Diel seawater carbonate chemistry observations from a suite of instrumentation deployed at coral reef sites in Batangas, Philippines from May 21-31, 2015
Pacific Islands Fisheries Science Center
Data Set
(DS)
| ID: 45954
| Published / External
Created: 2017-05-02
|
Last Modified: 2024-10-03
Project (PRJ) | ID: 45935
ID: 45954
Data Set (DS)
* Discovery• First Pass
» Metadata Rubric
Item Identification
* » Title | Diel seawater carbonate chemistry observations from a suite of instrumentation deployed at coral reef sites in Batangas, Philippines from May 21-31, 2015 |
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Short Name | Philippines: diel surveys |
* Status | Completed |
Creation Date | |
Revision Date | |
• Publication Date | 2017 |
* » Abstract |
The data provided in this data set are from diel surveys conducted by the NOAA Pacific Islands Fisheries Science Center (PIFSC), Ecosystem Sciences Division (ESD)---formerly the Coral Reef Ecosystem Division---in the Philippines from May 21-31, 2015. The ocean acidification diel suite is an autonomous instrument package that measures diel variability in coral reef seawater carbonate chemistry. These diel suites were deployed on hard-bottom shallow-water (< 15 m) habitats at fixed climate survey sites located within coral reef ecosystems. The diel suites were deployed on the reef for at least 24 hours to measure in-situ salinity, temperature, pressure, pH, current direction and magnitude, and dissolved oxygen. Seawater samples were also collected for laboratory analyses of dissolved inorganic carbon (DIC) and total alkalinity (TA). Components of the carbonate system--including pH, pCO2 (partial pressure of carbon dioxide), and aragonite saturation state--are calculated from DIC, TA, temperature, salinity and pressure. Each diel suite consisted of: 1 SBE-19plus CTD sensor, 1 Nortek Acoustic Doppler Current Profiler (ADCP), 1 Satlantic SeaFET Ocean pH sensor, 1 SBE 43 dissolved oxygen sensor co-located with the CTD, and up to 9 Programmable Underwater Collectors (PUCs), each of which collected 1 water sample at 4-hour intervals. Instruments deployed, samples collected, and sample intervals are recorded in the summary file in the data package. |
* Purpose |
ESD's manual seawater sampling and other field monitoring efforts are limited to daylight hour operations. As a result, these data sets do not capture full 24-hour variability in coral reef physical and chemical environments. The ocean acidification diel suite was developed to increase the temporal resolution and coverage of oceanographic and carbonate chemistry measurements and contextualize daytime sampling within the full diel cycle. |
Notes | |
Other Citation Details | |
• Supplemental Information |
The Ecosystem Sciences Division (ESD) at NOAA Fisheries is conducting in-situ climate monitoring across the U.S. Pacific Islands Region. Climate monitoring provides a comprehensive view of climate change impacts on coral reef ecosystems and helps identify areas of resilience and vulnerability. The key indicators used to identify and monitor climate-driven trends include 1) thermal stress caused by changes in sea temperature, 2) ocean acidification resulting from changes in carbonate chemistry, and 3) ecological impacts by collecting data on coral growth rates and community structure to understand the impacts of thermal stress and ocean acidification on the ecosystem. This particular dataset for the Philippines is part of a 3-year project ("Climate, Biodiversity and Fisheries in the Coral Triangle: Embracing the E in Ecosystem Approaches to Fisheries Management") implemented by ESD. This project was funded by NOAA's Coral Reef Conservation Program (CRCP) and the U.S. Agency for International Development (USAID) Regional Development Mission Asia (RDMA) as part of the U.S. Coral Triangle Initiative, with additional support from the Coral Triangle Support Partnership and USAID Philippines. The goal of the project was to build on ESD's expertise to provide tools and information about climate change, ocean acidification, and their impacts on biodiversity and fisheries that could inform and be incorporated into an Ecosystem Approach to Fisheries Management (EAFM) for the Philippines. ESD worked with local governments, communities, and NGOs to build science capacity by establishing robust observing capabilities and providing hands-on training to initiate collection of climate science information for the Verde Island Passage in the Philippines that can be used toward adaptive EAFM. ESD traveled to the Verde Island Passage region of the Philippines in 2012 to deploy moored oceanographic (subsurface temperature recorders [STRs]) and ecological (calcification accretion units [CAUs] and autonomous reef monitoring structures [ARMS]) instrumentation, to collect surface and bottom water samples, and to conduct benthic photo-quadrat surveys, which included the collection of benthic images; in 2013 to collect additional water samples; and again in 2015 to recover the instrumentation and to collect another round of water samples and benthic images and to conduct diel surveys. All activities were conducted by SCUBA divers at five locations in the municipalities of Mabini and Tingloy, including Batong Buhay, Koala Reserve Area, Arthur's Reef, Twin Rocks, and Batalang Bato. At each of the five locations, a shallow and deep survey site was established for a total of 10 survey sites. |
