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NCCOS Metadata Library > CCMA > COAST > NSandT > National Status and Trends: Contaminant body bu... >

NPRB1019_Fish_Histopath2

Entity (ENT)  |  National Centers for Coastal Ocean Science (NCCOS)
GUID: gov.noaa.nmfs.inport:40991  |  Updated: August 9, 2022  |  Published / External 
Summary
Item Identification
Data Attributes
Catalog Details

Summary

Abstract

tab in NPRB-1019_Data Excel spreadsheet; represents fish sampling data | Description Source: Author

Entity Information

Data Attribute / Type Description
Collection Date
NUMBER 		Collection Date | Description Source: Author
Site
VARCHAR 		Sampling site | Description Source: Author
Site Code
VARCHAR 		Unique site Code | Description Source: Author
LatDeg
NUMBER 		Latitude of a sampling site | Description Source: Author
LonDeg
NUMBER 		Longitude of sampling site | Description Source: Author
Species
VARCHAR 		Species of fish | Description Source: Author
Sex
VARCHAR 		Sex of a specie | Description Source: Author
Number of fish analyzed
Unknown 		Number of fish analyzed | Description Source: Author
Fish Length mm
NUMBER 		Fish Length mm | Description Source: Author
Weight in Grams
NUMBER 		Weight in Grams | Description Source: Author
Time Necropsis
NUMBER 		Time Necropsis | Description Source: Author
Gross Lesions
VARCHAR 		abnormalities noted by visual examination at gross necropsy in the external or internal appearance | Description Source: Author
Tissue type
VARCHAR 		Fish tissue analyzed | Description Source: Author
Parameter
VARCHAR 		Histopathology parameter (parasite, disease) measured | Description Source: Author
Data
VARCHAR 		Presence or non-occurrence of histopathology parameters | Description Source: Author

Child Items

No Child Items for this record.

Contact Information

No contact information is available for this record.

Please contact the owner organization (NCCOS) for inquiries on this record.

Item Identification

Title: NPRB1019_Fish_Histopath2
Short Name: NPRB1019_Fish_Histopath2
Status: Completed
Abstract:

tab in NPRB-1019_Data Excel spreadsheet; represents fish sampling data | Description Source: Author
Notes:

Converted from FGDC using 'fgdc_to_inport_xml_entity.pl' script.

Data Attributes

Attribute Summary

Rubric Score Primary Key? Name Type Description
100
 Collection Date NUMBER Collection Date | Description Source: Author
100
 Site VARCHAR Sampling site | Description Source: Author
100
 Site Code VARCHAR Unique site Code | Description Source: Author
100
 LatDeg NUMBER Latitude of a sampling site | Description Source: Author
100
 LonDeg NUMBER Longitude of sampling site | Description Source: Author
100
 Species VARCHAR Species of fish | Description Source: Author
100
 Sex VARCHAR Sex of a specie | Description Source: Author
100
 Number of fish analyzed Unknown Number of fish analyzed | Description Source: Author
100
 Fish Length mm NUMBER Fish Length mm | Description Source: Author
100
 Weight in Grams NUMBER Weight in Grams | Description Source: Author
100
 Time Necropsis NUMBER Time Necropsis | Description Source: Author
100
 Gross Lesions VARCHAR abnormalities noted by visual examination at gross necropsy in the external or internal appearance | Description Source: Author
100
 Tissue type VARCHAR Fish tissue analyzed | Description Source: Author
100
 Parameter VARCHAR Histopathology parameter (parasite, disease) measured | Description Source: Author
100
 Data VARCHAR Presence or non-occurrence of histopathology parameters | Description Source: Author

Attribute Details

Collection Date

CC ID: 528931
Seq. Order: 1
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

Collection Date | Description Source: Author
Allowed Values: 7/19/10 - 7/21/10

Site

CC ID: 528932
Seq. Order: 2
Data Storage Type: VARCHAR
Required: No
Primary Key: No
Status: Active
Description:

Sampling site | Description Source: Author
Allowed Values: Nanwalek: Nanwalek | Port Graham: Port Graham | Seldovia: Seldovia |

Site Code

CC ID: 528933
Seq. Order: 3
Data Storage Type: VARCHAR
Required: No
Primary Key: No
Status: Active
Description:

