41240 Dataset Parameters for Benthic Surveillance Pathology data Entity Published / External 39260 National Status and Trends, Benthic Surveillance Project Pathology, 1984-1992, National Centers for Coastal Ocean Science Data Set Completed The PATHOLOGY data file reports information regarding study parameters. | Description Source: National Status and Trends, Benthic Surveillance Project Converted from FGDC using 'fgdc_to_inport_xml_entity.pl' script. 1 NST_SITE VARCHAR No No Active NSandT site identifier (5 letter code site identifier). | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 2 YEAR VARCHAR No No Active Year the site was sampled. | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 3 SPEC_CD1 VARCHAR No No Active Species abbreviation (Usually a 2 or 3 letter code which identifies the common species name). | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 4 SPEC_NO VARCHAR No No Active Laboratory specimen number | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 5 SEX VARCHAR No No Active Sex of the specimen | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 6 AGEYEARS VARCHAR No No Active Age of the specimen | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 7 LENGTH VARCHAR No No Active Length of the specimen (millimeters) | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 8 WEIGHT VARCHAR No No Active Weight of the specimen (grams) | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 9 EPNEO VARCHAR No No Active Liver epithelial neoplasms (Incidence of epithelial lesions). | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 10 MESNEO VARCHAR No No Active Liver mesenchymal neoplasms (Incidence of mesenchymal lesions). | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 11 ALLNEO VARCHAR No No Active All types of liver neoplasms. It includes both epithelial and mesenchymal: Epithelial (liver cell adenoma, cholangioma, hepatocellular, carcinoma, cholangiocellular, carcinoma, mixed hepatobiliary carcinoma, biliary cystadenoma, biliary cystadenocarcinoma, pancreatic acinar cell adenoma, pancreatic ductal adenoma pancreatic cystadenoma, pancreatic acinar cell carcinoma, pancreatic adenocarcinoma); Mesenchymal (hemangioma, hemangioendothelioma, hemagiontothelial sarcoma, fibroma, fibrosarcoma, hemangiopericytoma, neurilemmona, neurofibroma, neurofibrosarcoma) | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 12 HYDVAC VARCHAR No No Active Hydropic vacuolation: Hepatocellular or biliary hydropic vacuolation (syn RAM cell areas, atypical cellular vacuolation) | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 13 KIDNEO VARCHAR No No Active Kidney neoplasms (Incidence of kidney neoplasms). | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 14 GPAENEP VARCHAR No No Active Gross epidermal papilloma/abgioepithelial nodule (Incidence of gross epidermal papilloma/abgioepithelial nodule). | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 15 FINEROS VARCHAR No No Active Fin erosion (Incidence of fin erosion and associated lesions, including loss of fin, hemorrhagic fin tissue, fused rays, bent fin, exposed fin rays, fin ray blunting or retraction, and reflection of fin tissue back onto body surface). | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 16 ALLFCA VARCHAR No No Active All foci of cellular alteration. Putative preneoplastic focal lesions (foci of cellular alteration, including clear cell focus, eosinophilic focus, basophilic cell focus, and hyperplastic hepatocellular regeneration) | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 17 LIVPROL VARCHAR No No Active Liver, non-neoplastic proliferative lesions (includes biliary hyperplasia, hep. regeneration, oval cell proliferation, cholangiofibrosis, increased mitotic index) | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 18 SDN VARCHAR No No Active Specific degeneration/necrosis (includes hep. nuclear pleomorphism, hepatic megalocytosis) | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 19 SPONGHEP VARCHAR No No Active Spongiosis hepatis or cystic degeneration of hepatocellular parenchyma | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 20 NECROSIS VARCHAR No No Active Necrosis (NOT same as SDN), primarily includes hep. coagulative necrosis, biliary epithelial cell necrosis, hep. and biliary pyknosis, karyorrhexis) | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 21 LIVER VARCHAR No No Active Examined liver: This just indicates whether or not the liver was examined. | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 22 NEPHPROL VARCHAR No No Active Kidney, proliferative lesions (includes multiple lesions including tubular regeneration, tubular hyperplasia, glomerular hypercellularity, proliferation of parietal and visceral layers of Bowman's capsule, other rarely encountered lesions) | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 23 NEPHNEC VARCHAR No No Active Kidney necrosis (includes a long list of multiple lesions, including mesangiolysis, tubular necrosis, hydropic degeneration of tubular epithelium, hyalinization of tubular epithelium, others) | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 24 NEPHSCLR VARCHAR No No Active Kidney, sclerotic/fibrotic conditions (includes mesangiosclerosis, hypermembranous tubules, hypermembraneous glomerular tuft, calcification, glomerulosclerosis, peritubular fibrosis, and fibrosis/fibroplasia of the interstitium) | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 25 KIDNEY VARCHAR No No Active Examined kidney: This just indicates whether or not the kidney was examined. | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects 26 REV_PATH VARCHAR No No Active Last Revision of Taxonomy/Pathology File | Description Source: National Status and Trends, Benthic Surveillance Project Dataset Parameters for Benthic Surveillance Pathology: National Status and Trends, Benthic Surveillance Projects gov.noaa.nmfs.inport:41240 Tyler Christensen 2017-04-06T10:33:24 SysAdmin InPortAdmin 2022-08-09T17:11:23 2017-04-17 National Centers for Coastal Ocean Science NCCOS 1002 Public No 2017-04-17 1 Year 2018-04-17