DOI (Digital Object Identifier) | |
DOI Registration Authority | |
DOI Issue Date |
Keywords
Theme Keywords
Thesaurus | Keyword |
---|---|
ISO 19115 Topic Category | oceans |
CoRIS Discovery Thesaurus | Numeric Data Sets > Oceanography |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Aquatic Habitat > Reef Habitat |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > Baseline studies |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > In Situ Chemical |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Zoology > Corals > Reef Monitoring and Assessment > In Situ Physical |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Coastal Processes > Coral Reefs |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Ocean Chemistry > Alkalinity |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Ocean Chemistry > Carbon Dioxide > Partial Pressure |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Ocean Chemistry > Carbonate Chemistry |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Ocean Chemistry > Chemistry Monitoring and Assessment |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Ocean Chemistry > Climate Change |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Ocean Chemistry > Dissolution |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Ocean Chemistry > Dissolved Gases |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Ocean Chemistry > Dissolved Inorganic Carbon |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Ocean Chemistry > Ocean Acidification |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Ocean Chemistry > Oxygen |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Ocean Chemistry > pH |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Ocean Chemistry > Saturation State |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Ocean Circulation |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Ocean Circulation > Water Current Direction |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Ocean Circulation > Water Velocity |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Ocean Temperature > Water Temperature |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Ocean Temperature > Water Temperature > Bottom |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Salinity/Density > Conductivity |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Salinity/Density > Density |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Salinity/Density > Salinity |
CRCP Project | 483 |
CRCP Project | Climate, Biodiversity and Fisheries in the Coral Triangle: Embracing the E in Ecosystem Approaches to Fisheries Management |
NODC DATA TYPES THESAURUS | ARAGONITE SATURATION STATE |
NODC DATA TYPES THESAURUS | CONDUCTIVITY |
NODC DATA TYPES THESAURUS | CURRENT METER - DIRECTION |
NODC DATA TYPES THESAURUS | CURRENT METER - SPEED |
NODC DATA TYPES THESAURUS | DEPTH - SENSOR |
NODC DATA TYPES THESAURUS | DISSOLVED INORGANIC CARBON (DIC) |
NODC DATA TYPES THESAURUS | DISSOLVED OXYGEN |
NODC DATA TYPES THESAURUS | HYDROSTATIC PRESSURE |
NODC DATA TYPES THESAURUS | partial pressure of carbon dioxide - water |
NODC DATA TYPES THESAURUS | pH |
NODC DATA TYPES THESAURUS | SALINITY |
NODC DATA TYPES THESAURUS | SIGMA-T |
NODC DATA TYPES THESAURUS | total alkalinity |
NODC DATA TYPES THESAURUS | WATER TEMPERATURE |
NODC INSTRUMENT TYPES THESAURUS | ADCP |
NODC INSTRUMENT TYPES THESAURUS | Coulometer for DIC measurement |
NODC INSTRUMENT TYPES THESAURUS | CTD - moored CTD |
NODC INSTRUMENT TYPES THESAURUS | oxygen meter |
NODC INSTRUMENT TYPES THESAURUS | pH sensors |
NODC INSTRUMENT TYPES THESAURUS | titrator |
NODC OBSERVATION TYPES THESAURUS | continuous |
NODC OBSERVATION TYPES THESAURUS | current measurements |
NODC OBSERVATION TYPES THESAURUS | in situ |
NODC OBSERVATION TYPES THESAURUS | laboratory analyses |
NODC OBSERVATION TYPES THESAURUS | physical |
NODC OBSERVATION TYPES THESAURUS | time series profile |
NODC OBSERVATION TYPES THESAURUS | water chemistry |
NODC PROJECT NAMES THESAURUS | Coral Reef Conservation Program |
NODC PROJECT NAMES THESAURUS | CORAL REEF STUDIES |
NODC PROJECT NAMES THESAURUS | Coral Triangle Initiative |
NODC SUBMITTING INSTITUTION NAMES THESAURUS | US DOC; NOAA; NMFS; Pacific Islands Fisheries Science Center; Ecosystem Sciences Division |
None | Acoustic Doppler Current Profiler |
None | ADCP |
None | conductivity temperature depth |
None | Coral Reef Ecosystem Division |
None | Coral Reef Ecosystem Program |
None | Coral Triangle Initiative |
None | CRED |
None | CREP |
None | CTD |
None | Ecosystem Sciences Division |
None | ESD |
None | Ocean pH |
None | Pacific Islands Fisheries Science Center |
None | PIFSC |
None | Programmable Underwater Collector |
None | PUC |
None | United States Agency for International Development |
None | USAID |
None | water samples |
Temporal Keywords
Thesaurus | Keyword |
