St. John, USVI benthic habitat assessment and monitoring data (2001 - Present) using Rapid Habitat Assessment (RHA) survey methodology: 2011
National Centers for Coastal Ocean Science
Data Set
(DS)
| ID: 39577
| Published / External
Created: 2017-04-05
|
Last Modified: 2023-10-17
Project (PRJ) | ID: 37207
ID: 39577
Data Set (DS)
* Discovery• First Pass
» Metadata Rubric
Item Identification
* » Title | St. John, USVI benthic habitat assessment and monitoring data (2001 - Present) using Rapid Habitat Assessment (RHA) survey methodology: 2011 |
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Short Name | stj_rha_metadata_1211 |
* Status | In Work |
Creation Date | |
Revision Date | |
• Publication Date | 2011-12-19 |
* » Abstract |
This fish and benthic composition database is the result of a multifaceted effort described below. The intent of this work is five fold: 1) To spatially characterize and monitor the distribution, abundance, and size of both reef fishes and macro-invertebrates (conch, lobster, Diadema); 2) To relate this information to in-situ data collected on associated benthic composition parameters; 3) To use this information to establish the knowledge base necessary for enacting management decisions in a spatial setting; 4) To establish the efficacy of those management decisions; and 5) To work with the National Coral Reef Monitoring Program to develop data collection standards and easily implemented methodologies for transference to other agencies and to work toward standardizing data collection throughout the US states and territories. Toward this end, the Center for Coastal Monitoring and Assessment's Biogeography Branch (BB) has been conducting research in Puerto Rico and the US Virgin Islands since 2000 and 2001, respectively. It is critical, with recent changes in management at both locations (e.g. implementation of MPAs) as well as proposed changes (e.g. zoning to manage multiple human uses) that action is taken now to accurately describe and characterize the fish/macro-invertebrate populations in these areas. It is also important that BB work closely with the individuals responsible for recommending and implementing these management strategies. Recognizing this, BB has been collaborating with partners at the University of Puerto Rico, National Park Service, US Geological Survey and the Virgin Islands Department of Planning and Natural Resources. To quantify patterns of spatial distribution and make meaningful interpretations, we must first have knowledge of the underlying variables determining species distribution. The basis for this work therefore, is the nearshore benthic habitats maps (less than 100 ft depth) created by NOAA's Biogeography Program in 2001 and NOS' bathymetry models. Using ArcView GIS software, the digitized habitat maps are stratified to select sampling stations. Sites are randomly selected within these strata to ensure coverage of the entire study region and not just a particular reef or seagrass area. At each site, fish, macro-invertebrates, and benthic composition information is then quantified following standardized protocols. By relating the data collected in the field back to the habitat maps and bathymetric models, BB is able to model and map species level and community level information. These protocols are standardized throughout the US Caribbean to enable quantification and comparison of reef fish abundance and distribution trends between locations. Armed with the knowledge of where "hot spots" of species richness and diversity are likely to occur in the seascape, the BB is in a unique position to answer questions about the efficacy of marine zoning strategies (e.g. placement of no fishing, anchoring, or snorkeling locations), and what locations are most suitable for establishing MPAs. Knowledge of the current status of fish/macro-invertebrate communities coupled with longer term monitoring will enable evaluation of management efficacy, thus it is essential to future management actions. |
* Purpose |
1) To spatially characterize and monitor the distribution, abundance, and size of both reef fishes and macro-invertebrates (conch, lobster, Diadema); 2) To relate this information to in-situ data collected on associated benthic composition parameters; 3) To use this information to establish the knowledge base necessary for enacting management decisions in a spatial setting; 4) To establish the efficacy of those management decisions; and 5) To work with the National Coral Reef Monitoring Program to develop data collection standards and easily implemented methodologies for transference to other agencies and to work toward standardizing data collection throughout the US states and territories. |
Notes |
869 |
Other Citation Details | |
• Supplemental Information |
This work is being conducted in collaboration with the National Park Service, US Geological Survey, and the Virgin Islands Department of Planning and Natural Resources. |
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Keywords
Theme Keywords
Thesaurus | Keyword |
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ISO 19115 Topic Category | biota |
ISO 19115 Topic Category | environment |
ISO 19115 Topic Category | oceans |
CoRIS Discovery Thesaurus | Numeric Data Sets > Benthic |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Aquatic Habitat > Benthic Habitat |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Aquatic Habitat > Reef Habitat > Description |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Vegetation > Algae > Algal cover |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Vegetation > Algae > Calcareous macroalgae |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Vegetation > Algae > Coralline algae |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Vegetation > Algae > Crustose coralline algae |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Vegetation > Algae > Encrusting macroalgae |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Vegetation > Algae > Fleshy macroalgae |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Vegetation > Algae > Turf algae |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Zoology > Corals > Reef monitoring and assessment |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Zoology > Corals > Reef monitoring and assessment > Baseline studies |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Zoology > Corals > Reef monitoring and assessment > Benthos analysis |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Zoology > Corals > Reef monitoring and assessment > In situ biological |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Zoology > Corals > Reef monitoring and assessment > Rapid