41240
Dataset Parameters for Benthic Surveillance Pathology data
Dataset Parameters for Benthic Surveillance Pathology data
Entity
Published / External
39260
National Status and Trends, Benthic Surveillance Project Pathology, 1984-1992, National Centers for Coastal Ocean Science
Data Set
Completed
The PATHOLOGY data file reports information regarding study parameters. | Description Source: National Status and Trends, Benthic Surveillance Project
Converted from FGDC using 'fgdc_to_inport_xml_entity.pl' script.
1
NST_SITE
VARCHAR
No
No
Active
NSandT site identifier (5 letter code site identifier). | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
2
YEAR
VARCHAR
No
No
Active
Year the site was sampled. | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
3
SPEC_CD1
VARCHAR
No
No
Active
Species abbreviation (Usually a 2 or 3 letter code which identifies the common species name). | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
4
SPEC_NO
VARCHAR
No
No
Active
Laboratory specimen number | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
5
SEX
VARCHAR
No
No
Active
Sex of the specimen | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
6
AGEYEARS
VARCHAR
No
No
Active
Age of the specimen | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
7
LENGTH
VARCHAR
No
No
Active
Length of the specimen (millimeters) | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
8
WEIGHT
VARCHAR
No
No
Active
Weight of the specimen (grams) | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
9
EPNEO
VARCHAR
No
No
Active
Liver epithelial neoplasms (Incidence of epithelial lesions). | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
10
MESNEO
VARCHAR
No
No
Active
Liver mesenchymal neoplasms (Incidence of mesenchymal lesions). | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
11
ALLNEO
VARCHAR
No
No
Active
All types of liver neoplasms. It includes both epithelial and mesenchymal: Epithelial (liver cell adenoma, cholangioma, hepatocellular, carcinoma, cholangiocellular, carcinoma, mixed hepatobiliary carcinoma, biliary cystadenoma, biliary cystadenocarcinoma, pancreatic acinar cell adenoma, pancreatic ductal adenoma pancreatic cystadenoma, pancreatic acinar cell carcinoma, pancreatic adenocarcinoma); Mesenchymal (hemangioma, hemangioendothelioma, hemagiontothelial sarcoma, fibroma, fibrosarcoma, hemangiopericytoma, neurilemmona, neurofibroma, neurofibrosarcoma) | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
12
HYDVAC
VARCHAR
No
No
Active
Hydropic vacuolation: Hepatocellular or biliary hydropic vacuolation (syn RAM cell areas, atypical cellular vacuolation) | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
13
KIDNEO
VARCHAR
No
No
Active
Kidney neoplasms (Incidence of kidney neoplasms). | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
14
GPAENEP
VARCHAR
No
No
Active
Gross epidermal papilloma/abgioepithelial nodule (Incidence of gross epidermal papilloma/abgioepithelial nodule). | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
15
FINEROS
VARCHAR
No
No
Active
Fin erosion (Incidence of fin erosion and associated lesions, including loss of fin, hemorrhagic fin tissue, fused rays, bent fin, exposed fin rays, fin ray blunting or retraction, and reflection of fin tissue back onto body surface). | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
16
ALLFCA
VARCHAR
No
No
Active
All foci of cellular alteration. Putative preneoplastic focal lesions (foci of cellular alteration, including clear cell focus, eosinophilic focus, basophilic cell focus, and hyperplastic hepatocellular regeneration) | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
17
LIVPROL
VARCHAR
No
No
Active
Liver, non-neoplastic proliferative lesions (includes biliary hyperplasia, hep. regeneration, oval cell proliferation, cholangiofibrosis, increased mitotic index) | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
18
SDN
VARCHAR
No
No
Active
Specific degeneration/necrosis (includes hep. nuclear pleomorphism, hepatic megalocytosis) | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
19
SPONGHEP
VARCHAR
No
No
Active
Spongiosis hepatis or cystic degeneration of hepatocellular parenchyma | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
20
NECROSIS
VARCHAR
No
No
Active
Necrosis (NOT same as SDN), primarily includes hep. coagulative necrosis, biliary epithelial cell necrosis, hep. and biliary pyknosis, karyorrhexis) | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
21
LIVER
VARCHAR
No
No
Active
Examined liver: This just indicates whether or not the liver was examined. | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
22
NEPHPROL
VARCHAR
No
No
Active
Kidney, proliferative lesions (includes multiple lesions including tubular regeneration, tubular hyperplasia, glomerular hypercellularity, proliferation of parietal and visceral layers of Bowman's capsule, other rarely encountered lesions) | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
23
NEPHNEC
VARCHAR
No
No
Active
Kidney necrosis (includes a long list of multiple lesions, including mesangiolysis, tubular necrosis, hydropic degeneration of tubular epithelium, hyalinization of tubular epithelium, others) | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
24
NEPHSCLR
VARCHAR
No
No
Active
Kidney, sclerotic/fibrotic conditions (includes mesangiosclerosis, hypermembranous tubules, hypermembraneous glomerular tuft, calcification, glomerulosclerosis, peritubular fibrosis, and fibrosis/fibroplasia of the interstitium) | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
25
KIDNEY
VARCHAR
No
No
Active
Examined kidney: This just indicates whether or not the kidney was examined. | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
26
REV_PATH
VARCHAR
No
No
Active
Last Revision of Taxonomy/Pathology File | Description Source: National Status and Trends, Benthic Surveillance Project
Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects
gov.noaa.nmfs.inport:41240
Tyler Christensen
2017-04-06T10:33:24
SysAdmin InPortAdmin
2022-08-09T17:11:23
2017-04-17
National Centers for Coastal Ocean Science
NCCOS
1002
Public
No
2017-04-17
1 Year
2018-04-17