AFSC/NMML/CCEP: Sampling locations for harbor seal genetics in Washington and British Columbia
Alaska Fisheries Science Center
Data Set
(DS)
| ID: 32188
| Published / External
Created: 2016-04-08
|
Last Modified: 2024-10-03
Project (PRJ) | ID: 23110
ID: 32188
Data Set (DS)
* Discovery• First Pass
» Metadata Rubric
Item Identification
* » Title | AFSC/NMML/CCEP: Sampling locations for harbor seal genetics in Washington and British Columbia |
---|---|
Short Name | AFSC/NMML/CCEP: Sampling locations for harbor seal genetics in Washington and British Columbia |
* Status | Completed |
Creation Date | |
Revision Date | |
• Publication Date | |
* » Abstract |
Using skin samples from 777 unweaned pups collected in 9 different regions in WA state and British Columbia (WA Coastal Estuaries, WA North Coast, British Columbia, Boundary Bay, San Juan Islands, Smith/Minor Islands, Dungeness Spit, Hood Canal, South Puget Sound), the California Current Ecosystem Program at the Marine Mammal Laboratory/AFSC tested levels of genetic variation using mtDNA and 9 microsatellite loci. For both mtDNA and microsatellites we found the same four groupings. Previously, harbor seals were managed as two stocks: coastal and Inland waters. The data indicated that the harbor seals should be managed as four stocks: one on the Coast and three stocks in the Inland Waters. An additional 92 skin samples were collected opportunistically from non-pups. They have not yet been analyzed. |
* Purpose |
The CCEP of MML collected genetic samples from pups to determine stocks of harbor seals on Washington Coast and Inland Waters. Genetic samples from other age classes were also collected. |
Notes | |
Other Citation Details |
Cite data as: Huber, H.R., B.R. Dickerson, D.M. Lambourn, S.J.Jeffries (2016). Sampling location for harbor seal genetics in Washington and British Columbia from 1993-08-25 to 2009-09-23 (NCEI Accession 0148458). NOAA National Centers for Environmental Information. |
• Supplemental Information | |
DOI (Digital Object Identifier) | |
DOI Registration Authority | |
DOI Issue Date |
Keywords
Theme Keywords
Thesaurus | Keyword |
---|---|
None | Genetics |
None | Microsatellite DNA |
None | Mitochondrial DNA |
None | Pacific harbor seal |
None | Phoca vitulina |
None | Stock Definition |
Temporal Keywords
Thesaurus | Keyword |
---|---|
None | Pupping season |
* Spatial Keywords
Thesaurus | Keyword |
---|---|
None | British Columbia, Canada |
None | Washington coast |
None | Washington Inland Waters |
Stratum Keywords
Thesaurus | Keyword |
---|---|
Instrument Keywords
Thesaurus | Keyword |
---|---|
Platform Keywords
Thesaurus | Keyword |
---|---|
Physical Location
• » Organization | Alaska Fisheries Science Center |
---|---|
• » City | Seattle |
• » State/Province | WA |
• Country | USA |
• » Location Description |
Data Set Information
* Data Set Scope Code | Data Set |
---|---|
• Data Set Type | CSV Files |
• Maintenance Frequency | As Needed |
Maintenance Note | |
» Data Presentation Form | Table (digital) |
• Entity Attribute Overview |
The user is responsible for the results of any application of this data for other than its intended purpose. NOAA denies liability if the data are misused. Applications or inferences derived from the data should be carefully considered for accuracy. Whereas every effort has been made to ensure that these data are accurate and reliable within the limits of the current state of the art, NOAA cannot assume liability for any damages caused by any errors or omissions in the data, nor as a result of the failure of the data to function on a particular system. NOAA makes no warranty, expressed or implied, nor does the fact of distribution constitute such a warranty. |
Entity Attribute Detail Citation | |
Entity Attribute Detail URL | |
Distribution Liability | |
Data Set Credit |
Support Roles
* » Support Role | Data Steward |
---|---|
* » Date Effective From | 2016 |
Date Effective To | |
Person | Huber, Harriet |
Email Address | harriet.huber@noaa.gov |
Phone | |
Fax | |
Mobile | |
URL | |
Business Hours | |
Contact Instructions |
* » Support Role | Distributor |
---|---|
* » Date Effective From | 2016 |
Date Effective To | |
Organization | NOAA National Centers for Environmental Information (NCEI) |
Email Address | ncei.info@noaa.gov |
Phone | |
Fax | |
Mobile | |
URL | https://www.ncei.noaa.gov/contact |
Business Hours | |
Contact Instructions |