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None | diel |
* Spatial Keywords
Thesaurus | Keyword |
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CoRIS Place Thesaurus | COUNTRY/TERRITORY > Philippines > Batangas > Mabini (13N120E0032) |
CoRIS Place Thesaurus | COUNTRY/TERRITORY > Philippines > Batangas > Tingloy (13N120E0009) |
CoRIS Place Thesaurus | COUNTRY/TERRITORY > Philippines > Batangas > Twin Rocks Sanctuary (13N120E0005) |
CoRIS Place Thesaurus | OCEAN BASIN > Pacific Ocean > South China Sea > Balayan Bay > Mabini (13N120E0032) |
CoRIS Place Thesaurus | OCEAN BASIN > Pacific Ocean > South China Sea > Balayan Bay > Twin Rocks Sanctuary (13N120E0005) |
CoRIS Place Thesaurus | OCEAN BASIN > Pacific Ocean > South China Sea > Maricaban Island > Tingloy (13N120E0009) |
NODC SEA AREA NAMES THESAURUS | NW Pacific (limit-180) |
None | Batalang Bato |
None | Batong Buhay |
None | Philippines |
None | Twin Rocks |
None | Verde Island Passage |
Stratum Keywords
Thesaurus | Keyword |
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Instrument Keywords
Thesaurus | Keyword |
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Platform Keywords
Thesaurus | Keyword |
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Physical Location
• » Organization | Pacific Islands Fisheries Science Center |
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• » City | Honolulu |
• » State/Province | HI |
• Country | USA |
• » Location Description |
Data Set Information
* Data Set Scope Code | Data Set |
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• Data Set Type | CSV Files |
• Maintenance Frequency | None Planned |
Maintenance Note |
CSV files were updated with new columns in 2021 in order to standardize table structure across other diel suite data sets. |
» Data Presentation Form | Table (digital) |
• Entity Attribute Overview |
CTD data include conductivity, temperature, and pressure observations with calculated depth, salinity, and density. Dissolved oxygen is included. Water samples are analyzed for dissolved inorganic carbon (DIC) and total alkalinity (TA). pH, partial pressure of carbon dioxide, and aragonite saturation state are mathematically derived from TA and DIC values using temperature, salinity, and pressure data from the CTD. pH data are the mean of a burst of 30 measurements collected every 5 minutes. Current magnitude (meters/second) and direction (degrees) data are binned into 1-m height bins represented by the height of each bin above the sensor on the seafloor. |
Entity Attribute Detail Citation | |
Entity Attribute Detail URL | |
Distribution Liability |
While every effort has been made to ensure that these data are accurate and reliable within the limits of the current state of the art, NOAA cannot assume liability for any damages caused by errors or omissions in the data, nor as a result of the failure of the data to function on a particular system. NOAA makes no warranty, expressed or implied, nor does the fact of distribution constitute such a warranty. |
Data Set Credit | PIFSC Ecosystem Sciences Division and funded by the NOAA Coral Reef Conservation Program and the United States Agency for International Development |
Support Roles
* » Support Role | Data Set Credit |
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* » Date Effective From | 2015 |
Date Effective To | |
Organization | NOAA Coral Reef Conservation Program (CRCP) |
Address |
1305 East West Highway 10th Floor Silver Spring, MD 20910-3281 |
Email Address | |
Phone | (301) 713-3155 |
Fax | |
Mobile | |
URL | https://coralreef.noaa.gov |
Business Hours | |
Contact Instructions |
* » Support Role | Data Steward |
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* » Date Effective From | 2018 |
Date Effective To | |
Person | Barkley, Hannah C |
Address |
1845 Wasp Blvd. Honolulu, HI 96818 USA |
Email Address | hannah.barkley@noaa.gov |
Phone | |
Fax | |
Mobile | |
URL | |
Business Hours | |
Contact Instructions |
* » Support Role | Distributor |
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* » Date Effective From | 2019 |
Date Effective To | |
Organization | NOAA National Centers for Environmental Information (NCEI) |
Email Address | ncei.info@noaa.gov |
Phone | |
Fax | |
Mobile | |
URL | https://www.ncei.noaa.gov/contact |
Business Hours | |
Contact Instructions |
* » Support Role | Metadata Contact |
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* » Date Effective From | 2021 |
Date Effective To | |
Person | Luers, Lori H |
Address |
1845 Wasp Blvd. Honolulu, HI 96818 USA |
Email Address | lori.luers@noaa.gov |
Phone | |
Fax | |
Mobile | |
URL | |
Business Hours | |
Contact Instructions |
* » Support Role | Metadata Contact |
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* » Date Effective From | 2015 |
Date Effective To | 2021 |
Person | DesRochers, Annette M |
Address |
1845 Wasp Blvd. Honolulu, HI 96818 USA |
Email Address | annette.desrochers@noaa.gov |
Phone | (808)725-5461 |
Fax | |
Mobile | |
URL | |
Business Hours | 8 am - 5 pm |
Contact Instructions |
* » Support Role | Originator |
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* » Date Effective From | 2015 |
