Used? | |
---|---|
Vector Representation Used? | |
Text / Table Representation Used? | |
TIN Representation Used? | |
Stereo Model Representation Used? | |
Video Representation Used? |
Grid Representation
Dimension Count | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cell Geometry | |||||||||||||
Transformation Parameter Available? | |||||||||||||
Axis Dimension |
|||||||||||||
|
|||||||||||||
Axis Dimension |
|||||||||||||
|
Vector Representation
Topology Level | |
---|---|
Complex Object Present? | |
Complex Object Count | |
Composite Object Present? | |
Composite Object Count | |
Curve Object Present? | |
Curve Object Count | |
Point Object Present? | |
Point Object Count | |
Solid Object Present? | |
Solid Object Count | |
Surface Object Present? | |
Surface Object Count |
Reference Systems
Reference System
EPSG Code | |||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Horizontal Resolution |
|||||||||||||||||||||||||||||
|
|||||||||||||||||||||||||||||
Vertical Resolution |
|||||||||||||||||||||||||||||
|
Access Information
Data License | |
---|---|
Data License URL | |
Data License Statement | |
* » Security Class | Unclassified |
* Security Classification System | |
Security Handling Description | |
• Data Access Policy | |
» Data Access Procedure |
See Data Access Constraints NEFSC Data Access Procedure: 1. Formal request in writing usually to the data owner/contact or Center Director; 2. Requester is contacted by data owner to review and verify the request content and details for data delivery options. 3. If data is confidential then owner will determine if the data may be released to the requester; 4. If data can be released, the data is downloaded and packaged for delivery electronically; or the requester may be directed to where the data is available online. |
• » Data Access Constraints |
The Milford laboratory is currently involved in a CRADA (Cooperative Research and Development Agreement) with Envera LLC, to mass-culture Milford probiotic strain OY15 and make freeze-dried or spray-dried formulations. This may cause a constraint on access to the data as intellectual property, until the CRADA has been completed (June 2016) and agreed upon with collaborators. NEFSC Data Access Constraint: If data is stored on an internal NEFSC network, the requester may not have direct access to query the data unless they are also authorized for network access. |
• Data Use Constraints | |
Metadata Access Constraints | |
Metadata Use Constraints |
Distribution Information
Start Date | |
---|---|
End Date | |
» Download URL | |
Distributor | |
File Name | |
Description | |
File Date/Time | |
File Type | |
FGDC Content Type | |
File Size | |
Application Version | |
Compression | |
Review Status |
Start Date | |
---|---|
End Date | |
» Download URL | |
Distributor | |
File Name | |
Description | |
File Date/Time | |
File Type | |
FGDC Content Type | |
File Size | |
Application Version | |
Compression | |
Review Status |
Start Date | |
---|---|
End Date | |
» Download URL | |
Distributor | |
File Name | |
Description | |
File Date/Time | |
File Type | |
FGDC Content Type | |
File Size | |
Application Version | |
Compression | |
Review Status |
Archive Information
Location | |
---|---|
File Identifier | |
File Name | |
URL | |
Description | |
DOI | |
Archive Date | |
Archive Update Frequency |
Location | |
---|---|
File Identifier | |
File Name | |
URL | |
Description | |
DOI | |
Archive Date | |
Archive Update Frequency |
Location | |
---|---|
File Identifier | |
File Name | |
URL | |
Description | |
DOI | |
Archive Date | |
Archive Update Frequency |
URLs
URL | http://www.bioone.org/doi/full/10.2983/035.030.0303 |
---|---|
Name | |
URL Type | Online Resource |
File Resource Format | |
Description |
ISOLATION AND EVALUATION OF NEW PROBIOTIC BACTERIA FOR USE IN SHELLFISH HATCHERIES: I. ISOLATION AND SCREENING FOR BIOACTIVITY. Journal of Shellfish Research, Vol. 30, No. 3, 609–615, 2011 |
URL | http://www.bioone.org/doi/full/10.2983/035.030.0304 |
---|---|
Name | |
URL Type | Online Resource |
File Resource Format | |
Description |
ISOLATION AND EVALUATION OF NEW PROBIOTIC BACTERIA FOR USE IN SHELLFISH HATCHERIES: II. EFFECTS OF A VIBRIO SP. PROBIOTIC CANDIDATE UPON SURVIVAL OF OYSTER LARVAE (CRASSOSTREA VIRGINICA) IN PILOT-SCALE TRIALS. Journal of Shellfish Research, Vol. 30, No. 3, 617–625, 2011. |
URL | |
---|---|
Name | |
URL Type | |
File Resource Format | |
Description |
URL | |
---|---|
Name | |
URL Type | |
File Resource Format | |
Description |
URL | |
---|---|
Name | |
URL Type | |
File Resource Format | |
Description |
Activity Log
Activity Time | |
---|---|
Activity Type | |
Responsible Party | |
Description |
Activity Time | |
---|---|
Activity Type | |
Responsible Party | |
Description |
Activity Time | |
---|---|
Activity Type | |
Responsible Party | |
Description |
Issues
Issue Date | |
---|---|
Author | |
Issue |
Issue Date | |
---|---|
Author | |
Issue |
Issue Date | |
---|---|
