Vibrio Parahaemolyticus Survey Washington 2007-2008
Northwest Fisheries Science Center
Entity
(ENT)
| ID: 36975
| Published / External
Created: 2017-02-28
|
Last Modified: 2022-08-09
Data Set (DS) | ID: 17958
ID: 36975
Entity (ENT)
* Discovery• First Pass
» Metadata Rubric
Item Identification
* » Title | Vibrio Parahaemolyticus Survey Washington 2007-2008 |
---|---|
Short Name | Vibrio Parahaemolyticus Survey Washington 2007-2008 |
* Status | Planned |
Creation Date | |
Revision Date | |
• Publication Date | |
* » Abstract |
Results of a survey for the bacterium Vibrio parahaemolyticus in oyster growing areas of Washington State, 2007-2008. |
* Purpose | |
Notes | |
Other Citation Details | |
• Supplemental Information | |
DOI (Digital Object Identifier) | |
DOI Registration Authority | |
DOI Issue Date |
Keywords
Theme Keywords
Thesaurus | Keyword |
---|---|
Temporal Keywords
Thesaurus | Keyword |
---|---|
* Spatial Keywords
Thesaurus | Keyword |
---|---|
Stratum Keywords
Thesaurus | Keyword |
---|---|
Instrument Keywords
Thesaurus | Keyword |
---|---|
Platform Keywords
Thesaurus | Keyword |
---|---|
Physical Location
• » Organization | |
---|---|
• » City | |
• » State/Province | |
• Country | |
• » Location Description |
Entity Information
Entity Type | Spreadsheet |
---|---|
Active Version? | Y |
Alias | |
Schema Name | PARR |
» Description |
Results of a survey for the bacterium Vibrio parahaemolyticus in oyster growing areas of Washington State, 2007-2008. |
Change Summary |
Data Attributes
Attribute Summary
Score | Req'd? | PKey? | » Name | Data Storage Type | Description |
---|---|---|---|---|---|
100 | No | No | Sample # | NUMBER | Unique identifier for the sample. |
100 | No | No | Date collected | DATE | The date on which physical data and/or biological sample was collected. |
100 | No | No | Sampling time | DATE | Time of sampling given as military time. Units for values are Hour:Minute. |
100 | No | No | Time of low tide | DATE | The most recent low tide closest to the time of the sampling given as military time. Units for values are Hour:Minute. |
100 | No | No | Julian day | NUMBER | The day number for a year. January 1 is Julian day 1 while February 1 is Julian day 32, etc. |
100 | No | No | Site code | VARCHAR2 | A code assigned to the the sampling site by the Washington State Department of Health. |
100 | No | No | Site name | VARCHAR2 | The name of the sampling site. |
100 | No | No | Site latitude | NUMBER | The site latitude, which along with the site longitude unambiguously specifies the site location. |
100 | No | No | Site longitude | NUMBER | The site longitude,which along with the site latitude unambiguously specifies the site location. |
100 | No | No | Air temperature | NUMBER | Air temperature at the sampling site. Units for values are Degrees Centigrade (C). |
100 | No | No | Surface water temperature | NUMBER | The temperature of the surface water at the sampling site. Units for values are Degrees Centigrade (C). |
100 | No | No | Water temperature at -3 feet | NUMBER | The temperature of water 3 feet below the surface at the sampling site. Units for values are Degrees Centigrade (C). |
100 | No | No | Salinity | NUMBER | Salinity of the water at the sampling site. Units for values are Parts per thousand (ppt). |
100 | No | No | Chlorophyll | NUMBER | The chlorophyll content of the water at the sampling site. Units for values are Micrograms per liter of water. |
100 | No | No | Oyster tissue temperature | NUMBER | The temperature of oyster tissue collected at the sampling site. Units for values are Degrees Centigrade (C). |
100 | No | No | Total Vibrio parahaemolyticus, water | NUMBER | Each cell of Vibrio parahaemolyticus (Vp) contains one copy of a gene called tl. Each water sample was analyzed for the number of copies of tl giving a direct measure of the density of Vp in the water column. Not all Vp are virulent. Units for values are Number of cells of Vp per 100 grams of water. |