Date Effective To | |
Organization | Pacific Islands Fisheries Science Center (PIFSC) |
Address |
1845 Wasp Blvd. Honolulu, HI 96818 USA |
Email Address | pifsc.info@noaa.gov |
Phone | 808-725-5360 |
Fax | |
Mobile | |
URL | https://www.pifsc.noaa.gov |
Business Hours | 8:00 a.m. - 4:30 p.m. |
Contact Instructions |
* » Support Role | Point of Contact |
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* » Date Effective From | 2018 |
Date Effective To | |
Person | Barkley, Hannah C |
Address |
1845 Wasp Blvd. Honolulu, HI 96818 USA |
Email Address | hannah.barkley@noaa.gov |
Phone | |
Fax | |
Mobile | |
URL | |
Business Hours | |
Contact Instructions |
* » Support Role | Point of Contact |
---|---|
* » Date Effective From | 2015 |
Date Effective To | 2017 |
Person | Oliver, Thomas |
Address |
1845 Wasp Blvd. Honolulu, HI 96818 USA |
Email Address | thomas.oliver@noaa.gov |
Phone | (808)725-5444 |
Fax | |
Mobile | |
URL | |
Business Hours | |
Contact Instructions |
Email preferred |
* » Support Role | |
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* » Date Effective From | |
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* » Contact | |
* Contact Instructions |
* » Support Role | |
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* » Date Effective From | |
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* » Contact | |
* Contact Instructions |
* » Support Role | |
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* » Date Effective From | |
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* » Contact | |
* Contact Instructions |
Extents
Currentness Reference | Ground Condition |
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Extent Group 1
Extent Description |
Mabini and Tingloy in Batangas, Philippines |
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Extent Group 1 / Geographic Area 1
* » W° Bound | 120.8837 |
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* » E° Bound | 120.895127 |
* » N° Bound | 13.727882 |
* » S° Bound | 13.658594 |
* » Description |
Diel survey locations in the municipalities of Mabini and Tingloy in Batangas, Philippines (near the Verde Island Passage), including Batong Buhay, Twin Rocks, and Batalang Bato. |
Extent Group 1 / Vertical Extent
EPSG Code | |
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Vertical Minimum | |
Vertical Maximum |
Extent Group 1 / Time Frame 1
* » Time Frame Type | Range |
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* » Start | 2015-05-21 |
End | 2015-05-31 |
Alternate Start As Of Info | MP1507 |
Alternate End As Of Info | |
Description |
Time period of diel surveys. |
Spatial Information
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Access Information
Data License | |
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Data License URL | |
Data License Statement | |
* » Security Class | Unclassified |
* Security Classification System |
Not applicable |
Security Handling Description |
Not applicable |
• Data Access Policy |
NOAA Ecosystem Sciences Division (ESD) Data Sharing Recommendations, version 9.0 updated August 12, 2015: ESD welcomes the opportunity to collaborate on research issues contributing to the scientific basis for better management of marine ecosystems. ESD has a very diverse set of field activities that generates large volumes of data using an array of data collection protocols. The following recommendations are for your consideration as you use this data: 1) Data analyses should take all field exigencies into account. The most effective way to do this would be active collaboration with ESD principal investigators. 2) In all presentations, product releases, or publications using data generated by ESD, proper acknowledgement of both ESD and the individuals responsible for data collection is expected. Citing the DOI (if available) is preferred, a non-DOI example is listed below. 3) If you collect or generate data for the same study areas, ESD requests that you share relevant information on complimentary data collections. 4) Those receiving data are strongly urged to inform the ESD Data Management Team of any errors and discrepancies that are discovered during the course of using these data. They are further urged to bring to the attention of the Team all problems and difficulties encountered in using these data. This information is necessary in order to improve the collections and to facilitate more efficient and economical data processing and retrieval. The users are asked to supply copies of any missing data that may be located, and to provide information as to significant subsets and special aggregations of data that are developed in using the material provided. Example citation: "This publication makes use of data products provided by the Ecosystem Sciences Division (ESD), Pacific Islands Fisheries Science Center (PIFSC), National Marine Fisheries Service (NMFS), National Oceanic and Atmospheric Administration (NOAA), with funding support from the NOAA Coral Reef Conservation Program (CRCP). The analysis and interpretations presented here are solely that of the current authors.” |
» Data Access Procedure |
