DNA data
Southwest Fisheries Science Center
Data Set
(DS)
| ID: 20689
| Published / External
Created: 2013-09-26
|
Last Modified: 2022-08-09
Project (PRJ) | ID: 20684
ID: 20689
Data Set (DS)
* Discovery• First Pass
» Metadata Rubric
Item Identification
* » Title | DNA data |
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Short Name | DNA data |
* Status | In Work |
Creation Date | Unknown |
Revision Date | 2019-06-17 |
• Publication Date | |
* » Abstract |
Raw DNA chromatogram data produced by the ABI 373, 377, 3130 and 3730 automated sequencing machines in ABI format. These are from fish (primarily Sebastes spp., Seriola lalandi, and several shark species) and invertebrates (primarily Haliotis spp.). These data are in either of 2 formats, ".fsa" files containing chromatograms used for genotyping, and ".ab1" files containing chromatograms of DNA sequences. These data are used for studies on taxonomy, population connectivity, species identification, and studies of mating systems |
* Purpose |
Data are used in support of studies on taxonomy, population connectivity, species identification, and studies of mating systems of fish and invertebrates. |
Notes | |
Other Citation Details | |
• Supplemental Information | |
DOI (Digital Object Identifier) | |
DOI Registration Authority | |
DOI Issue Date |
Keywords
Theme Keywords
Thesaurus | Keyword |
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None | abalone |
None | anchovy |
None | DNA sequence |
None | genotyping |
None | opah |
None | sardine |
None | shark |
None | yellowtail |
Temporal Keywords
Thesaurus | Keyword |
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* Spatial Keywords
Thesaurus | Keyword |
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Stratum Keywords
Thesaurus | Keyword |
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Instrument Keywords
Thesaurus | Keyword |
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Platform Keywords
Thesaurus | Keyword |
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Physical Location
• » Organization | Southwest Fisheries Science Center |
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• » City | La Jolla |
• » State/Province | CA |
• Country | USA |
• » Location Description |
Data Set Information
* Data Set Scope Code | Data Set |
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• Data Set Type | Mixed |
• Maintenance Frequency | As Needed |
Maintenance Note | |
» Data Presentation Form | Raw sequence output files |
• Entity Attribute Overview | |
Entity Attribute Detail Citation | |
Entity Attribute Detail URL | |
Distribution Liability | |
Data Set Credit |
Support Roles
* » Support Role | Data Steward |
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* » Date Effective From | 2015 |
Date Effective To | |
Person | Hyde, John R |
Address |
8901 La Jolla Shores Dr La Jolla, CA 92037 USA |
Email Address | John.Hyde@noaa.gov |
Phone | (858) 546-7086 |
Fax | (858) 546-7003 |
Mobile | |
URL | |
Business Hours | 8:00 AM - 4:30 PM |
Contact Instructions |
* » Support Role | Distributor |
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* » Date Effective From | 2015 |
Date Effective To | |
Organization | Southwest Fisheries Science Center (SWFSC) |
Address |
8901 La Jolla Shores Dr. La Jolla, CA 92037 USA |
Email Address | |
Phone | (858)546-7000 |
Fax | |
Mobile | |
URL | http://swfsc.noaa.gov/ |
Business Hours | 8:00-16:30 |
Contact Instructions |
* » Support Role | Metadata Contact |
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* » Date Effective From | 2015 |
Date Effective To | |
Person | Hyde, John R |
Address |
8901 La Jolla Shores Dr La Jolla, CA 92037 USA |
Email Address | John.Hyde@noaa.gov |
Phone | (858) 546-7086 |
Fax | (858) 546-7003 |
Mobile | |
URL | |
Business Hours | 8:00 AM - 4:30 PM |
Contact Instructions |
* » Support Role | Point of Contact |
---|---|
* » Date Effective From | 2015 |
Date Effective To | |
Person | Hyde, John R |
Address |
8901 La Jolla Shores Dr La Jolla, CA 92037 USA |
Email Address | John.Hyde@noaa.gov |
Phone | (858) 546-7086 |
Fax | (858) 546-7003 |
Mobile | |
URL | |
Business Hours | 8:00 AM - 4:30 PM |
Contact Instructions |
* » Support Role | |
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* » Date Effective From | |
Date Effective To | |
* » Contact | |
* Contact Instructions |
* » Support Role | |
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* » Date Effective From | |
Date Effective To | |
* » Contact | |
* Contact Instructions |
* » Support Role | |
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* » Date Effective From | |
Date Effective To | |
* » Contact | |
* Contact Instructions |
Extents
Currentness Reference |
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Extent Group 1
Extent Description |