100 | No | No | tdh+ Vibrio parahaemolyticus, water | NUMBER | The tdh gene is associated with virulence. Each cell of Vp can contain more than one copy of tdh. Therefore, the number of copies of tdh can exceed the number of copies of tl in some samples. Units for values are Number of cells of potentially pathogenic Vp per 100 grams of water. |
100 | No | No | Total Vibrio parahaemolyticus, net tow | NUMBER | At most sites, a large volume of water was filtered through a plankton net with a mesh size of 200 micron. This concentrates particate matter such as plankton to which Vp bacteria can attach. As before, the number of copeis of the tl gene serves to give a direct measure of the density of Vp associated with particles in the water column. Units for values are Number of cells of Vp per 100 grams of water retained in the net tow. |
100 | No | No | tdh+ Vibrio parahaemolyticus, net tow | NUMBER | The number of copies of the virulence-assciated tdh gene detected in net tow samples. Units for values are Number of copies of tdh present per 100 grams of water retained in the net tow. |
100 | No | No | Total Vibrio parahemolyticus, oyster | NUMBER | Oyster tissue is homogenized and analyzed for total V. parahaemolyticus by detection of the the tl gene by the "Most Probable Number (MPN)" method. Units for values are The MPN of Vp per gram of oyster tissue. |
100 | No | No | tdh+ Vibrio parahaemolyticus, oyster | NUMBER | The most probable number of copies of the virulence-associated tdh gene detected in oyster tissue. Units for values are The MPN of copies of tdh per gram of oyster tissue. |
Attribute Details
Attribute Name | Sample # |
---|---|
Seq. Order | 1 |
Data Storage Type | NUMBER |
Max Length | |
Min Length | |
Required | No |
Primary Key | No |
Precision | |
Scale | |
Status | Active |
Description |
Unique identifier for the sample. |
General Data Type | NUMBER |
Unit of Measure | |
Case Restriction | |
Display Example | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Attribute Name | Date collected |
---|---|
Seq. Order | 2 |
Data Storage Type | DATE |
Max Length | |
Min Length | |
Required | No |
Primary Key | No |
Precision | |
Scale | |
Status | Active |
Description |
The date on which physical data and/or biological sample was collected. |
General Data Type | DATE |
Unit of Measure | |
Case Restriction | |
Display Example | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Attribute Name | Sampling time |
---|---|
Seq. Order | 3 |
Data Storage Type | DATE |
Max Length | |
Min Length | |
Required | No |
Primary Key | No |
Precision | |
Scale | |
Status | Active |
Description |
Time of sampling given as military time. Units for values are Hour:Minute. |
General Data Type | DATE |
Unit of Measure | Hour:Minute |
Case Restriction | |
Display Example | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Attribute Name | Time of low tide |
---|---|
Seq. Order | 4 |
Data Storage Type | DATE |
Max Length | |
Min Length | |
Required | No |
Primary Key | No |
Precision | |
Scale | |
Status | Active |
Description |
The most recent low tide closest to the time of the sampling given as military time. Units for values are Hour:Minute. |
General Data Type | DATE |
Unit of Measure | Hour:Minute |
Case Restriction | |
Display Example | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Attribute Name | Julian day |
---|---|
Seq. Order | 5 |
Data Storage Type | NUMBER |
Max Length | |
Min Length | |
Required | No |
Primary Key | No |
Precision | |
Scale | |
Status | Active |
Description |
The day number for a year. January 1 is Julian day 1 while February 1 is Julian day 32, etc. |
General Data Type | NUMBER |
Unit of Measure | |
Case Restriction | |
Display Example | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Attribute Name | Site code |
---|---|
Seq. Order | 6 |
Data Storage Type | VARCHAR2 |
Max Length | |
Min Length | |
Required | No |
Primary Key | No |
Precision | |
Scale | |
Status | Active |
Description |
A code assigned to the the sampling site by the Washington State Department of Health. |
General Data Type | VARCHAR2 |
Unit of Measure | |
Case Restriction | |
Display Example | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Attribute Name | Site name |
---|---|
Seq. Order | 7 |