Data can be accessed online via the NOAA National Centers for Environmental Information (NCEI) Ocean Archive. |
• » Data Access Constraints |
None |
• Data Use Constraints |
These oceanographic data are PRELIMINARY data and have not been screened for accuracy. NOAA can not be held liable for use of these data in a manner other than for perusal of preliminary oceanographic data for scientific research on coral reefs ecosystems. Please cite PIFSC Ecosystem Sciences Division (ESD) when using the data. Suggested citation: Ecosystem Sciences Division; Pacific Islands Fisheries Science Center, 2019: Diel seawater carbonate chemistry observations from a suite of instrumentation deployed at coral reef sites in Batangas, Philippines from May 21-31, 2015, https://www.fisheries.noaa.gov/inport/item/45954. |
Metadata Access Constraints |
None |
Metadata Use Constraints |
None |
Distribution Information
Start Date | |
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» Download URL | https://accession.nodc.noaa.gov/0189727 |
Distributor | NOAA National Centers for Environmental Information (NCEI) (2019 - Present) |
File Name | ESD_CTI_DS_2015_CT |
Description |
Directory folder that contains all instrument datasets as well as the summary file for the diel suite deployments in Batangas, Philippines in 2015. |
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» Download URL | https://accession.nodc.noaa.gov/0189727 |
Distributor | NOAA National Centers for Environmental Information (NCEI) (2019 - Present) |
File Name | ESD_CTI_DS_2015_CT_ADCP |
Description |
Instrument data from ADCP in the 2015 diel suite deployments in the Philippines. |
File Date/Time | |
File Type (Deprecated) | csv |
Distribution Format | CSV - Comma Separated Values (Text) |
File Size | 813KB |
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» Download URL | https://accession.nodc.noaa.gov/0189727 |
Distributor | NOAA National Centers for Environmental Information (NCEI) (2019 - Present) |
File Name | ESD_CTI_DS_2015_CT_CTD |
Description |
Instrument data from CTD sensor in diel suite deployments. |
File Date/Time | |
File Type (Deprecated) | csv |
Distribution Format | CSV - Comma Separated Values (Text) |
File Size | 140KB |
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» Download URL | https://accession.nodc.noaa.gov/0189727 |
Distributor | NOAA National Centers for Environmental Information (NCEI) (2019 - Present) |
File Name | ESD_CTI_DS_2015_CT_DO |
Description |
Instrument data from the SBE-43 oxygen sensor co-located with the CTD during diel suite deployments in Batangas, Philippines in 2015. |
File Date/Time | |
File Type (Deprecated) | csv (comma-separated values) |
Distribution Format | CSV - Comma Separated Values (Text) |
File Size | 120KB |
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» Download URL | https://accession.nodc.noaa.gov/0189727 |
Distributor | NOAA National Centers for Environmental Information (NCEI) (2019 - Present) |
File Name | ESD_CTI_DS_2015_CT_H2O |
Description |
Calculated carbonate chemistry data from the water samples collected with diel suite deployment in Batangas, Philippines in 2015. Includes columns as necessary for outsourcing the water sample analysis. Refer to data dictionary for details. |
File Date/Time | |
File Type (Deprecated) | csv (comma-separated values) |
Distribution Format | CSV - Comma Separated Values (Text) |
File Size | 11KB |
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» Download URL | https://accession.nodc.noaa.gov/0189727 |
Distributor | NOAA National Centers for Environmental Information (NCEI) (2019 - Present) |
File Name | ESD_CTI_DS_2015_CT_PH |
Description |
Instrument data from pH sensor in diel suite deployed. |
File Date/Time | |
File Type (Deprecated) | csv |
Distribution Format | CSV - Comma Separated Values (Text) |
File Size | 234KB |
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» Download URL | https://accession.nodc.noaa.gov/0189727 |
Distributor | NOAA National Centers for Environmental Information (NCEI) (2019 - Present) |
File Name | ESD_CTI_DS_2015_CT_SUMMARY |
Description |
Summary of the diel suite deployment in 2015 with information on the cruise and specific sites, as well as instruments and sampling intervals; different instruments could be deployed at different sites or instruments could have malfunctioned. |
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File Type (Deprecated) | csv |
Distribution Format | CSV - Comma Separated Values (Text) |
File Size | 2KB |
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URLs
URL | https://www.fisheries.noaa.gov/pacific-islands/ecosystems/surveying-vast-ocean |
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Name | Ecosystem Sciences |
URL Type | Online Resource |
File Resource Format | |
Description |
Pacific Islands Fisheries Science Center website |
URL | https://pifscblog.wordpress.com/2013/03/06/verde-island-passage/ |
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Name | Blog post: 2013 field mission to the Philippines |
URL Type | Online Resource |
File Resource Format | |
Description |
NOAA PIFSC Coral Reef Ecosystem Program blog post from the 2013 mission to the Philippines. |
