27650
AFSC/FMA/Salmon Genetics From Observer Specimens
AFSC/FMA/Salmon Genetics
Data Set
Published / External
27694
Salmon Genetics From Observer Specimens
Project
In Work
Genetic data of salmon bycatch samples collected by fisheries observers are used for mixed-stock analyses to determine geographic region of origin. This work is done at the Auk Bay Lab in Juneau Alaska. The data are loaded to the the North Pacific Halibut and Groundfish database maintained by FMA Division at the Alaska Fisheries Science Center in Seattle Washington
The results of mixed-stock analyses to determine geographic region of origin for Salmon bycatch in commercial groundfish operations in the Gulf of Alaska and the Bering Sea and Aleutian Islands.
Temporal
Year of Collection
Spatial
Aleutian Islands
Spatial
Bering Sea
Spatial
Gulf of Alaska
Stratum
Allele
Stratum
Genetics
Fisheries Monitoring and Analysis
SEATTLE
WA
US
Alaska Fisheries Science Center
Data Set
Database
As Needed
Table (digital)
Chris Kondzela
N/A
N/A
Tissue Collection
27651
ABL_GEN_SALMON_BYCATCH
Salmon Genetics
Published / External
In Work
Genetic data of salmon bycatch samples used for mixed-stock analyses to determine geographic region of origin.
Data Table
Yes
Salmon Genetics
obsint
These data are the output of genetics analysis of tissues collected by observers at sea.
1
SAL_BYCATCH_SEQ
Number
9
Yes
Yes
9
0
Active
Oracle Generated Unique Identifier of a record
5
CRUISE
Number
9
Yes
No
9
0
Active
Observer Cruise Inherited from debriefed_age
10
PERMIT
VARCHAR2
7
Yes
No
Active
Vessel federal fisheries permit Inherited from debriefed_age
15
SPECIMEN_NUMBER
NUMBER
6
Yes
No
6
0
Active
Inherited from debriefed_age, a specimen number is unique within a cruise, permit, length and specimen type. It is a user defined identifier.
20
HAUL_OFFLOAD
NUMBER
6
Yes
No
6
0
Active
Haul or offload from which the genetics specimen was collected.
25
SPECIMEN_TYPE
NUMBER
2
Yes
No
2
0
Active
Specimen type code. This references the definition about what is being measured or commented.
30
SEX
VARCHAR2
1
Yes
No
Active
Sex either inherited from length or recorded in age/atl_fish_inv_specimen if different.
35
SPECIES
NUMBER
4
Yes
No
4
0
Active
Species either inherited from length or recorded in age/atl_fish_inv_specimen if different.
40
PORT_JOIN
NUMBER
16
No
No
Active
Surrogate FK to offload if length record is so derived. Composed of concatenation of cruise, permit and offload_seq. For domestic table records this is a sequence generated unique identifier for a port.
45
HAUL_JOIN
NUMBER
16
No
No
Active
Surrogate FK to haul if length record is so derived Composed of concatenation of cruise, permit and haul_seq. For domestic table records this is a sequence generated unique identifier for a haul.
50
SPECIMEN_SEQ
NUMBER
9
Yes
No
9
0
Active
Oracle Generated Unique Identifier of a specimen record from the Observer database entered into record by a before insert record trigger on the table.
55
SAMPLE_ID
VARCHAR2
150
No
No
Active
Intelligent key assigned by staff uniquely identifying this record.
60
YEAR
NUMBER
4
No
No
4
0
Active
Year that the genetic sample was collected and analysis done.