Data Storage Type | VARCHAR2 |
Max Length | |
Min Length | |
Required | No |
Primary Key | No |
Precision | |
Scale | |
Status | Active |
Description |
The name of the sampling site. |
General Data Type | VARCHAR2 |
Unit of Measure | |
Case Restriction | |
Display Example | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Attribute Name | Site latitude |
---|---|
Seq. Order | 8 |
Data Storage Type | NUMBER |
Max Length | |
Min Length | |
Required | No |
Primary Key | No |
Precision | |
Scale | |
Status | Active |
Description |
The site latitude, which along with the site longitude unambiguously specifies the site location. |
General Data Type | NUMBER |
Unit of Measure | |
Case Restriction | |
Display Example | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Attribute Name | Site longitude |
---|---|
Seq. Order | 9 |
Data Storage Type | NUMBER |
Max Length | |
Min Length | |
Required | No |
Primary Key | No |
Precision | |
Scale | |
Status | Active |
Description |
The site longitude,which along with the site latitude unambiguously specifies the site location. |
General Data Type | NUMBER |
Unit of Measure | |
Case Restriction | |
Display Example | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Attribute Name | Air temperature |
---|---|
Seq. Order | 10 |
Data Storage Type | NUMBER |
Max Length | |
Min Length | |
Required | No |
Primary Key | No |
Precision | |
Scale | |
Status | Active |
Description |
Air temperature at the sampling site. Units for values are Degrees Centigrade (C). |
General Data Type | NUMBER |
Unit of Measure | Degrees Centigrade (C) |
Case Restriction | |
Display Example | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Attribute Name | Surface water temperature |
---|---|
Seq. Order | 11 |
Data Storage Type | NUMBER |
Max Length | |
Min Length | |
Required | No |
Primary Key | No |
Precision | |
Scale | |
Status | Active |
Description |
The temperature of the surface water at the sampling site. Units for values are Degrees Centigrade (C). |
General Data Type | NUMBER |
Unit of Measure | Degrees Centigrade (C) |
Case Restriction | |
Display Example | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Attribute Name | Water temperature at -3 feet |
---|---|
Seq. Order | 12 |
Data Storage Type | NUMBER |
Max Length | |
Min Length | |
Required | No |
Primary Key | No |
Precision | |
Scale | |
Status | Active |
Description |
The temperature of water 3 feet below the surface at the sampling site. Units for values are Degrees Centigrade (C). |
General Data Type | NUMBER |
Unit of Measure | Degrees Centigrade (C) |
Case Restriction | |
Display Example | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Attribute Name | Salinity |
---|---|
Seq. Order | 13 |
Data Storage Type | NUMBER |
Max Length | |
Min Length | |
Required | No |
Primary Key | No |
Precision | |
Scale | |
Status | Active |
Description |
Salinity of the water at the sampling site. Units for values are Parts per thousand (ppt). |
General Data Type | NUMBER |
Unit of Measure | Parts per thousand (ppt) |
Case Restriction | |
Display Example | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Attribute Name | Chlorophyll |
---|---|
Seq. Order | 14 |
Data Storage Type | NUMBER |
Max Length | |
Min Length | |
Required | No |
Primary Key | No |
Precision | |
Scale | |
Status | Active |
Description |
The chlorophyll content of the water at the sampling site. Units for values are Micrograms per liter of water. |
General Data Type | NUMBER |
Unit of Measure | Micrograms per liter of water |
Case Restriction | |
Display Example | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Attribute Name | Oyster tissue temperature |
---|---|
Seq. Order | 15 |
Data Storage Type | NUMBER |
Max Length | |
Min Length | |
Required | No |
Primary Key | No |
Precision | |
Scale | |
Status | Active |
Description |
The temperature of oyster tissue collected at the sampling site. Units for values are Degrees Centigrade (C). |
General Data Type | NUMBER |
Unit of Measure | Degrees Centigrade (C) |
Case Restriction | |
Display Example | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Attribute Name | Total Vibrio parahaemolyticus, water |