URL | https://www.coraltriangleinitiative.org |
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Name | Coral Triangle Initiative |
URL Type | Online Resource |
File Resource Format | |
Description |
Official website |
URL | https://www.fisheries.noaa.gov/region/pacific-islands#science |
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Name | PIFSC website |
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Official website for the PIFSC. |
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Technical Environment
Description |
Raw data are downloaded from the instruments, processed in R, and migrated to the PIFSC Oracle database. Water sample data is stored in an MS Access database. |
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Data Quality
Representativeness |
Seawater carbonate chemistry at the benthos is dynamic and driven by physical and biological processes occurring at time scales of minutes to days. The measurements and analyses from this instrument suite is representative of the water column chemistry at the time of measurement, but this highly variable environment allows for a fairly wide distribution of measured values. |
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Accuracy |
Water samples: accuracy of seawater carbonate chemistry laboratory analysis is explained in detail in Dickson et al (2007), SOP #2: Determination of total dissolved inorganic carbon in sea water, and SOP #3b: Determination of total alkalinity in sea water using an open-cell titration. Satlantic SeaFET Ocean pH sensor: measurement range: 6.5-9.0 pH; salinity range: 2-40 psu; accuracy: +/- 0.05 pH; precision: better than 0.001 pH; resolution: 0.0001 pH; stability: 0.005 pH/mo SBE-19plus CTD sensor: Conductivity - measurement range: 0-9 S/m; accuracy: +/- 0.0005 S/m; stability: 0.0003 S/m per month; resolution: 0.00005 S/m; Temperature - measurement range: -5-35 deg C; accuracy: +/-0.005 deg C; stability: 0.0002 deg C per month; resolution: 0.0001 deg C; Pressure - measurement range: 0-600 m; accuracy: +/- 0.1%; stability: +/- 0.1%; resolution: 0.002% SBE 43 oxygen sensor: Measurement range: 120% surface saturation; accuracy: +/- 2% of saturation; stability: 0.5% per 1000 hours Nortek Acoustic Doppler Current Profiler 1MHz: Profiling range: 12-25 m; accuracy: +/- 1% |
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Completeness Measure |
The entire suite of instrumentation is deployed during diel surveys; however, various issues can occur with any one or several of the instruments during the deployment thereby limiting the data recovered. While PUCs are programmed to collect water on this regular sampling schedule, issues with the pumps can occasionally result in missing samples for some of the time steps. |
Precision | |
Analytical Precision | |
Field Precision |
Redundant data are collected to ensure accuracy of the methods/instrumentation. pH is captured from the discrete water samples and pH sensor. Pressure is captured by the ADCP and the CTD. Temperature is captured by the pH sensor and the CTD. |
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Detection Limit | |
Completeness Report |
All analyzed samples and measured values are included. NULL values in the data, where they exist, indicate that the observation/analysis was not conducted for the sample record where it appears. |
Conceptual Consistency |
The data are very consistent, sample collection and processing protocols detailed in Dickson et al (2007) are adhered to rigorously, both in the field (SOP #1) and in the laboratory (SOP #2 and #3b). |
» Quality Control Procedures Employed |
The data is quality controlled by NOAA PIFSC Ecosystem Sciences Division (ESD) personnel after the data is downloaded from the instruments, after it is migrated to the database, and once again when the data are submitted to the NOAA National Centers for Environmental Information. NOAA Pacific Marine Environmental Laboratory (PMEL) conducts quality assurance and quality control on their seawater analyses according to protocols #2 and #3b in Dickson et al (2007). |
Data Management
» Have Resources for Management of these Data Been Identified? | Yes |
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» Approximate Percentage of Budget for these Data Devoted to Data Management | Unknown |
» Do these Data Comply with the Data Access Directive? | Yes |
» Is Access to the Data Limited Based on an Approved Waiver? | No |
» If Distributor (Data Hosting Service) is Needed, Please Indicate | |
» Approximate Delay Between Data Collection and Dissemination | Unknown |
» If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed | |
» Actual or Planned Long-Term Data Archive Location | NCEI-MD |
» Approximate Delay Between Data Collection and Archiving | Unknown |
» How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive? |
NOAA IRC and NOAA Fisheries ITS resources and assets. |
Lineage
» Lineage Statement |
