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Keywords
Physical Location
Data Set Info
Support Roles
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Access Info
Distribution Info
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Tech Environment
Data Quality
Data Management
Lineage
Child Items
Catalog Details

Summary

Short Citation
Alaska Fisheries Science Center, 2024: AFSC/NMML/CCEP: Sampling locations for harbor seal genetics in Washington and British Columbia, https://www.fisheries.noaa.gov/inport/item/32188.
Full Citation Examples

Abstract

Using skin samples from 777 unweaned pups collected in 9 different regions in WA state and British Columbia (WA Coastal Estuaries, WA North Coast, British Columbia, Boundary Bay, San Juan Islands, Smith/Minor Islands, Dungeness Spit, Hood Canal, South Puget Sound), the California Current Ecosystem Program at the Marine Mammal Laboratory/AFSC tested levels of genetic variation using mtDNA and 9 microsatellite loci. For both mtDNA and microsatellites we found the same four groupings. Previously, harbor seals were managed as two stocks: coastal and Inland waters. The data indicated that the harbor seals should be managed as four stocks: one on the Coast and three stocks in the Inland Waters. An additional 92 skin samples were collected opportunistically from non-pups. They have not yet been analyzed.

Distribution Information

Access Constraints:

There are no legal restrictions on access to the data. They reside in public domain and can be freely distributed.

Use Constraints:

User must read and fully comprehend the metadata prior to use. Applications or inferences derived from the data should be carefully considered for accuracy. Acknowledgement of NOAA/NMFS/AFSC, as the source from which these data were obtained in any publications and/or other representations of these, data is suggested. Data must be cited as: Huber, H.R., B.R. Dickerson, D.M. Lambourn, S.J.Jeffries (2016). Sampling location for harbor seal genetics in Washington and British Columbia from 1993-08-25 to 2009-09-23 (NCEI Accession 0148458). NOAA National Centers for Environmental Information.

Child Items

Type Title
Entity Collection Location and Date

Contact Information

Point of Contact
Harriet Huber
harriet.huber@noaa.gov

Point of Contact
Robert Delong
robert.delong@noaa.gov

Metadata Contact
Tony Orr
tony.orr@noaa.gov

Extents

Geographic Area 1

-127° W, -122° E, 50° N, 46° S

Western Washington State Coast, British Columbia, and Inland waters (i.e. Salish Sea)

Item Identification

Title: AFSC/NMML/CCEP: Sampling locations for harbor seal genetics in Washington and British Columbia
Short Name: AFSC/NMML/CCEP: Sampling locations for harbor seal genetics in Washington and British Columbia
Status: Completed
Abstract:

Using skin samples from 777 unweaned pups collected in 9 different regions in WA state and British Columbia (WA Coastal Estuaries, WA North Coast, British Columbia, Boundary Bay, San Juan Islands, Smith/Minor Islands, Dungeness Spit, Hood Canal, South Puget Sound), the California Current Ecosystem Program at the Marine Mammal Laboratory/AFSC tested levels of genetic variation using mtDNA and 9 microsatellite loci. For both mtDNA and microsatellites we found the same four groupings. Previously, harbor seals were managed as two stocks: coastal and Inland waters. The data indicated that the harbor seals should be managed as four stocks: one on the Coast and three stocks in the Inland Waters. An additional 92 skin samples were collected opportunistically from non-pups. They have not yet been analyzed.

Purpose:

The CCEP of MML collected genetic samples from pups to determine stocks of harbor seals on Washington Coast and Inland Waters. Genetic samples from other age classes were also collected.

Other Citation Details:

Cite data as: Huber, H.R., B.R. Dickerson, D.M. Lambourn, S.J.Jeffries (2016). Sampling location for harbor seal genetics in Washington and British Columbia from 1993-08-25 to 2009-09-23 (NCEI Accession 0148458). NOAA National Centers for Environmental Information.