assessment studies |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Zoology > Sponges |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Zoology > Sponges > Boring |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Zoology > Sponges > Encrusting |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Zoology > Sponges > Erect |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology > BioDiversity |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology > Coral cover |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology > Habitats |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology > Hard coral cover |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology > Hard coral cover Live percentage |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology > Octocoral cover |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs > Coral Reef Ecology > Rugosity |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Marine Biology > Marine Invertebrates > Census > Population density |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Marine Biology > Marine Invertebrates > Macroinvertebrates |
NOS Data Explorer Topic Category | Environmental Monitoring |
None | Benthic Habitat Composition |
None | Coral Bleaching Visual Images |
None | Gorgonian Visual Images |
None | Macroalgae Visual Images |
None | Sponges Visual Images |
Temporal Keywords
Thesaurus | Keyword |
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* Spatial Keywords
Thesaurus | Keyword |
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CoRIS Place Thesaurus | COUNTRY/TERRITORY > United States of America > U. S. Virgin Islands > St. John > St. John (18N064W0011) |
CoRIS Place Thesaurus | OCEAN BASIN > Atlantic Ocean > Caribbean Sea > Virgin Islands > Virgin Islands > St. John (18N064W0011) |
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Physical Location
• » Organization | National Centers for Coastal Ocean Science |
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• » City | Silver Spring |
• » State/Province | MD |
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• » Location Description |
Data Set Information
* Data Set Scope Code | Data Set |
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• Data Set Type | |
• Maintenance Frequency | Annually |
Maintenance Note | |
» Data Presentation Form | |
• Entity Attribute Overview |
We supply percent cover composition of benthic communities. This information is collected across all nearshore habitat types. In addition, we provide photographs of many of the taxa. For specific information please see the data dictionary available on the database website. |
Entity Attribute Detail Citation |
NOAA/NOS/NCCOS/CCMA/Biogeography Branch |
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Distribution Liability |
These data were prepared by an agency of the United States Government. Neither the United States Government nor any agency thereof, nor any of their employees, make any warranty, expressed or implied, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed, or represents that its use would not infringe privately owned rights. Reference therein to any specific commercial product, process, or service by trade name, trademark, manufacturer, or otherwise does not necessarily constitute or imply its endorsement, recommendation, or favoring by the United States Government or any agency thereof. Any views and opinions expressed herein do not necessarily state or reflect those of the United States Government or any agency thereof. Although all data have been used by NOAA, no warranty, expressed or implied, is made by NOAA as to the accuracy of the data and/or related materials. The act of distribution shall not constitute any such warranty, and no responsibility is assumed by NOAA in the use of these data or related materials. |
Data Set Credit | This is a cooperative effort between NOAA's Biogeography Branch, the National Park Service, and the Virgin Islands Department of Planning and Natural Resources. |
Support Roles
* » Support Role | Data Steward |
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* » Date Effective From | 2011-12-19 |
Date Effective To | |
Position | NCCOS Scientific Data Coordinator |
Email Address | NCCOS.data@noaa.gov |
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* » Support Role | Distributor |
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* » Date Effective From | 2011-12-19 |
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Position | NCCOS Scientific Data Coordinator |
Email Address | NCCOS.data@noaa.gov |
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* » Support Role | Metadata Contact |
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* » Date Effective From | 2011-12-19 |
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Position | NCCOS Scientific Data Coordinator |
Email Address | NCCOS.data@noaa.gov |
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* » Support Role | Point of Contact |
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* » Date Effective From | 2011-12-19 |
Date Effective To | |
Position | NCCOS Scientific Data Coordinator |
Email Address | NCCOS.data@noaa.gov |
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* » Support Role | Principal Investigator |
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* » Date Effective From | 2011-12-19 |
Date Effective To | |
Person | Jeffrey, Chris |
Email Address | chris.jeffrey@noaa.gov |
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Extents
Currentness Reference | Ground Condition |
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Extent Group 1
Extent Description |
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Extent Group 1 / Geographic Area 1
* » W° Bound | -64.84 |
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* » E° Bound | -64.66 |
* » N° Bound | 18.38 |
* » S° Bound | 18.23 |
* » Description |
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* » Time Frame Type | Continuing |
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* » Start | 2001-07 |
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Spatial Information
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Access Information
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* » Security Class | Unclassified |
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• Data Access Policy | |
» Data Access Procedure | |
• » Data Access Constraints |
None |
• Data Use Constraints |
