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Summary
Item Identification
Keywords
Physical Location
Entity Info
Support Roles
Extents
Access Info
Distribution Info
Catalog Details

Summary

Abstract

Raw DNA chromatogram data produced by the ABI 373, 377, 3130 and 3730 automated sequencing machines in ABI format. These are from fish (primarily Sebastes spp., Seriola lalandi, and several shark species) and invertebrates (primarily Haliotis spp.). These data are in either of 2 formats, ".fsa" files containing chromatograms used for genotyping, and ".ab1" files containing chromatograms of DNA sequences. These data are used for studies on taxonomy, population connectivity, species identification, and studies of mating systems

Description

Report of all .ab1 files generated.

Distribution Information

Access Constraints:

There are no restrictions or prerequisites for accessing these data.

Child Items

No Child Items for this record.

Contact Information

Point of Contact
John R Hyde
John.Hyde@noaa.gov
(858) 546-7086

Metadata Contact
John R Hyde
John.Hyde@noaa.gov
(858) 546-7086

Extents

Geographic Area 1

-180° W, 180° E, 90° N, -90° S

Global sample collections with primary area of focus in the northeast Pacific

Time Frame 1
1991 - Present

Item Identification

Title: FRD DNA Data
Status: In Work
Creation Date: Unknown
Revision Date: 2019-06-17
Abstract:

Raw DNA chromatogram data produced by the ABI 373, 377, 3130 and 3730 automated sequencing machines in ABI format. These are from fish (primarily Sebastes spp., Seriola lalandi, and several shark species) and invertebrates (primarily Haliotis spp.). These data are in either of 2 formats, ".fsa" files containing chromatograms used for genotyping, and ".ab1" files containing chromatograms of DNA sequences. These data are used for studies on taxonomy, population connectivity, species identification, and studies of mating systems

Purpose:

Data are used in support of studies on taxonomy, population connectivity, species identification, and studies of mating systems of fish and invertebrates.

Keywords

Theme Keywords

Thesaurus Keyword
UNCONTROLLED
None abalone
None anchovy
None DNA sequence
None genotyping
None opah
None sardine
None shark
None yellowtail

Physical Location

Organization: Southwest Fisheries Science Center
City: La Jolla
State/Province: CA
Country: USA

Entity Information

Entity Type: Report
Active Version?: Yes
Description:

Report of all .ab1 files generated.

Support Roles

Data Steward

CC ID: 856585
Date Effective From: 2015
Date Effective To:
Contact (Person): Hyde, John R
Address: 8901 La Jolla Shores Dr
La Jolla, CA 92037
USA
Email Address: John.Hyde@noaa.gov
Phone: (858) 546-7086
Fax: (858) 546-7003
Business Hours: 8:00 AM - 4:30 PM

Distributor

CC ID: 856586
Date Effective From: 2015
Date Effective To:
Contact (Organization): Southwest Fisheries Science Center (SWFSC)
Address: 8901 La Jolla Shores Dr.
La Jolla, CA 92037
USA
Phone: (858)546-7000
URL: http://swfsc.noaa.gov/
Business Hours: 8:00-16:30

Metadata Contact

CC ID: 856588
Date Effective From: 2015
Date Effective To:
Contact (Person): Hyde, John R
Address: 8901 La Jolla Shores Dr
La Jolla, CA 92037
USA
Email Address: John.Hyde@noaa.gov
Phone: (858) 546-7086
Fax: (858) 546-7003
Business Hours: 8:00 AM - 4:30 PM

Point of Contact

CC ID: 856587
Date Effective From: 2015
Date Effective To:
Contact (Person): Hyde, John R
Address: 8901 La Jolla Shores Dr
La Jolla, CA 92037
USA
Email Address: John.Hyde@noaa.gov
Phone: (858) 546-7086
Fax: (858) 546-7003
Business Hours: 8:00 AM - 4:30 PM

Extents

Extent Group 1

Extent Group 1 / Geographic Area 1

CC ID: 856592
W° Bound: -180
E° Bound: 180
N° Bound: 90
S° Bound: -90
Description

Global sample collections with primary area of focus in the northeast Pacific

Extent Group 1 / Time Frame 1

CC ID: 856591
Time Frame Type: Continuing
Start: 1991

Access Information

Security Class: Unclassified
Data Access Policy:

There are no restrictions on access to these data.

Data Access Procedure:

Contact John Hyde at John.Hyde@noaa.gov

Data Access Constraints:

There are no restrictions or prerequisites for accessing these data.

Distribution Information

Distribution 1

CC ID: 856589
Start Date: 1997
End Date: Present
Download URL: https://swfsc.noaa.gov/
Distributor: Southwest Fisheries Science Center (SWFSC) (2015 - Present)
Description:

ABI raw chromatograms

File Type (Deprecated): *ask Mihir to add ab1

Catalog Details

Catalog Item ID: 56689
GUID: gov.noaa.nmfs.inport:56689
Metadata Record Created By: Matthew T Craig
Metadata Record Created: 2019-06-18 10:58+0000
Metadata Record Last Modified By: SysAdmin InPortAdmin
Metadata Record Last Modified: 2022-08-09 17:11+0000
Metadata Record Published: 2019-06-19
Owner Org: SWFSC
Metadata Publication Status: Published Externally
Do Not Publish?: N
Metadata Last Review Date: 2019-06-19
Metadata Review Frequency: 1 Year
Metadata Next Review Date: 2020-06-19