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Extent Group 1 / Geographic Area 1
* » W° Bound | -180 |
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* » E° Bound | 180 |
* » N° Bound | 90 |
* » S° Bound | -90 |
* » Description |
Global sample collections with primary area of focus in the northeast Pacific |
Extent Group 1 / Vertical Extent
EPSG Code | |
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Vertical Minimum | |
Vertical Maximum |
Extent Group 1 / Time Frame 1
* » Time Frame Type | Continuing |
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* » Start | 1991 |
End | |
Alternate Start As Of Info | |
Alternate End As Of Info | |
Description |
Spatial Information
Spatial Resolution
Angular Distance | |
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Angular Distance Units | |
Horizontal Distance | |
Horizontal Distance Units | |
Vertical Distance | |
Vertical Distance Units | |
Equivalent Scale Denominator | |
Level of Detail Description |
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Spatial Representation
Grid Representation Used? | |
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Vector Representation Used? | |
Text / Table Representation Used? | |
TIN Representation Used? | |
Stereo Model Representation Used? | |
Video Representation Used? |
Grid Representation
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Vector Representation
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Composite Object Present? | |
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Curve Object Present? | |
Curve Object Count | |
Point Object Present? | |
Point Object Count | |
Solid Object Present? | |
Solid Object Count | |
Surface Object Present? | |
Surface Object Count |
Reference Systems
Reference System
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Horizontal Resolution |
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Vertical Resolution |
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Access Information
Data License | |
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Data License URL | |
Data License Statement | |
* » Security Class | Unclassified |
* Security Classification System | |
Security Handling Description | |
• Data Access Policy |
There are no restrictions on access to these data. |
» Data Access Procedure |
Contact John Hyde at John.Hyde@noaa.gov |
• » Data Access Constraints |
There are no restrictions or prerequisites for accessing these data. |
• Data Use Constraints | |
Metadata Access Constraints | |
Metadata Use Constraints |
Distribution Information
Start Date | 1997 |
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End Date | Present |
» Download URL | https://swfsc.noaa.gov/ |
Distributor | Southwest Fisheries Science Center (SWFSC) (2015 - Present) |
File Name | |
Description |
ABI raw chromatograms |
File Date/Time | |
File Type (Deprecated) | AB1 |
Distribution Format | |
File Size | |
Application Version | |
Compression | |
Review Status |
Start Date | |
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End Date | |
» Download URL | |
Distributor | |
File Name | |
Description | |
File Date/Time | |
File Type | |
FGDC Content Type | |
File Size | |
Application Version | |
Compression | |
Review Status |
Start Date | |
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End Date | |
» Download URL | |
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File Name | |
Description | |
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Compression | |
Review Status |
Start Date | |
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End Date | |
» Download URL | |
Distributor | |
File Name | |
Description | |
File Date/Time | |
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Review Status |
URLs
URL | |
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Name | |
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Description |
URL | |
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Name | |
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File Resource Format | |
Description |
URL | |
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Name | |
URL Type | |
File Resource Format | |
Description |
Activity Log
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Description |
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Responsible Party | |
Description |
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Description |
Issues
Issue Date | |
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Author | |
Issue |
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Author | |
Issue |
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Author | |
Issue |
Technical Environment
Description |
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Data Quality
Representativeness | |
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Accuracy | |
Analytical Accuracy | |