Keywords

Theme Keywords

Thesaurus Keyword
UNCONTROLLED
None Genetics
None Microsatellite DNA
None Mitochondrial DNA
None Pacific harbor seal
None Phoca vitulina
None Stock Definition

Temporal Keywords

Thesaurus Keyword
UNCONTROLLED
None Pupping season

Spatial Keywords

Thesaurus Keyword
UNCONTROLLED
None British Columbia, Canada
None Washington coast
None Washington Inland Waters

Physical Location

Organization: Alaska Fisheries Science Center
City: Seattle
State/Province: WA
Country: USA

Data Set Information

Data Set Scope Code: Data Set
Data Set Type: CSV Files
Maintenance Frequency: As Needed
Data Presentation Form: Table (digital)
Entity Attribute Overview:

The user is responsible for the results of any application of this data for other than its intended purpose. NOAA denies liability if the data are misused. Applications or inferences derived from the data should be carefully considered for accuracy. Whereas every effort has been made to ensure that these data are accurate and reliable within the limits of the current state of the art, NOAA cannot assume liability for any damages caused by any errors or omissions in the data, nor as a result of the failure of the data to function on a particular system. NOAA makes no warranty, expressed or implied, nor does the fact of distribution constitute such a warranty.

Support Roles

Data Steward

CC ID: 315765
Date Effective From: 2016
Date Effective To:
Contact (Person): Huber, Harriet
Email Address: harriet.huber@noaa.gov

Distributor

CC ID: 321942
Date Effective From: 2016
Date Effective To:
Contact (Organization): National Centers for Environmental Information - Silver Spring, Maryland (NCEI-MD)
Address: NOAA/NESDIS E/OC SSMC3, 4th Floor, 1351 East-West Highway
Silver Spring, MD 20910-3282
Phone: (301) 713-3277

Metadata Contact

CC ID: 315769
Date Effective From: 2016
Date Effective To:
Contact (Person): Orr, Tony
Email Address: tony.orr@noaa.gov

Originator

CC ID: 315768
Date Effective From: 2016
Date Effective To:
Contact (Person): Huber, Harriet
Email Address: harriet.huber@noaa.gov

Point of Contact

CC ID: 315766
Date Effective From: 2016
Date Effective To:
Contact (Person): Huber, Harriet
Email Address: harriet.huber@noaa.gov

Point of Contact

CC ID: 315767
Date Effective From: 2016
Date Effective To:
Contact (Person): Delong, Robert
Email Address: robert.delong@noaa.gov

Extents

Extent Group 1

Extent Group 1 / Geographic Area 1

CC ID: 315771
W° Bound: -127
E° Bound: -122
N° Bound: 50
S° Bound: 46
Description

Western Washington State Coast, British Columbia, and Inland waters (i.e. Salish Sea)

Access Information

Security Class: Unclassified
Security Classification System:

None.

Security Handling Description:

None.

Data Access Policy:

The dataset is archived with the NOAA National Centers for Environmental Information (NCEI). Acknowledgement of NOAA/NMFS/AFSC, as the source from which these data were obtained in any publications and/or other representations of these data is suggested. Communication and collaboration with dataset authors is strongly encouraged prior to use.

Data Access Constraints:

There are no legal restrictions on access to the data. They reside in public domain and can be freely distributed.

Data Use Constraints:

User must read and fully comprehend the metadata prior to use. Applications or inferences derived from the data should be carefully considered for accuracy. Acknowledgement of NOAA/NMFS/AFSC, as the source from which these data were obtained in any publications and/or other representations of these, data is suggested. Data must be cited as: Huber, H.R., B.R. Dickerson, D.M. Lambourn, S.J.Jeffries (2016). Sampling location for harbor seal genetics in Washington and British Columbia from 1993-08-25 to 2009-09-23 (NCEI Accession 0148458). NOAA National Centers for Environmental Information.

Metadata Access Constraints:

None.