The ocean acidification diel suite is a collection of instruments deployed by SCUBA divers onto the seafloor that makes autonomous measurements and collects seawater samples. For a typical deployment, the diel suite consists of: 1 Sea Bird Electronics (SBE)-19plus CTD, 1 Nortek Acoustic Doppler Current Profiler (ADCP), 1 Satlantic SeaFET Ocean pH sensor, 1 SBE 43 dissolved oxygen sensor, and up to 9 Programmable Underwater Collectors (PUCs), where each PUC collects 1 water sample at a 4-hour interval over a minimum 24-hour period. All instruments are weighted or zip-tied to rubble on the seafloor, or both, to secure the position of the instrumentation for the duration of the deployment. |
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Sources
Citation Title | Dickson, A.G., Sabine, C.L. and Christian, J.R. (Eds.) 2007. Guide to best practices for ocean CO2 measurements. PICES Special Publication 3, 191 pp. |
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Publish Date | 2007-10-01 |
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Citation URL | https://www.nodc.noaa.gov/ocads/oceans/Handbook_2007.html |
Citation URL Name | Ocean Carbon Data System (OCADS), Access Data |
Citation URL Description |
Guide to Best Practices for Ocean CO2 Measurements |
Source Contribution |
Dickson et al (2007) Protocols to collect, process, and analyze water samples for DIC and TA: SOP 1: Water Sampling for the parameters of the oceanic carbon dioxide system SOP 2: Determination of total dissolved inorganic carbon in sea water SOP 3b: Determination of total alkalinity in sea water using an open-cell titration |
Citation Title | SOP for instrument data processing using the R package occ |
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Contact Role Type | Originator |
Contact Type | Person |
Contact Name | Hannah Barkley |
Publish Date | 2019-05-31 |
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Citation URL | https://rpubs.com/hbarkley/occ_SOP |
Citation URL Name | RPubs |
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Easy web publishing from R |
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Process Steps
Process Step Number | 1 |
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» Description |
Water samples collected with Programmable Underwater Collectors (PUC) Developed by Dr. Chris Langdon's laboratory at the University of Miami, PUCs are computerized timers attached to a low-power peristaltic pump. An array of PUCs collects water samples at 4-hour intervals over the course of at least 24-hours, usually starting at 12:00 pm local time on day 1 and ending at 12:00 pm on day 2. While PUCs are programmed to collect water on this regular sampling schedule, issues with the pumps can occasionally result in missing samples for some of the time steps. Samples are collected underwater in tedlar bags pre-poisoned with mercuric chloride and transferred to glass bottles within a few hours of recovery. Water samples are analyzed for DIC using a coulometer (SOP #2) and for TA using a titrator (SPO #3b) by the NOAA Pacific Marine Environmental Laboratory. Full carbon system chemistry values (including pH, pCO2, and aragonite saturation state) are derived from DIC/TA and salinity/temperature/pressure data from a co-deployed CTD using the R package seacarb. Discrete sample pH data are compared to SeaFET pH data. |
Process Date/Time | |
Process Contact | Barkley, Hannah C |
Phone (Voice) | |
Email Address | hannah.barkley@noaa.gov |
Source | Dickson, A.G., Sabine, C.L. and Christian, J.R. (Eds.) 2007. Guide to best practices for ocean CO2 measurements. PICES Special Publication 3, 191 pp. |
Process Step Number | 2 |
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» Description |
Acoustic Doppler Current Profiler (ADCP) sensor The diel suite includes either a side-looking ADCP. ADCP measurements are collected at 10 minute intervals and binned by height above the sensor. Each height bin is represented in the data set as the upper limit of the bin height above the sensor on the seafloor (for example, a 1.4 m bin represents current data collected between 0.4 m and 1.4 m above the ADCP). ADCP data include a blanking region, or a small distance in front of the transducer in which measurements cannot be made, of 0.2-0.4 m. Current data are grouped into 1-m height bins. Raw data downloaded from the ADCP are processed in R using the oce package. XYZ coordinate data are converted to ENU (east-north-up) coordinate system. Current speed is calculated as the square root of the sum of the squared u and v velocities and direction as the arctan(v/u). Data are trimmed to a maximum height bin for each time step using pressure data to remove above-water signal. As a result, NULL values may exist for larger height bins above the surface of the water due to waves and tides. |
Process Date/Time | |
Process Contact | Barkley, Hannah C |
Phone (Voice) | |
Email Address | hannah.barkley@noaa.gov |
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Process Step Number | 3 |
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» Description |
Conductivity-Temperature-Depth (CTD) sensor CTD data are collected by a Sea Bird Electronics 19plus v2 SeaCAT every 10 minutes. Data are uploaded as HEX files, converted to CNV using SBE Data Processing Software, and converted to CSV using the 'oce' package in R. |
