AFSC/RACE/SAP/Pathobiology: 2016 Bitter crab disease prevalence in Chionoecetes spp. from eastern Bering Sea upper continental slope
Alaska Fisheries Science Center
Data Set
(DS)
| ID: 36062
| Published / External
Created: 2016-12-20
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Last Modified: 2024-01-15
Project (PRJ) | ID: 22354
ID: 36062
Data Set (DS)
* Discovery• First Pass
» Metadata Rubric
Item Identification
* » Title | AFSC/RACE/SAP/Pathobiology: 2016 Bitter crab disease prevalence in Chionoecetes spp. from eastern Bering Sea upper continental slope |
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Short Name | AFSC/RACE/SAP/Pathobiology: 2016 Bitter crab disease prevalence in Chionoecetes spp. from eastern Bering Sea upper continental slope |
* Status | In Work |
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• Publication Date | |
* » Abstract |
This dataset contains crab data from a field survey of Chionoecetes spp. collected during the 2016 NOAA/NMFS/AFSC/RACE groundfish and invertebrate resources bottom trawl survey of the eastern Bering Sea continental slope (EBSS). Crabs were taken opportunistically, at any station regardless of location and depth, and at random. Blood samples were taken from collected crab using non-lethal methods and were preserved in 100% ethanol. Samples were tested in a laboratory with a DNA test to detect the presence of the parasite Hematodinium sp., the causative agent of Bitter Crab Syndrome (BCS). The data includes sampling year, sampling station information, species, crab morphometrics, Hematodinium sp. parasite presence/absence based on PCR assay results. |
* Purpose |
To track the presense of Hematodinium within Chionoecetes spp. in the eastern Bering Sea upper continental slope. |
Notes |
Loaded by FGDC Metadata Uploader, batch 9611, 12-20-2016 13:28 The following FGDC sections are not currently supported in InPort, but were preserved and will be included in the FGDC export: - Taxonomy (FGDC:taxonomy) |
Other Citation Details | |
• Supplemental Information | |
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Keywords
Theme Keywords
Thesaurus | Keyword |
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ISO 19115 Topic Category | biota |
ISO 19115 Topic Category | oceans |
None | bottom trawl |
None | disease |
Temporal Keywords
Thesaurus | Keyword |
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None | summer |
* Spatial Keywords
Thesaurus | Keyword |
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None | Alaska |
None | Bering Sea |
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Physical Location
• » Organization | Alaska Fisheries Science Center |
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• » City | Seattle |
• » State/Province | WA |
• Country | USA |
• » Location Description |
Data Set Information
* Data Set Scope Code | Data Set |
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• Data Set Type | MS Excel |
• Maintenance Frequency | As Needed |
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» Data Presentation Form | Table (digital) |
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Distribution Liability |
The user is responsible for the results of any application of this data for other than its intended purpose. NOAA denies liability if the data are misused. |
Data Set Credit |
Support Roles
* » Support Role | Data Steward |
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* » Date Effective From | 2016 |
Date Effective To | |
Person | Jensen, Pam |
Email Address | pam.jensen@noaa.gov |
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* » Support Role | Distributor |
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* » Date Effective From | 2016-12-20 |
Date Effective To | |
Person | Foy, Robert |
Email Address | robert.foy@noaa.gov |
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* » Support Role | Metadata Contact |
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* » Date Effective From | 2016-12-20 |
Date Effective To | |
Person | MC, Metadata Coordinators |
Email Address | AFSC.metadata@noaa.gov |
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* » Support Role | Originator |
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* » Date Effective From | 2016-12-20 |
Date Effective To | |
Organization | Alaska Fisheries Science Center (AFSC) |
Address |
7600 Sand Point Way N.E., Building 4 Seattle, WA 98115 USA |
Email Address | afsc.webmaster@noaa.gov |
Phone | (206) 526-4000 |
Fax | (206) 526-4004 |
Mobile | |
URL | https://www.fisheries.noaa.gov/about/alaska-fisheries-science-center |
Business Hours | 0700-1700 Pacific Time |
Contact Instructions |
* » Support Role | Point of Contact |
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* » Date Effective From | 2016-12-20 |
Date Effective To | |
Person | Jensen, Pam |
Email Address | pam.jensen@noaa.gov |
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Extents
Currentness Reference | Ground Condition |
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Extent Group 1
Extent Description |
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Extent Group 1 / Geographic Area 1
* » W° Bound | -179.483 |
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* » E° Bound | -165.398 |
* » N° Bound | 60.595 |
* » S° Bound | 54.266 |
* » Description |
Eastern Bering Sea, Alaska |
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* » Time Frame Type | Discrete |
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* » Start | 2016 |
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Access Information
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Data License Statement | |
* » Security Class | Unclassified |
* Security Classification System |
unclassified |
Security Handling Description | |
• Data Access Policy | |
» Data Access Procedure |
unknown |
• » Data Access Constraints |
There are no legal restrictions on access to the data. They reside in public domain and can be freely distributed. |
• Data Use Constraints |