---|---|
Seq. Order | 16 |
Data Storage Type | NUMBER |
Max Length | |
Min Length | |
Required | No |
Primary Key | No |
Precision | |
Scale | |
Status | Active |
Description |
Each cell of Vibrio parahaemolyticus (Vp) contains one copy of a gene called tl. Each water sample was analyzed for the number of copies of tl giving a direct measure of the density of Vp in the water column. Not all Vp are virulent. Units for values are Number of cells of Vp per 100 grams of water. |
General Data Type | NUMBER |
Unit of Measure | Number of cells of Vp per 100 grams of water |
Case Restriction | |
Display Example | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Attribute Name | tdh+ Vibrio parahaemolyticus, water |
---|---|
Seq. Order | 17 |
Data Storage Type | NUMBER |
Max Length | |
Min Length | |
Required | No |
Primary Key | No |
Precision | |
Scale | |
Status | Active |
Description |
The tdh gene is associated with virulence. Each cell of Vp can contain more than one copy of tdh. Therefore, the number of copies of tdh can exceed the number of copies of tl in some samples. Units for values are Number of cells of potentially pathogenic Vp per 100 grams of water. |
General Data Type | NUMBER |
Unit of Measure | Number of cells of potentially pathogenic Vp 100 gm of water |
Case Restriction | |
Display Example | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Attribute Name | Total Vibrio parahaemolyticus, net tow |
---|---|
Seq. Order | 18 |
Data Storage Type | NUMBER |
Max Length | |
Min Length | |
Required | No |
Primary Key | No |
Precision | |
Scale | |
Status | Active |
Description |
At most sites, a large volume of water was filtered through a plankton net with a mesh size of 200 micron. This concentrates particate matter such as plankton to which Vp bacteria can attach. As before, the number of copeis of the tl gene serves to give a direct measure of the density of Vp associated with particles in the water column. Units for values are Number of cells of Vp per 100 grams of water retained in the net tow. |
General Data Type | NUMBER |
Unit of Measure | Number of cells of Vp per 100 gm of water retained net tow. |
Case Restriction | |
Display Example | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Attribute Name | tdh+ Vibrio parahaemolyticus, net tow |
---|---|
Seq. Order | 19 |
Data Storage Type | NUMBER |
Max Length | |
Min Length | |
Required | No |
Primary Key | No |
Precision | |
Scale | |
Status | Active |
Description |
The number of copies of the virulence-assciated tdh gene detected in net tow samples. Units for values are Number of copies of tdh present per 100 grams of water retained in the net tow. |
General Data Type | NUMBER |
Unit of Measure | Number of copies of tdh per 100 gm of water retained net tow |
Case Restriction | |
Display Example | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Attribute Name | Total Vibrio parahemolyticus, oyster |
---|---|
Seq. Order | 20 |
Data Storage Type | NUMBER |
Max Length | |
Min Length | |
Required | No |
Primary Key | No |
Precision | |
Scale | |
Status | Active |
Description |
Oyster tissue is homogenized and analyzed for total V. parahaemolyticus by detection of the the tl gene by the "Most Probable Number (MPN)" method. Units for values are The MPN of Vp per gram of oyster tissue. |
General Data Type | NUMBER |
Unit of Measure | The MPN of Vp per gram of oyster tissue. |
Case Restriction | |
Display Example | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Attribute Name | tdh+ Vibrio parahaemolyticus, oyster |
---|---|
Seq. Order | 21 |
Data Storage Type | NUMBER |
Max Length | |
Min Length | |
Required | No |
Primary Key | No |
Precision | |
Scale | |
Status | Active |
Description |
The most probable number of copies of the virulence-associated tdh gene detected in oyster tissue. Units for values are The MPN of copies of tdh per gram of oyster tissue. |
General Data Type | NUMBER |
Unit of Measure | The MPN of copies of tdh per gram of oyster tissue. |
Case Restriction | |
Display Example | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Attribute Name | |
