FRD DNA Data
Entity (ENT) | Southwest Fisheries Science Center (SWFSC)GUID: gov.noaa.nmfs.inport:56689 | Updated: August 9, 2022 | Published / External
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Summary
Raw DNA chromatogram data produced by the ABI 373, 377, 3130 and 3730 automated sequencing machines in ABI format. These are from fish (primarily Sebastes spp., Seriola lalandi, and several shark species) and invertebrates (primarily Haliotis spp.). These data are in either of 2 formats, ".fsa" files containing chromatograms used for genotyping, and ".ab1" files containing chromatograms of DNA sequences. These data are used for studies on taxonomy, population connectivity, species identification, and studies of mating systems
DescriptionReport of all .ab1 files generated.
Distribution Information
-
ABI raw chromatograms
There are no restrictions or prerequisites for accessing these data.
Child Items
No Child Items for this record.
Contact Information
Point of Contact
John R Hyde
John.Hyde@noaa.gov
(858) 546-7086
Metadata Contact
John R Hyde
John.Hyde@noaa.gov
(858) 546-7086
Extents
-180° W,
180° E,
90° N,
-90° S
Global sample collections with primary area of focus in the northeast Pacific
1991 - Present
Item Identification
Title: | FRD DNA Data |
---|---|
Status: | In Work |
Creation Date: | Unknown |
Revision Date: | 2019-06-17 |
Abstract: |
Raw DNA chromatogram data produced by the ABI 373, 377, 3130 and 3730 automated sequencing machines in ABI format. These are from fish (primarily Sebastes spp., Seriola lalandi, and several shark species) and invertebrates (primarily Haliotis spp.). These data are in either of 2 formats, ".fsa" files containing chromatograms used for genotyping, and ".ab1" files containing chromatograms of DNA sequences. These data are used for studies on taxonomy, population connectivity, species identification, and studies of mating systems |
Purpose: |
Data are used in support of studies on taxonomy, population connectivity, species identification, and studies of mating systems of fish and invertebrates. |
Keywords
Theme Keywords
Thesaurus | Keyword |
---|---|
UNCONTROLLED | |
None | abalone |
None | anchovy |
None | DNA sequence |
None | genotyping |
None | opah |
None | sardine |
None | shark |
None | yellowtail |
Physical Location
Organization: | Southwest Fisheries Science Center |
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City: | La Jolla |
State/Province: | CA |
Country: | USA |
Entity Information
Entity Type: | Report |
---|---|
Active Version?: | Yes |
Description: |
Report of all .ab1 files generated. |
Support Roles
Data Steward
Date Effective From: | 2015 |
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Date Effective To: | |
Contact (Person): | Hyde, John R |
Address: |
8901 La Jolla Shores Dr La Jolla, CA 92037 USA |
Email Address: | John.Hyde@noaa.gov |
Phone: | (858) 546-7086 |
Fax: | (858) 546-7003 |
Business Hours: | 8:00 AM - 4:30 PM |
Distributor
Date Effective From: | 2015 |
---|---|
Date Effective To: | |
Contact (Organization): | Southwest Fisheries Science Center (SWFSC) |
Address: |
8901 La Jolla Shores Dr. La Jolla, CA 92037 USA |
Phone: | (858)546-7000 |
URL: | http://swfsc.noaa.gov/ |
Business Hours: | 8:00-16:30 |
Metadata Contact
Date Effective From: | 2015 |
---|---|
Date Effective To: | |
Contact (Person): | Hyde, John R |
Address: |
8901 La Jolla Shores Dr La Jolla, CA 92037 USA |
Email Address: | John.Hyde@noaa.gov |
Phone: | (858) 546-7086 |
Fax: | (858) 546-7003 |
Business Hours: | 8:00 AM - 4:30 PM |
Point of Contact
Date Effective From: | 2015 |
---|---|
Date Effective To: | |
Contact (Person): | Hyde, John R |
Address: |
8901 La Jolla Shores Dr La Jolla, CA 92037 USA |
Email Address: | John.Hyde@noaa.gov |
Phone: | (858) 546-7086 |
Fax: | (858) 546-7003 |
Business Hours: | 8:00 AM - 4:30 PM |
Extents
Extent Group 1
Extent Group 1 / Geographic Area 1
W° Bound: | -180 | |
---|---|---|
E° Bound: | 180 | |
N° Bound: | 90 | |
S° Bound: | -90 | |
Description |
Global sample collections with primary area of focus in the northeast Pacific |
Extent Group 1 / Time Frame 1
Time Frame Type: | Continuing |
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Start: | 1991 |
Access Information
Security Class: | Unclassified |
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Data Access Policy: |
There are no restrictions on access to these data. |
Data Access Procedure: |
Contact John Hyde at John.Hyde@noaa.gov |
Data Access Constraints: |
There are no restrictions or prerequisites for accessing these data. |
Distribution Information
Distribution 1
Start Date: | 1997 |
---|---|
End Date: | Present |
Download URL: | https://swfsc.noaa.gov/ |
Distributor: | Southwest Fisheries Science Center (SWFSC) (2015 - Present) |
Description: |
ABI raw chromatograms |
File Type (Deprecated): | *ask Mihir to add ab1 |
Catalog Details
Catalog Item ID: | 56689 |
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GUID: | gov.noaa.nmfs.inport:56689 |
Metadata Record Created By: | Matthew T Craig |
Metadata Record Created: | 2019-06-18 10:58+0000 |
Metadata Record Last Modified By: | SysAdmin InPortAdmin |
Metadata Record Last Modified: | 2022-08-09 17:11+0000 |
Metadata Record Published: | 2019-06-19 |
Owner Org: | SWFSC |
Metadata Publication Status: | Published Externally |
Do Not Publish?: | N |
Metadata Last Review Date: | 2019-06-19 |
Metadata Review Frequency: | 1 Year |
Metadata Next Review Date: | 2020-06-19 |