30827
OBSOLETE: Coral genetic - Taxonomic and genetic identification of deep-sea corals in bycatch and field surveys -linked to groundfish survey dataset
Data Set
Published / External
17775
CB (Conservation Biology) Division
Project
Data for this project will reside in the West Coast Groundfish Bottom Trawl Survey Data Base. This proposal relates to a continuation and augmentation of our efforts in creating a DNA sequence repository and voucher collection of coral and sponge species found off the U.S. West Coast, and initial steps toward population-level analysis in deep-sea octocorals and sponges using microsatellite loci. We propose to continue taking genetic samples from specimens collected during the 2012 West Coast Groundfish Bottom Trawl Survey, and continue DNA sequencing of those specimens. We will then link the DNA data to our verified specimens to create a West Coast repository that will serve not only as an essential resource for coral researchers and other stakeholders, but also as a foundation for future research efforts at the NWFSC, aimed at understanding the biogeography and ecology of coral species in these deep-sea communities.
Our primary goals with this funding opportunity are to hire an NRC postdoctoral fellow to work full-time on this project, and to continue to support at-sea specimen collection.
Coral DNA represented by Data Set "Deep Sea Coral voucher sequence dataset".
Theme
PARR Exclusion
Obsolete
Northwest Fisheries Science Center
Seattle
WA
USA
Data Set
Other
DNA Sequencer
Platform Not Applicable
Unknown Physical Collection Device
Data Steward
2015-10-01
Person
Berntson, Ewann A
Ewann.Berntson@noaa.gov
2725 Montlake Boulevard East
Seattle
WA
98112
360-871-8333
Distributor
2015-10-01
Organization
Northwest Fisheries Science Center
NWFSC
nmfs.nwfsc.metadata@noaa.gov
2725 Montlake Boulevard East
Seattle
WA
98112
USA
206-860-3200
http://www.nwfsc.noaa.gov
NWFSC Home
Online Resource
Metadata Contact
2015-10-01
Person
Contact, Metadata
nmfs.nwfsc.metadata@noaa.gov
2725 Montlake Boulevard East
Seattle
WA
98112
USA
(206) 860-3433
Originator
2015-10-01
Person
Berntson, Ewann A
Ewann.Berntson@noaa.gov
2725 Montlake Boulevard East
Seattle
WA
98112
360-871-8333
Point of Contact
2015-10-01
Person
Barnas Torpey, Katie
Katie.Barnas@noaa.gov
2725 Montlake Boulevard East
Seattle
WA
98112
206-860-3363
-122.3062
-122.3062
47.6449
47.6449
NWFSC Montalke: NWFSC Montlake DNA lab
Range
2012-02-01
2015-09-28
-122.3062
-122.3062
47.6449
47.6449
California Current System: US-Canada to US-Mexico at depths of 55 to 1280 m
Range
2012-02-01
2015-09-28
Unclassified
At this time, contact the Data Manager for information on obtaining access to this data set. In the near future, the NWFSC will strive to provide all non-sensitive data resources as a web service in order to meet the NOAA Data Access Policy Directive (https://nosc.noaa.gov/EDMC/PD.DA.php).
NA
https://deepseacoraldata.noaa.gov/
https://deepseacoraldata.noaa.gov/
Sequencing quality checks: these data were collected and processed in accordance with established protocols and best practices under the direction of the projects Principal Investigator. Contact the dataset Data Manager for full QA/QC methodology.
Yes
15%
No
No
No
100 days
No Delay
Other
365 days
The Northwest Fisheries Science Center facilitates backup and recovery of all data and IT components which are managed by IT Operations through the capture of static (point-in-time) backup data to physical media. Once data is captured to physical media (every 1-3 days), a duplicate is made and routinely (weekly) transported to an offsite archive facility where it is maintained throughout the data's applicable life-cycle.
DNA extraction and sequencing, morphological identifications made, SEM images, QA/QC, phylogenetic analysis
NWFSC Annual Project Planning System
http://www.webapps.nwfsc.noaa.gov/10692
gov.noaa.nmfs.inport:30827
Jeffrey Cowen
2016-02-23T15:58:48
SysAdmin InPortAdmin
2022-08-09T17:11:07
2016-02-28
Northwest Fisheries Science Center
NWFSC
2725 Montlake Boulevard East
Seattle
WA
98112
USA
206-860-3200
http://www.nwfsc.noaa.gov
1001
Public
No
2016-02-28
1 Year
2017-02-28