65
OKI100_1
NUMBER
3
No
No
3
Active
First allele at genetic marker OKI100
70
OKI100_2
NUMBER
3
No
No
3
0
Active
Second allele at genetic marker OKI100
73
OMM1070_1
NUMBER
3
No
No
3
0
Active
First allele at genetic marker OMM1070
75
OMM1070_2
NUMBER
3
No
No
3
0
Active
Second allele at genetic marker OMM 1070
80
OMY1011_1
NUMBER
3
No
No
3
0
Active
First allele at genetic marker OMY1011
85
OMY1011_2
NUMBER
3
No
No
3
0
Active
Second allele at genetic marker OMY1011
90
ONE101_1
NUMBER
3
No
No
3
0
Active
First allele at genetic marker ONE101
100
ONE101_2
NUMBER
3
No
No
3
0
Active
Second allele at genetic marker ONE102
105
ONE102_1
NUMBER
3
No
No
3
0
Active
First allele at genetic marker ONE102
107
ONE102_2
NUMBER
3
No
No
3
0
Active
Second allele at genetic marker ONE102
110
ONE104_1
NUMBER
3
No
No
3
0
Active
First allele at genetic marker ONE104
112
ONE104_2
NUMBER
3
0
No
No
3
0
Active
Second allele at genetic marker ONE104
115
ONE114_1
NUMBER
3
No
No
3
0
Active
First allele at genetic marker ONE114
120
ONE114_2
NUMBER
3
No
No
3
0
Active
Second allele at genetic marker ONE114
125
OTS103_1
NUMBER
3
No
No
3
0
Active
First allele at genetic marker OTS103
130
OTS103_2
NUMBER
3
No
No
3
0
Active
Second allele at genetic marker OTS103
135
OTS3_1
NUMBER
3
No
No
3
0
Active
First allele at genetic marker OTS3
140
OTS3_2
NUMBER
3
No
No
3
0
Active
Second allele at genetic marker OTS3
145
OTSG68_1
NUMBER
3
No
No
3
0
Active
First allele at genetic marker OTSG68
150
OTSG68_2
NUMBER
3
No
No
3
0
Active
Second allele at genetic marker OTSG68
155
SSA419_1
NUMBER
3
No
No
3
0
Active
First allele at genetic marker SSA419
160
SSA419_2
NUMBER
3
No
No
3
0
Active
Second allele at genetic marker SSA 419
165
BINARY
VARCHAR2
1062
Yes
No
Active
Binary format of alleles at each genetic marker.
Data Steward
2015
Person
Blair, Julie A
julie.blair@noaa.gov
7600 Sandpoint Way NE
Seattle
WA
98115
USA
206 526 4053
(206)526-4066
0700-1630
Email
Distributor
2015
Person
Blair, Julie A
julie.blair@noaa.gov
7600 Sandpoint Way NE
Seattle
WA
98115
USA
206 526 4053
(206)526-4066
0700-1630
Email
Metadata Contact
2015
Person
Blair, Julie A
julie.blair@noaa.gov
7600 Sandpoint Way NE
Seattle
WA
98115
USA
206 526 4053
(206)526-4066
0700-1630
Email
Point of Contact
2015
Person
Kondzela, Chris
Chris.Kondzela@noaa.gov
Email preferred
-175
-135
65
50
Alaska EEZ
Continuing
2013
Confidential
Available to researchers who have an approved confidentiality agreement on file for named research.
Data request presented to FMA division authorized staff.
Confidential observer data
For specific research with confidentiality agreement in place.
None
None
http://www.afsc.noaa.gov/FMA/default.htm
N/A
These data are confidential and not available for download. Contact Chris.Kondzela@noaa.gov for more information
Oracle 11g Database
Any bias present is the result of the observer sampling protocols used to collect the tissue specimens.
Comparisons from year to year must consider the geographic range of the sample
These data are reviewed by staff at the Ted Stevens Marine Research Institute prior to loading into the database.
Yes
Unknown
No
Yes
N/A
N/A
Under the Magnuson-Stevens Act section 402(b)(2) any observer data shall be confidential and shall not be disclosed except in accordance with certain exceptions. Confidentiality of observer statistics is to be maintained under 50 CFR 600.415 - Access to statistics. Access to these data are provided to Federal, State, Council, Research Institutions and others who have a demonstrated need for such access, and who have submitted and been been granted approval, of limited access confidentiality agreements. These agreements are valid only for the duration of approved projects or research, the data released
No Archiving Intended
N/A
These data are maintained in backed up and mirrored databases. Further the original analysis results are retained indefinitely.
These data are the output of genetics analysis of tissues collected by observers at sea.
27651
Entity
ABL_GEN_SALMON_BYCATCH
gov.noaa.nmfs.inport:27650
Julie Blair
2015-10-02T16:43:24
SysAdmin InPortAdmin
2022-08-09T17:11:06
2016-05-18
Alaska Fisheries Science Center
AFSC
7600 Sand Point Way N.E., Building 4
Seattle
WA
98115
USA
http://www.afsc.noaa.gov
0700-1700 Pacific Time
1001
Public
No
2016-05-18
1 Year
2017-05-18