17812
Species detection and abundance using a biosensor - Development and Testing of in-situ Biological Sensors
Species detection and abundance using a biosensor (Development and Testing of in-situ Biological Sensors)
Data Set
Published / External
17696
Migrated from Environmental Conservation Division
Project
Completed
The Environmental Sample Processor (ESP), http://www.mbari.org/ESP/, is an autonomous biological sensing system that conducts in situ collection and molecular analysis of water samples and telemeters the results to shore in near real-time. The ESP can remotely detect and quantify abundance of target organisms using specific genetic probes. The probe generates a signal in the form of light, and an image of the array is taken using a camera and telemetered to shore for interpretation by experts. The intensity of the light signal is directly proportional to the abundance of the target that is present. Probes for 3 of the 4 primary HAB organisms in Puget Sound (i.e., Alexandrium, Heterosigma, and Pseudo-nitzschia) have already been used successfully on the ESP in the field. When deployed at key locations, the ESP can provide early warning of developing HABs and dramatically increase the opportunity for controlling the impacts of toxic blooms that can kill fish and contaminate shellfish. The goal of this project is to provide value added data to stakeholders in near real-time to improve early warning of HABs thereby reducing HAB-related economic losses and farmed-fish mortality and improving seafood safety. Another goal is to develop and test a method for use with the ESP to detect pathogenic Vibrio spp. (V. parahaemolyticus). Incorporating automated biosensor data into current risk and predictive models for the presence of HAB toxins and pathogens will result in a robust Health Early Warning System (HEWS). This work is designed to fill specific gaps in current risk and predictive models by providing rapid detection and reporting in real time for HABs and pathogens in conjunction with pertinent environmental data.
The project will produce datasets describing the abundance for specific harmful algae and pathogenic bacteria at deployment locations in Puget Sound.
Raw/field data, Monitoring or sensor data, Laboratory data
Loaded by batch 4101, 01-23-2013 15:25
These data are available to the public
Monitoring Program: Early warning of fish killing HABs via daily emails to stakeholders including fish farmers, shellfish farmers, and researchers
Data: Daily monitoring of HAB species that can kill fish and contaminate shellfish at key locations in Puget Sound during "at risk" time periods
Theme
PARR Exclusion
Program Dissolved
Theme
Biota, Habitat, Biological
Theme
Environmental
Theme
Ocean/Climate
Theme
Physical Measures: Air
Theme
Sediments
Theme
Water
Theme
biosensors
Theme
harmful algal bloom
Theme
health early warning systems
Theme
pathogens
Spatial
Friday Harbor, WA
Northwest Fisheries Science Center
Seattle
WA
USA
Data Set
Table (digital)
Unknown Instrument
Water based Platforms
Unknown Physical Collection Device
Data Steward
2015-10-01
Person
Trainer, Vera
Vera.L.Trainer@noaa.gov
2725 Montlake Boulevard East
Seattle
WA
98112
206-860-6788
Distributor
2015-10-01
Organization
Northwest Fisheries Science Center
NWFSC
nmfs.nwfsc.metadata@noaa.gov
2725 Montlake Boulevard East
Seattle
WA
98112
USA
206-860-3200
http://www.nwfsc.noaa.gov
NWFSC Home
Online Resource
Metadata Contact
2015-10-01
Person
Contact, Metadata
nmfs.nwfsc.metadata@noaa.gov
2725 Montlake Boulevard East
Seattle
WA
98112
USA
(206) 860-3433
Originator
2015-10-01
Person
Trainer, Vera
Vera.L.Trainer@noaa.gov
2725 Montlake Boulevard East
Seattle
WA
98112
206-860-6788
Point of Contact
2015-10-01
Person
Bolton, Jennie L
Jennie.Bolton@noaa.gov
2725 Montlake Boulevard East
Seattle
WA
98112
206-860-3359
206-860-3335
-123.016
-123.016
48.5348
48.5348
Friday Harbor, WA: Friday Harbor, WA
Range
2010-06-01
2012-09-30
Unclassified
submit request by email or telephone
NA
http://www.ncei.noaa.gov
http://www.ncei.noaa.gov
Access Database
High
Pre- & post-deployment QC checks, positive & negative controls, standard curves
No
5%
Yes
No
No
90 days
No Delay
No Archiving Intended
365 days
The Northwest Fisheries Science Center facilitates backup and recovery of all data and IT components which are managed by IT Operations through the capture of static (point-in-time) backup data to physical media. Once data is captured to physical media (every 1-3 days), a duplicate is made and routinely (weekly) transported to an offsite archive facility where it is maintained throughout the data's applicable life-cycle.
Image capture, image analysis, comparison to standard curve
NWFSC Annual Project Planning System
http://www.webapps.nwfsc.noaa.gov/4222
gov.noaa.nmfs.inport:17812
Jeffrey Cowen
2013-01-23T15:25:26
SysAdmin InPortAdmin
2022-08-09T17:11:07
2016-02-29
Northwest Fisheries Science Center
NWFSC
2725 Montlake Boulevard East
Seattle
WA
98112
USA
206-860-3200
http://www.nwfsc.noaa.gov
1001
Public
No
2016-02-29
1 Year
2017-02-28