Metadata Use Constraints:

Metadata are subject to revision at any time and information within the metadata record should not be cited without author consent. Whereas every effort has been made to ensure that these data are accurate and reliable within the limits of the current state of the art, NOAA cannot assume liability for any damages caused by any errors or omissions in the data, nor as a result of the failure of the data to function on a particular system. NOAA makes no warranty, expressed or implied, nor does the fact of distribution constitute such a warranty.

Distribution Information

Distribution 1

CC ID: 836514
Download URL: https://data.nodc.noaa.gov/cgi-bin/iso?id=gov.noaa.nodc:0148458
Distributor: National Centers for Environmental Information - Silver Spring, Maryland (NCEI-MD) (2016 - Present)
File Name: CCEP Harbor Seal Genetic Location Information.csv
File Type (Deprecated): csv (comma-separated values)
Distribution Format: CSV - Comma Separated Values (Text)

URLs

URL 1

CC ID: 315776
URL: http://www.nrcresearchpress.com/doi/pdf/10.1139/Z09-141
URL Type:
Online Resource
File Resource Format: PDF
Description:

Huber, H.R., S.J. Jeffries, D.M. Lambourn, and B.R. Dickerson. 2010. Population substructure of harbor seals (Phoca vitulina richardsi) in Washington State using mtDNA. Canadian Journal of Zoology 88:280-288.

URL 2

CC ID: 315777
URL: http://www.nrcresearchpress.com/doi/pdf/10.1139/Z09-141
URL Type:
Online Resource
File Resource Format: PDF
Description:

Huber, H.R., B.R. Dickerson, S.J. Jeffries, and D.M. Lambourn. 2012. Genetic analysis of Washington State harbor seals (Phoca vitulina richardii) using microsatellites. Canadian Journal of Zoology 90:1361-1369.

Technical Environment

Description:

MS Excel

Data Quality

Quality Control Procedures Employed:

Data were proofed for consistency and logic in the field and in the laboratory.

Data Management

Have Resources for Management of these Data Been Identified?: No
Approximate Percentage of Budget for these Data Devoted to Data Management: 0
Do these Data Comply with the Data Access Directive?: No
Is Access to the Data Limited Based on an Approved Waiver?: No
If Distributor (Data Hosting Service) is Needed, Please Indicate: Yes
Approximate Delay Between Data Collection and Dissemination: Unknown
If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed:

Data are not automatically processed

Actual or Planned Long-Term Data Archive Location: NCEI-MD
Approximate Delay Between Data Collection and Archiving: Unknown
How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive?:

IT Security and Contingency Plan for the system establishes procedures and applies to the functions, operations, and resources necessary to recover and restore data as hosted in the Western Regional Support Center in Seattle, Washington, following a disruption.

Lineage

Lineage Statement:

Capture methods were by beach seine or tangle net or 'run and grab;' methods are described in Jeffries et al. 1993. Genetic samples were acquired using a 6mm skin punch. Samples not collected by MML were collected by Wolf Hollow Wildlife Rehabilitation Center (San Juan Island, WA), Sarvey Wildlife Center (Arlington, WA), Washington Fish and Wildlife Department (Tacoma, WA) necropsies, and Cascadia Research Collective (Olympia, WA) necropsies. Samples were analyzed at Southwest Fisheries Science Center (La Jolla, CA), Northwest Fisheries Science Center (Seattle, WA), and at MERL/AFSC (Seattle, WA).

Child Items

Rubric scores updated every 15m

Rubric Score Type Title
Entity Collection Location and Date

Catalog Details

Catalog Item ID: 32188
GUID: gov.noaa.nmfs.inport:32188
Metadata Record Created By: Tony Orr
Metadata Record Created: 2016-04-08 14:36+0000
Metadata Record Last Modified By: SysAdmin InPortAdmin
Metadata Record Last Modified: 2023-10-17 16:12+0000
Metadata Record Published: 2019-04-15
Owner Org: AFSC
Metadata Publication Status: Published Externally
Do Not Publish?: N
Metadata Last Review Date: 2019-04-15
Metadata Review Frequency: 1 Year
Metadata Next Review Date: 2020-04-15