Process Date/Time | |
Process Contact | Barkley, Hannah C |
Phone (Voice) | |
Email Address | hannah.barkley@noaa.gov |
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Process Step Number | 4 |
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» Description |
SeaFET pH sensor The SeaFET pH measures in-situ pH using a solid state ISFET sensor with an AgCl external reference electrode. The electrode is conditioned in running seawater up to a week prior to deployment and stored in artificial seawater between deployments. pH data are collected in bursts of 30 measurements every 5 minutes. The SeaFET is co-deployed with a CTD, and temperature and salinity values from the CTD time series are used to correct the raw pH time series. The SeaFET derives pH from both internal and external potentiometric cells, but only external pH is reported. SeaFET pH values are compared to pH values calculated from discrete TA and DIC samples collected at the same time and location. |
Process Date/Time | |
Process Contact | Barkley, Hannah C |
Phone (Voice) | |
Email Address | hannah.barkley@noaa.gov |
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Process Step Number | 5 |
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» Description |
Dissolved oxygen sensor An SBE-43 dissolved oxygen sensor is co-located with the SBE-19plus CTD. |
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Process Contact | Barkley, Hannah C |
Phone (Voice) | |
Email Address | hannah.barkley@noaa.gov |
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Acquisition Information
Instruments
Identifier | Aquadopp Profiler |
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Docucomp UUID | |
Instrument / Gear | Instrument |
Instrument Type | acoustic doppler current profiler (ADCP) |
Description |
Current profiler: Nortek Aquadopp Profiler 1 MHz or 2 MHz. Small and compact, with up to 25 m or 40 m current profiling range, respectively. |
Identifier | Programmable Underwater Collector (PUC) |
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Docucomp UUID | |
Instrument / Gear | Instrument |
Instrument Type | Water Sampler |
Description |
Programmable Underwater Collectors (PUC) are computerized timers attached to a low-power peristaltic pump to collect water samples at episodic intervals (i.e., every 4 hrs over a 24-hr period). Designed and Developed by Dr. Chris Langdon’s laboratory at the University of Miami, Rosenstiel School of Marine and Atmospheric Science. |
Identifier | SBE 19plus V2 |
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Docucomp UUID | d834d7e0-70dd-11e0-a1f0-0800200c9a66 |
Instrument / Gear | Instrument |
Instrument Type | conductivity, temperature, depth |
Description |
The SBE 19plus V2 (Version 2) SEACAT Profiler measures conductivity, temperature, and pressure (depth) and provides high accuracy and resolution, reliability, and ease-of-use for a wide range of research, monitoring, and engineering applications. The pump-controlled, TC-ducted flow configuration minimizes salinity spiking caused by ship heave and allows for slow descent rates without slowing sensor responses, improving dynamic accuracy and resolving small scale structure in the water column. |
Identifier | SeaFET v2 |
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Docucomp UUID | |
Instrument / Gear | Instrument |
Instrument Type | Ocean pH Sensor |
Description |
SeaFET v2 Ocean pH Sensor measures in-situ pH using a solid state ISFET sensor with an AgCl external reference electrode. |
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Platforms
Identifier | Diel Suite | ||||||||
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Description |
The Ocean Acidification Diel Suite is not a physical platform (boat, buoy, etc.), but rather a collection of instruments deployed together on the seafloor that makes autonomous measurements and collects seawater samples, which allows for the quantification of 24-hr variability in seawater carbonate chemistry present at the reef. |
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FAQs
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Child Items
Rubric scores updated every 15m
Score | Type | Title |
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Entity (ENT) | ESD_DS_DataDict_2015_CT_ADCP | |
Entity (ENT) | ESD_DS_DataDict_2015_CT_CTD | |
Entity (ENT) | ESD_DS_DataDict_2015_CT_H2O | |
Entity (ENT) | ESD_DS_DataDict_2015_CT_PH | |
Entity (ENT) | ESD_DS_DataDict_2015_CT_SUMMARY | |
Related Items
Catalog Details
Catalog Item ID | 45954 |
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Metadata Record Created By | Annette M DesRochers |
Metadata Record Created | 2017-05-02 20:29+0000 |
Metadata Record Last Modified By | SysAdmin InPortAdmin |
» Metadata Record Last Modified | 2024-10-03 18:16+0000 |
Metadata Record Published | 2021-09-01 |
Owner Org | PIFSC |
Metadata Publication Status | Published Externally |
Do Not Publish? | N |
Metadata Workflow State | Published / External |
Metadata Last Review Date | 2021-09-01 |
Metadata Review Frequency | 1 Year |
Metadata Next Review Date | 2022-09-01 |
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