---|---|
Seq. Order | |
Data Storage Type | |
Max Length | |
Precision | |
Scale | |
Required | |
Primary Key | |
Status | |
Description | |
General Data Type | |
Case Restriction | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Min Length | |
Unit of Measure | |
Display Example | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Attribute Name | |
---|---|
Seq. Order | |
Data Storage Type | |
Max Length | |
Precision | |
Scale | |
Required | |
Primary Key | |
Status | |
Description | |
General Data Type | |
Case Restriction | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Min Length | |
Unit of Measure | |
Display Example | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Attribute Name | |
---|---|
Seq. Order | |
Data Storage Type | |
Max Length | |
Precision | |
Scale | |
Required | |
Primary Key | |
Status | |
Description | |
General Data Type | |
Case Restriction | |
Format Mask | |
Null Value | |
Null Value Meaning | |
Min Length | |
Unit of Measure | |
Display Example | |
Allowed Values | |
Default Value | |
Foreign Key Relations | |
Derivation | |
Validation Rules |
Support Roles
* » Support Role | |
---|---|
* » Date Effective From | |
Date Effective To | |
* » Contact | |
* Contact Instructions |
* » Support Role | |
---|---|
* » Date Effective From | |
Date Effective To | |
* » Contact | |
* Contact Instructions |
* » Support Role | |
---|---|
* » Date Effective From | |
Date Effective To | |
* » Contact | |
* Contact Instructions |
Extents
Currentness Reference |
---|
Extent Group 1
Extent Description |
---|
Extent Group 1 / Geographic Area
* » W° Bound | |
---|---|
* » E° Bound | |
* » N° Bound | |
* » S° Bound | |
* » Description |
Extent Group 1 / Vertical Extent
EPSG Code | |
---|---|
Vertical Minimum | |
Vertical Maximum |
Extent Group 1 / Time Frame
* » Time Frame Type | |
---|---|
* » Start | |
End | |
Alternate Start as of Info | |
Alternate End as of Info | |
Description |
Access Information
* » Security Class | |
---|---|
* Security Classification System |
|
Security Handling Description |
|
• Data Access Policy |
|
» Data Access Procedure |
|
• » Data Access Constraints |
|
• Data Use Constraints |
|
Metadata Access Constraints |
|
Metadata Use Constraints |
|
Distribution Information
Start Date | |
---|---|
End Date | |
» Download URL | |
Distributor | |
File Name | |
Description | |
File Date/Time | |
File Type | |
FGDC Content Type | |
File Size | |
Application Version | |
Compression | |
Review Status |
Start Date | |
---|---|
End Date | |
» Download URL | |
Distributor | |
File Name | |
Description | |
File Date/Time | |
File Type | |
FGDC Content Type | |
File Size | |
Application Version | |
Compression | |
Review Status |
Start Date | |
---|---|
End Date | |
» Download URL | |
Distributor | |
File Name | |
Description | |
File Date/Time | |
File Type | |
FGDC Content Type | |
File Size | |
Application Version | |
Compression | |
Review Status |
Activity Log
Activity Time | |
---|---|
Activity Type | |
Responsible Party | |
Description |
Activity Time | |
---|---|
Activity Type | |
Responsible Party | |
Description |
Activity Time | |
---|---|
Activity Type | |
Responsible Party | |
Description |
Issues
Issue Date | |
---|---|
Author | |
Issue |
Issue Date | |
---|---|
Author | |
Issue |
Issue Date | |
---|---|
Author | |
Issue |
FAQs
Date | |
---|---|
Author | |
Question | |
Answer |
Child Items
Rubric scores updated every 15m
Score | Type | Title |
---|---|---|
Related Items
Item Type | Relationship Type | Title |
---|---|---|
Catalog Details
Catalog Item ID | 36975 |
---|---|
Metadata Record Created By | Jeffrey W Cowen |
Metadata Record Created | 2017-02-28 13:01+0000 |
Metadata Record Last Modified By | SysAdmin InPortAdmin |
» Metadata Record Last Modified | 2022-08-09 17:11+0000 |
Metadata Record Published | 2018-02-27 |
Owner Org | NWFSC |
Metadata Publication Status | Published Externally |
Do Not Publish? | N |
Metadata Workflow State | Published / External |
Metadata Last Review Date | 2018-02-27 |
Metadata Review Frequency | 1 Year |
Metadata Next Review Date | 2019-02-27 |
Tags |
---|