Please reference NOAA/NOS/NCCOS/CCMA/Biogeography Branch when utilizing these data in a report or peer reviewed publication. Additionally, knowledge of how this dataset has been of use and which organizations are utilizing it is of great benefit for ensuring this information continues to meet the needs of the management and research communities. Therefore, it is requested but not mandatory, that any user of this data supply this information to the Program Manager: Kimberly Roberson (email: Kimberly.roberson@noaa.gov). |
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Distribution Information
Start Date | |
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» Download URL | http://www8.nos.noaa.gov/biogeo_public/habitat_photos.aspx |
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File Type (Deprecated) | .jpg |
Distribution Format | JPEG |
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» Download URL | http://www8.nos.noaa.gov/bpdmWeb/queryMain.aspx |
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URL | http://www8.nos.noaa.gov/bpdmWeb/queryMain.aspx |
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URL | http://www8.nos.noaa.gov/biogeo_public/reef_photos.aspx |
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URL | http://ccma.nos.noaa.gov/ecosystems/coralreef/reef_fish/ |
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Activity Log
Activity Time | 2014-08-07 |
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Date that the source FGDC record was last modified. |
Activity Time | 2017-04-05 |
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Converted from Content Standard for Digital Geospatial Metadata (version FGDC-STD-001-1998) using 'fgdc_to_inport_xml.pl' script. Contact Tyler Christensen (NOS) for details. |
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Completeness Report |
These data consist of multiple fish community surveys across all nearshore marine habitats around St. John, US Virgin Islands. Sites were randomly selected and stratified across by habitat types using NOAA's benthic habitat maps of St. John, USVI. |
Conceptual Consistency |
Not applicable |
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Process Steps
Process Step Number | 1 |
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» Description |
There are two RHA data collection methods to be utilitzed at each RHA site: cylinder RHA and transect RHA. The modified habitat survey is utilized to characterize areas within and nearby the Virgin Islands Coral Reef National Monument (VICR) boundaries. The RHA survey has the advantage of reducing bottom time at greater depths (i.e., sites below 80 ft). Site selection begins by stratifying NOAA's nearshore benthic habitat maps into predetermined habitat strata and monument boundaries. ArcGIS is then employed to randomly select sites within the hardbottom strata inside and outside the VICR boundaries. Using a handheld GPS unit, the boat captain navigates to the previously selected sites. Once on site, the transect and RHA divers are deployed. Fish transect diver follows a random compass bearing and swims in a straight line, collecting data along the 25m x 4m transect (details above). The fish transect diver does not deviate from a straight line unless changes in depth make it dangerous to continue. In this case, the diver will maintain a safe depth while continuing to collect data in an area equal to a straight-line 25m x 4m (100m2) transect. The habitat diver collects data along the 25m x 4m belt transect in 5 rectangular segments, each measuring 5m long by 4m wide (same area as transect). Each segment should take a maximum of 4 minutes (4 min x 5 segments = 20 min), allowing the habitat diver to finish closely behind the fish transect diver - continuing to meet the physiological parameters of repeatedly diving at Mid Shelf Reef and deep Coral Bay sites. If data are collected in less than 4 minutes, then the habitat diver moves to the next segment. Data are recorded in Q1 - Q5, on the flipside of the cylinder RHA data sheet. Q1 correlates with the first segment along the transect, Q2 the second segment, etc. The following information is recorded during the RHA transect survey: 1) Dive logistics - name of the fish transect and habitat divers 2) Dive logistics - station ID, date, and the start time of the survey. 3) Habitat structure - the dive site is categorized based on the hierarchical classifaction used to produce the benthic habitat maps. 4) Depth - minimum and maximum depth of each unit, to provide an estimate of bottom slope. 5) Rugosity (low, medium, or high) - based on the height of the tallest hardbottom structure. 6) Abiotic footprint - an estimate of % cover (within 5%) of hardbottom, sand, and rubble in each unit. The sum of % cover in each unit for the abiotic footprint must total 100%. 7) Biotic footprint - an estimate of the % cover (within 1%) of live coral, gorgonians, sponges, macro algae, and uncolonized substrate in each 5m x 4m unit. The sum of % cover (including uncolonized substrate) in each unit in the biotic footprint must total 100%. 8) Acropora presence - mark if A. palmata or A. cervicornis are seen along the transect or at the site. 9) Photography - the point count or habitat diver will take at least two photos in different directions at each site to maintain an anecdotal and permanent visual description of the sites that were sampled. Proper care and maintenance is necessary for all camera and camera housings. It is important to maintain the cameras and housings before, after and in between dives. Although the 1m-square-quadrat remained the basic method of choice for habitat data collection, overtime, changes in data collection methods were made for some habitat variables and several additional variables were added. These changes were deemed necessary to capture more precise information and as many variables as possible to explain better the observed variability in reef fish assemblage metrics. Detailed information on all changes to the protocols for collecting habitat data in St. John can be found at: http://ccma.nos.noaa.gov/ecosystems/coralreef/fish_protocol.aspx Process Date: 200107 - Present |
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Catalog Details
Catalog Item ID | 39577 |
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Metadata Record Created By | Tyler Christensen |
Metadata Record Created | 2017-04-05 12:53+0000 |
Metadata Record Last Modified By | SysAdmin InPortAdmin |
» Metadata Record Last Modified | 2023-10-17 16:12+0000 |
Metadata Record Published | 2017-04-17 |
Owner Org | NCCOS |
Metadata Publication Status | Published Externally |
Do Not Publish? | N |
Metadata Workflow State | Published / External |
Metadata Last Review Date | 2017-04-17 |
Metadata Review Frequency | 1 Year |
Metadata Next Review Date | 2018-04-17 |
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