* » Support Role | Metadata Contact |
---|---|
* » Date Effective From | 2016 |
Date Effective To | |
Person | Orr, Tony |
Email Address | tony.orr@noaa.gov |
Phone | |
Fax | |
Mobile | |
URL | |
Business Hours | |
Contact Instructions |
* » Support Role | Originator |
---|---|
* » Date Effective From | 2016 |
Date Effective To | |
Person | Huber, Harriet |
Email Address | harriet.huber@noaa.gov |
Phone | |
Fax | |
Mobile | |
URL | |
Business Hours | |
Contact Instructions |
* » Support Role | Point of Contact |
---|---|
* » Date Effective From | 2016 |
Date Effective To | |
Person | Huber, Harriet |
Email Address | harriet.huber@noaa.gov |
Phone | |
Fax | |
Mobile | |
URL | |
Business Hours | |
Contact Instructions |
* » Support Role | Point of Contact |
---|---|
* » Date Effective From | 2016 |
Date Effective To | |
Person | Delong, Robert |
Email Address | robert.delong@noaa.gov |
Phone | |
Fax | |
Mobile | |
URL | |
Business Hours | |
Contact Instructions |
* » Support Role | |
---|---|
* » Date Effective From | |
Date Effective To | |
* » Contact | |
* Contact Instructions |
* » Support Role | |
---|---|
* » Date Effective From | |
Date Effective To | |
* » Contact | |
* Contact Instructions |
* » Support Role | |
---|---|
* » Date Effective From | |
Date Effective To | |
* » Contact | |
* Contact Instructions |
Extents
Currentness Reference |
---|
Extent Group 1
Extent Description |
---|
Extent Group 1 / Geographic Area 1
* » W° Bound | -127 |
---|---|
* » E° Bound | -122 |
* » N° Bound | 50 |
* » S° Bound | 46 |
* » Description |
Western Washington State Coast, British Columbia, and Inland waters (i.e. Salish Sea) |
Extent Group 1 / Vertical Extent
EPSG Code | |
---|---|
Vertical Minimum | |
Vertical Maximum |
Extent Group 1 / Time Frame
* » Time Frame Type | |
---|---|
* » Start | |
End | |
Alternate Start as of Info | |
Alternate End as of Info | |
Description |
Spatial Information
Spatial Resolution
Angular Distance | |
---|---|
Angular Distance Units | |
Horizontal Distance | |
Horizontal Distance Units | |
Vertical Distance | |
Vertical Distance Units | |
Equivalent Scale Denominator | |
Level of Detail Description |
|
Spatial Representation
Grid Representation Used? | |
---|---|
Vector Representation Used? | |
Text / Table Representation Used? | |
TIN Representation Used? | |
Stereo Model Representation Used? | |
Video Representation Used? |
Grid Representation
Dimension Count | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cell Geometry | |||||||||||||
Transformation Parameter Available? | |||||||||||||
Axis Dimension |
|||||||||||||
|
|||||||||||||
Axis Dimension |
|||||||||||||
|
Vector Representation
Topology Level | |
---|---|
Complex Object Present? | |
Complex Object Count | |
Composite Object Present? | |
Composite Object Count | |
Curve Object Present? | |
Curve Object Count | |
Point Object Present? | |
Point Object Count | |
Solid Object Present? | |
Solid Object Count | |
Surface Object Present? | |
Surface Object Count |
Reference Systems
Reference System
EPSG Code | |||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Horizontal Resolution |
|||||||||||||||||||||||||||||
|
|||||||||||||||||||||||||||||
Vertical Resolution |
|||||||||||||||||||||||||||||
|
Access Information
Data License | |
---|---|
Data License URL | |
Data License Statement | |
* » Security Class | Unclassified |
* Security Classification System |
None. |
Security Handling Description |
None. |
• Data Access Policy |
The dataset is archived with the NOAA National Centers for Environmental Information (NCEI). Acknowledgement of NOAA/NMFS/AFSC, as the source from which these data were obtained in any publications and/or other representations of these data is suggested. Communication and collaboration with dataset authors is strongly encouraged prior to use. |
» Data Access Procedure | |
• » Data Access Constraints |
There are no legal restrictions on access to the data. They reside in public domain and can be freely distributed. |
• Data Use Constraints |
User must read and fully comprehend the metadata prior to use. Applications or inferences derived from the data should be carefully considered for accuracy. Acknowledgement of NOAA/NMFS/AFSC, as the source from which these data were obtained in any publications and/or other representations of these, data is suggested. Data must be cited as: Huber, H.R., B.R. Dickerson, D.M. Lambourn, S.J.Jeffries (2016). Sampling location for harbor seal genetics in Washington and British Columbia from 1993-08-25 to 2009-09-23 (NCEI Accession 0148458). NOAA National Centers for Environmental Information. |