Unique site Code | Description Source: Author
Allowed Values: NHA: Nanwalek | PHGA: Port Graham | SHA: Seldovia |

LatDeg

CC ID: 528934
Seq. Order: 4
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

Latitude of a sampling site | Description Source: Author
Allowed Values: 59.351492 - 59.4532

LonDeg

CC ID: 528935
Seq. Order: 5
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

Longitude of sampling site | Description Source: Author
Allowed Values: -151.92089 - -151.5209

Species

CC ID: 528936
Seq. Order: 6
Data Storage Type: VARCHAR
Required: No
Primary Key: No
Status: Active
Description:

Species of fish | Description Source: Author
Allowed Values: sockeye: sockeye | chum: chum |

Sex

CC ID: 528937
Seq. Order: 7
Data Storage Type: VARCHAR
Required: No
Primary Key: No
Status: Active
Description:

Sex of a specie | Description Source: Author
Allowed Values: male: male | female: female |

Number of fish analyzed

CC ID: 528938
Seq. Order: 8
Data Storage Type: Unknown
Required: No
Primary Key: No
Status: Active
Description:

Number of fish analyzed | Description Source: Author
Allowed Values: Comments of a sampler

Fish Length mm

CC ID: 528939
Seq. Order: 9
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

Fish Length mm | Description Source: Author
Allowed Values: 495 - 695

Weight in Grams

CC ID: 528940
Seq. Order: 10
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

Weight in Grams | Description Source: Author
Allowed Values: 1320 - 4510

Time Necropsis

CC ID: 528941
Seq. Order: 11
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

Time Necropsis | Description Source: Author
Allowed Values: 12:16 AM - 11:45 PM

Gross Lesions

CC ID: 528942
Seq. Order: 12
Data Storage Type: VARCHAR
Required: No
Primary Key: No
Status: Active
Description:

abnormalities noted by visual examination at gross necropsy in the external or internal appearance | Description Source: Author
Allowed Values: no adipose fin clip: Indication of wild fish | paler flesh, small fish: relatively smaller flesh that was pale pink in color | num. peritoneal: numerous peritoneal nematodes | many perit. nematodes: many nematode worms |

Tissue type

CC ID: 528943
Seq. Order: 13
Data Storage Type: VARCHAR
Required: No
Primary Key: No
Status: Active
Description:

Fish tissue analyzed | Description Source: Author
Allowed Values: Gill: Fish gill | Kidney: Fish kidney | Liver: Fish liver |

Parameter

CC ID: 528944
Seq. Order: 14
Data Storage Type: VARCHAR
Required: No
Primary Key: No
Status: Active
Description:

Histopathology parameter (parasite, disease) measured | Description Source: Author
Allowed Values: Gill Loma salmonis (microsporidan): Gill Loma salmonis (microsporidan) | Gill Microaneurysms: Gill Microaneurysms | Gill monogenetic trematodes: Gill monogenetic trematodes | Gill no significant lesions: no significant lesions in the gill | Kidney tubular Myxosporidans: Kidney tubular Myxosporidans | Kidney no significant lesions: No significant lesions in the kidney | Liver no significant lesions: No significant lesions in the liver | Liver Peritoneal Nematodes: Liver Peritoneal Nematodes |

Data

CC ID: 528945
Seq. Order: 15
Data Storage Type: VARCHAR
Required: No
Primary Key: No
Status: Active
Description:

Presence or non-occurrence of histopathology parameters | Description Source: Author
Allowed Values: 1: Parameter observed positively | 0: Parameter observed |

Catalog Details

Catalog Item ID: 40991
GUID: gov.noaa.nmfs.inport:40991
Metadata Record Created By: Tyler Christensen
Metadata Record Created: 2017-04-06 10:31+0000
Metadata Record Last Modified By: SysAdmin InPortAdmin
Metadata Record Last Modified: 2022-08-09 17:11+0000
Metadata Record Published: 2017-04-07
Owner Org: NCCOS
Metadata Publication Status: Published Externally
Do Not Publish?: N
Metadata Last Review Date: 2017-04-07
Metadata Review Frequency: 1 Year
Metadata Next Review Date: 2018-04-07