User must read and fully comprehend the metadata prior to use. Applications or inferences derived from the data should be carefully considered for accuracy. Acknowledgement of NOAA/NMFS/AFSC, as the source from which these data were obtained in any publications and/or other representations of these, data is suggested. |
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Distribution Information
Start Date | |
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» Download URL | https://console.cloud.google.com/storage/browser/_details/nmfs_odp_afsc/RACE/SAP/Pathobiology%3B%202016%20Bitter%20crab%20disease%20prevalence%20in%20Chionoecetes%20spp.%20from%20eastern%20Bering%20Sea%20upper%20continental%20slope.csv |
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Note: Dataset migrated by Dan Woodrich (AFSC data management coordinator) on 12/15/2021. Contact: Daniel.woodrich@noaa.gov |
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Excel |
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Data is submitted through a thorough QA/QC process. |
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Data set includes data collected from standard and non-standard hauls. |
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Data is checked for values outside range. |
» Quality Control Procedures Employed |
Data is submitted through a thorough QA/QC process. |
Data Management
» Have Resources for Management of these Data Been Identified? | No |
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» Approximate Percentage of Budget for these Data Devoted to Data Management | Unknown |
» Do these Data Comply with the Data Access Directive? | No |
» Is Access to the Data Limited Based on an Approved Waiver? | No |
» If Distributor (Data Hosting Service) is Needed, Please Indicate | Yes |
» Approximate Delay Between Data Collection and Dissemination | unknown |
» If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed |
no delay |
» Actual or Planned Long-Term Data Archive Location | NCEI-MD |
» Approximate Delay Between Data Collection and Archiving | unknown |
» How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive? |
IT Security and Contingency Plan for the system establishes procedures and applies to the functions, operations, and resources necessary to recover and restore data as hosted in the Western Regional Support Center in Seattle, Washington, following a disruption. |
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Process Steps
Process Step Number | 1 |
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» Description |
This dataset contains randomly chosen samples of crab collected from the 2016 NOAA/NMFS/AFSC/RACE groundfish and invertebrate resources bottom trawl survey of the eastern Bering Sea continental slope (EBSS). The survey area extended from Unalaska and Akutan Island to the U.S.-Russian maritime boundary and was divided into six geographic subareas. Each tow is one-half hour in duration with a standard speed of 2.5 knots - exact tow duration and distance fished for each haul can be found in RACEBASE.HAUL. |
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Process Step Number | 2 |
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» Description |
The sex of the crab is identified (1 = Male, 2 = Female). Individual crab carapaces were measured (± 1 mm), excluding spines, and are reported as size. Shell condition class serves as a semi-quantitative index of molt status and time in shell post-molt. Carapace shell condition was assigned to one of six classes according to specific criteria (0 = premolt or molting, 2 = new hardshell both firm and clean, 3 = oldshell slightly worn, 4 = oldshell worn, 5 = very oldshell). Chela height is measured on right chela at greatest distance (± 0.1 mm) excluding spines. Null or blank fields in data represent no chela height information reported for crab specimen. |
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Process Step Number | 3 |
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» Description |
Female crab abdomens were evaluated to determine reproductive condition based on the color of the eggs (0 = no eggs, 4 = orange, 9 = no egg color information reported or does not apply), the condition of the eggs (0 = no eggs, 1 = uneyed, 9 = no egg condition information reported or does not apply), and the size of the egg clutch (0 = immature, 1 = mature female no eggs, 2 = trace to 1/8, 3 = 1/4, 4 = 1/2, 5 = 3/4, 6 = full, 9 = no egg clutch information reported or does not apply). |
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Process Step Number | 4 |
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» Description |
DNA was extracted using modified Ivanova et al. (2006) protocol. Extracted DNA was assayed with two primer sets, targeting either 18S or ITS1 rDNA, to determine presence or absence of Hematodinium spp. Refer to metadata Point of Contact for PCR conditions. PCR Result is identified (0 = negative for Hematodinium DNA, 1 = positive for Hematodinium DNA, 3 = undetermined, at the limit of detection). |
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Acquisition Information
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Child Items
Rubric scores updated every 15m
Score | Type | Title |
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Entity (ENT) | 2016 Slope Collection Data | |
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Catalog Details
Catalog Item ID | 36062 |
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Metadata Record Created By | Christie Lang |
Metadata Record Created | 2016-12-20 13:28+0000 |
Metadata Record Last Modified By | SysAdmin InPortAdmin |
» Metadata Record Last Modified | 2024-01-15 12:08+0000 |
Metadata Record Published | 2016-12-20 |
Owner Org | AFSC |
Metadata Publication Status | Published Externally |
Do Not Publish? | N |
Metadata Workflow State | Published / External |
Metadata Last Review Date | 2016-12-20 |
Metadata Review Frequency | 1 Year |
Metadata Next Review Date | 2017-12-20 |
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