Metadata Access Constraints |
None. |
Metadata Use Constraints |
Metadata are subject to revision at any time and information within the metadata record should not be cited without author consent. Whereas every effort has been made to ensure that these data are accurate and reliable within the limits of the current state of the art, NOAA cannot assume liability for any damages caused by any errors or omissions in the data, nor as a result of the failure of the data to function on a particular system. NOAA makes no warranty, expressed or implied, nor does the fact of distribution constitute such a warranty. |
Distribution Information
Start Date | |
---|---|
» Download URL | https://data.nodc.noaa.gov/cgi-bin/iso?id=gov.noaa.nodc:0148458 |
Distributor | NOAA National Centers for Environmental Information (NCEI) (2016 - Present) |
File Name | CCEP Harbor Seal Genetic Location Information.csv |
Description | |
File Date/Time | |
File Type (Deprecated) | csv (comma-separated values) |
Distribution Format | CSV - Comma Separated Values (Text) |
File Size | |
Application Version | |
Compression | |
Review Status |
Start Date | |
---|---|
End Date | |
» Download URL | |
Distributor | |
File Name | |
Description | |
File Date/Time | |
File Type | |
FGDC Content Type | |
File Size | |
Application Version | |
Compression | |
Review Status |
Start Date | |
---|---|
End Date | |
» Download URL | |
Distributor | |
File Name | |
Description | |
File Date/Time | |
File Type | |
FGDC Content Type | |
File Size | |
Application Version | |
Compression | |
Review Status |
Start Date | |
---|---|
End Date | |
» Download URL | |
Distributor | |
File Name | |
Description | |
File Date/Time | |
File Type | |
FGDC Content Type | |
File Size | |
Application Version | |
Compression | |
Review Status |
Archive Information
Location | |
---|---|
File Identifier | |
File Name | |
URL | |
Description | |
DOI | |
Archive Date | |
Archive Update Frequency |
Location | |
---|---|
File Identifier | |
File Name | |
URL | |
Description | |
DOI | |
Archive Date | |
Archive Update Frequency |
Location | |
---|---|
File Identifier | |
File Name | |
URL | |
Description | |
DOI | |
Archive Date | |
Archive Update Frequency |
URLs
URL | http://www.nrcresearchpress.com/doi/pdf/10.1139/Z09-141 |
---|---|
Name | |
URL Type | Online Resource |
File Resource Format | |
Description |
Huber, H.R., S.J. Jeffries, D.M. Lambourn, and B.R. Dickerson. 2010. Population substructure of harbor seals (Phoca vitulina richardsi) in Washington State using mtDNA. Canadian Journal of Zoology 88:280-288. |
URL | http://www.nrcresearchpress.com/doi/pdf/10.1139/Z09-141 |
---|---|
Name | |
URL Type | Online Resource |
File Resource Format | |
Description |
Huber, H.R., B.R. Dickerson, S.J. Jeffries, and D.M. Lambourn. 2012. Genetic analysis of Washington State harbor seals (Phoca vitulina richardii) using microsatellites. Canadian Journal of Zoology 90:1361-1369. |
URL | |
---|---|
Name | |
URL Type | |
File Resource Format | |
Description |
URL | |
---|---|
Name | |
URL Type | |
File Resource Format | |
Description |
URL | |
---|---|
Name | |
URL Type | |
File Resource Format | |
Description |
Activity Log
Activity Time | |
---|---|
Activity Type | |
Responsible Party | |
Description |
Activity Time | |
---|---|
Activity Type | |
Responsible Party | |
Description |
Activity Time | |
---|---|
Activity Type | |
Responsible Party | |
Description |
Issues
Issue Date | |
---|---|
Author | |
Issue |
Issue Date | |
---|---|
Author | |
Issue |
Issue Date | |
---|---|
Author | |
Issue |
Technical Environment
Description |
MS Excel |
---|
Data Quality
Representativeness | |
---|---|
Accuracy | |
Analytical Accuracy | |
Horizontal Positional Accuracy | |
Vertical Positional Accuracy | |
Quantitation Limits | |
Bias | |
Comparability | |
Completeness Measure | |
Precision | |
Analytical Precision | |
Field Precision | |
Sensitivity | |
Detection Limit | |
Completeness Report | |
Conceptual Consistency | |
» Quality Control Procedures Employed |
Data were proofed for consistency and logic in the field and in the laboratory. |
Data Management
» Have Resources for Management of these Data Been Identified? | No |