Author | |
Issue |
Technical Environment
Description |
Microsoft Excel 2010, Windows 7 Professional, summer 2013 oyster larvae challenges.xls, 33kb |
---|
Data Quality
Representativeness | |
---|---|
Accuracy |
Larval counts are performed on a random 1ml subsample raken from a well-mixed, 250ml concentrated volume of larvae in seawater. |
Analytical Accuracy | |
Horizontal Positional Accuracy | |
Vertical Positional Accuracy | |
Quantitation Limits | |
Bias | |
Comparability | |
Completeness Measure | |
Precision | |
Analytical Precision | |
Field Precision | |
Sensitivity | |
Detection Limit | |
Completeness Report |
On rare occasion, a count may be missing from the database due to accidental loss of sample. |
Conceptual Consistency | |
» Quality Control Procedures Employed |
Data validation during data entry |
Data Management
» Have Resources for Management of these Data Been Identified? | Yes |
---|---|
» Approximate Percentage of Budget for these Data Devoted to Data Management | Unknown |
» Do these Data Comply with the Data Access Directive? | Yes |
» Is Access to the Data Limited Based on an Approved Waiver? | Yes |
» If Distributor (Data Hosting Service) is Needed, Please Indicate | |
» Approximate Delay Between Data Collection and Dissemination | 6 months |
» If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed | |
» Actual or Planned Long-Term Data Archive Location | No Archiving Intended |
» If To Be Determined, Unable to Archive, or No Archiving Intended, Explain |
waiver until the CRADA (Cooperative Research and Development Agreement) has been completed (June 2016) and agreed upon with collaborators. |
» Approximate Delay Between Data Collection and Archiving | Unknown |
» How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive? |
Regularly-scheduled desktop and network backups for disaster recovery and contingency planning. |
Lineage
» Lineage Statement |
Fisher's Island oysters spawned at the Milford Laboratory, and larval bioassays run with 4 treatments: no bacteria control, probiotic OY15, pathogen B183 (Vibrio Corallilyticus) and combination treatment with OY15+B183. Bacteria were dosed every other day and larvae subsamples were taken for survival counts. |
---|
Sources
Citation Title | |
---|---|
Contact Role Type | |
Contact Type | |
Contact Name | |
Publish Date | |
Extent Type | |
Extent Start Date/Time | |
Extent End Date/Time | |
Citation URL | |
Citation URL Name | |
Citation URL Description | |
Scale Denominator |
Citation Title | |
---|---|
Contact Role Type | |
Contact Type | |
Contact Name | |
Publish Date | |
Extent Type | |
Extent Start Date/Time | |
Extent End Date/Time | |
Citation URL | |
Citation URL Name | |
Citation URL Description | |
Scale Denominator |
Citation Title | |
---|---|
Contact Role Type | |
Contact Type | |
Contact Name | |
Publish Date | |
Extent Type | |
Extent Start Date/Time | |
Extent End Date/Time | |
Citation URL | |
Citation URL Name | |
Citation URL Description | |
Scale Denominator |
Process Steps
Process Step Number | |
---|---|
» Description | |
Process Date/Time | |
Process Contact | |
Phone (Voice) | |
Email Address | |
Source |
Process Step Number | |
---|---|
» Description | |
Process Date/Time | |
Process Contact | |
Phone (Voice) | |
Email Address | |
Source |
Process Step Number | |
---|---|
» Description | |
Process Date/Time | |
Process Contact | |
Phone (Voice) | |
Email Address | |
Source |
Acquisition Information
Instruments
Instrument Unavailable Reason |
---|
Identifier | |
---|---|
Docucomp UUID | |
Instrument / Gear | |
Instrument Type | |
Description |
Identifier | |
---|---|
Docucomp UUID | |
Instrument / Gear | |
Instrument Type | |
Description |
Identifier | |
---|---|
Docucomp UUID | |
Instrument / Gear | |
Instrument Type | |
Description |
Platforms
Platform Unavailable Reason |
---|
Identifier | |||||||
---|---|---|---|---|---|---|---|
Docucomp UUID | |||||||
Description | |||||||
Mounted Instruments |
|||||||
|
Identifier | |||||||
---|---|---|---|---|---|---|---|
Docucomp UUID | |||||||
Description | |||||||
Mounted Instruments |
|||||||
|
Identifier | |||||||
---|---|---|---|---|---|---|---|
Docucomp UUID | |||||||
Description | |||||||
Mounted Instruments |
|||||||
|
FAQs
Date | |
---|---|
Author | |
Question | |
Answer |
Child Items
Rubric scores updated every 15m
Related Items
Item Type | Relationship Type | Title |
---|---|---|
Catalog Details
Catalog Item ID | 26979 |
---|---|
Metadata Record Created By | Patricia L Jones |
Metadata Record Created | 2015-09-16 10:19+0000 |
Metadata Record Last Modified By | SysAdmin InPortAdmin |
» Metadata Record Last Modified | 2022-08-09 17:11+0000 |
Metadata Record Published | 2016-06-28 |
Owner Org | NEFSC |
Metadata Publication Status | Published Externally |
Do Not Publish? | N |
Metadata Workflow State | Published / External |
Metadata Last Review Date | 2016-06-28 |
Metadata Review Frequency | 1 Year |
Metadata Next Review Date | 2017-06-28 |
Tags |
---|