Horizontal Positional Accuracy | |
Vertical Positional Accuracy | |
Quantitation Limits | |
Bias | |
Comparability | |
Completeness Measure |
Contains 100% of files generated. |
Precision | |
Analytical Precision | |
Field Precision | |
Sensitivity | |
Detection Limit | |
Completeness Report | |
Conceptual Consistency | |
» Quality Control Procedures Employed |
DNA sequences are manually edited to remove low-quality data. |
Data Management
» Have Resources for Management of these Data Been Identified? | No |
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» Approximate Percentage of Budget for these Data Devoted to Data Management | Unknown |
» Do these Data Comply with the Data Access Directive? | No |
» Is Access to the Data Limited Based on an Approved Waiver? | No |
» If Distributor (Data Hosting Service) is Needed, Please Indicate | |
» Approximate Delay Between Data Collection and Dissemination | 1 year |
» If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed | |
» Actual or Planned Long-Term Data Archive Location | NCEI-MD |
» Approximate Delay Between Data Collection and Archiving | 1 year |
» How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive? |
Data are stored on a server at the Southwest Fisheries Science Center which has all appropriate access controls. |
Lineage
» Lineage Statement |
Samples are collected from a variety of gears, processed and sequenced in the laboratory. |
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Sources
Citation Title | DNA Data |
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Contact Role Type | Originator |
Contact Type | Organization |
Contact Name | Southwest Fisheries Science Center |
Publish Date | |
Extent Type | Continuing |
Extent Start Date/Time | 1997 |
Extent End Date/Time | |
Scale Denominator | |
Citation URL | https://swfsc.noaa.gov/ |
Citation URL Name | SWFSC |
Citation URL Description |
SWFSC Home page |
Source Contribution |
Citation Title | |
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Scale Denominator |
Process Steps
Process Step Number | 1 |
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» Description |
Organism collected. |
Process Date/Time | |
Process Contact | Hyde, John R |
Phone (Voice) | (858) 546-7086 |
Email Address | John.Hyde@noaa.gov |
Source | DNA Data |
Process Step Number | 2 |
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» Description |
Tissue subsample taken. |
Process Date/Time | |
Process Contact | Hyde, John R |
Phone (Voice) | (858) 546-7086 |
Email Address | John.Hyde@noaa.gov |
Source | DNA Data |
Process Step Number | 3 |
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» Description |
DNA extracted, PCR, and sequencing |
Process Date/Time | |
Process Contact | Hyde, John R |
Phone (Voice) | (858) 546-7086 |
Email Address | John.Hyde@noaa.gov |
Source | DNA Data |
Process Step Number | |
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» Description | |
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Source |
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» Description | |
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Source |
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» Description | |
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Process Contact | |
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Email Address | |
Source |
Acquisition Information
Instruments
Instrument Unavailable Reason |
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Identifier | |
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Docucomp UUID | |
Instrument / Gear | |
Instrument Type | |
Description |
Identifier | |
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Docucomp UUID | |
Instrument / Gear | |
Instrument Type | |
Description |
Identifier | |
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Docucomp UUID | |
Instrument / Gear | |
Instrument Type | |
Description |
Platforms
Platform Unavailable Reason |
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FAQs
Date | |
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Question | |
Answer |
Related Items
Item Type | Relationship Type | Title |
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Catalog Details
Catalog Item ID | 20689 |
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Metadata Record Created By | Edward D Weber |
Metadata Record Created | 2013-09-26 17:10+0000 |
Metadata Record Last Modified By | SysAdmin InPortAdmin |
» Metadata Record Last Modified | 2022-08-09 17:11+0000 |
Metadata Record Published | 2019-06-19 |
Owner Org | SWFSC |
Metadata Publication Status | Published Externally |
Do Not Publish? | N |
Metadata Workflow State | Published / External |
Metadata Last Review Date | 2019-06-19 |
Metadata Review Frequency | 1 Year |
Metadata Next Review Date | 2020-06-19 |
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