---|---|
» Approximate Percentage of Budget for these Data Devoted to Data Management | 0 |
» Do these Data Comply with the Data Access Directive? | No |
» Is Access to the Data Limited Based on an Approved Waiver? | No |
» If Distributor (Data Hosting Service) is Needed, Please Indicate | Yes |
» Approximate Delay Between Data Collection and Dissemination | Unknown |
» If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed |
Data are not automatically processed |
» Actual or Planned Long-Term Data Archive Location | NCEI-MD |
» Approximate Delay Between Data Collection and Archiving | Unknown |
» How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive? |
IT Security and Contingency Plan for the system establishes procedures and applies to the functions, operations, and resources necessary to recover and restore data as hosted in the Western Regional Support Center in Seattle, Washington, following a disruption. |
Lineage
» Lineage Statement |
Capture methods were by beach seine or tangle net or 'run and grab;' methods are described in Jeffries et al. 1993. Genetic samples were acquired using a 6mm skin punch. Samples not collected by MML were collected by Wolf Hollow Wildlife Rehabilitation Center (San Juan Island, WA), Sarvey Wildlife Center (Arlington, WA), Washington Fish and Wildlife Department (Tacoma, WA) necropsies, and Cascadia Research Collective (Olympia, WA) necropsies. Samples were analyzed at Southwest Fisheries Science Center (La Jolla, CA), Northwest Fisheries Science Center (Seattle, WA), and at MERL/AFSC (Seattle, WA). |
---|
Sources
Citation Title | |
---|---|
Contact Role Type | |
Contact Type | |
Contact Name | |
Publish Date | |
Extent Type | |
Extent Start Date/Time | |
Extent End Date/Time | |
Citation URL | |
Citation URL Name | |
Citation URL Description | |
Scale Denominator |
Citation Title | |
---|---|
Contact Role Type | |
Contact Type | |
Contact Name | |
Publish Date | |
Extent Type | |
Extent Start Date/Time | |
Extent End Date/Time | |
Citation URL | |
Citation URL Name | |
Citation URL Description | |
Scale Denominator |
Citation Title | |
---|---|
Contact Role Type | |
Contact Type | |
Contact Name | |
Publish Date | |
Extent Type | |
Extent Start Date/Time | |
Extent End Date/Time | |
Citation URL | |
Citation URL Name | |
Citation URL Description | |
Scale Denominator |
Process Steps
Process Step Number | |
---|---|
» Description | |
Process Date/Time | |
Process Contact | |
Phone (Voice) | |
Email Address | |
Source |
Process Step Number | |
---|---|
» Description | |
Process Date/Time | |
Process Contact | |
Phone (Voice) | |
Email Address | |
Source |
Process Step Number | |
---|---|
» Description | |
Process Date/Time | |
Process Contact | |
Phone (Voice) | |
Email Address | |
Source |
Acquisition Information
Instruments
Instrument Unavailable Reason |
---|
Identifier | |
---|---|
Docucomp UUID | |
Instrument / Gear | |
Instrument Type | |
Description |
Identifier | |
---|---|
Docucomp UUID | |
Instrument / Gear | |
Instrument Type | |
Description |
Identifier | |
---|---|
Docucomp UUID | |
Instrument / Gear | |
Instrument Type | |
Description |
Platforms
Platform Unavailable Reason |
---|
Identifier | |||||||
---|---|---|---|---|---|---|---|
Docucomp UUID | |||||||
Description | |||||||
Mounted Instruments |
|||||||
|
Identifier | |||||||
---|---|---|---|---|---|---|---|
Docucomp UUID | |||||||
Description | |||||||
Mounted Instruments |
|||||||
|
Identifier | |||||||
---|---|---|---|---|---|---|---|
Docucomp UUID | |||||||
Description | |||||||
Mounted Instruments |
|||||||
|
FAQs
Date | |
---|---|
Author | |
Question | |
Answer |
Child Items
Rubric scores updated every 15m
Score | Type | Title |
---|---|---|
Entity (ENT) | Collection Location and Date | |
Related Items
Item Type | Relationship Type | Title |
---|---|---|
Catalog Details
Catalog Item ID | 32188 |
---|---|
Metadata Record Created By | Tony Orr |
Metadata Record Created | 2016-04-08 14:36+0000 |
Metadata Record Last Modified By | SysAdmin InPortAdmin |
» Metadata Record Last Modified | 2024-10-03 18:16+0000 |
Metadata Record Published | 2019-04-15 |
Owner Org | AFSC |
Metadata Publication Status | Published Externally |
Do Not Publish? | N |
Metadata Workflow State | Published / External |
Metadata Last Review Date | 2019-04-15 |
Metadata Review Frequency | 1 Year |
Metadata Next Review Date | 2020-04-15 |
Tags |
---|