AFSC/NMML/CCEP: Sampling locations for harbor seal genetics in Washington and British Columbia
Data Set (DS) | Alaska Fisheries Science Center (AFSC)GUID: gov.noaa.nmfs.inport:32188 | Updated: October 3, 2024 | Published / External
Item Identification
Title: | AFSC/NMML/CCEP: Sampling locations for harbor seal genetics in Washington and British Columbia |
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Short Name: | AFSC/NMML/CCEP: Sampling locations for harbor seal genetics in Washington and British Columbia |
Status: | Completed |
Abstract: |
Using skin samples from 777 unweaned pups collected in 9 different regions in WA state and British Columbia (WA Coastal Estuaries, WA North Coast, British Columbia, Boundary Bay, San Juan Islands, Smith/Minor Islands, Dungeness Spit, Hood Canal, South Puget Sound), the California Current Ecosystem Program at the Marine Mammal Laboratory/AFSC tested levels of genetic variation using mtDNA and 9 microsatellite loci. For both mtDNA and microsatellites we found the same four groupings. Previously, harbor seals were managed as two stocks: coastal and Inland waters. The data indicated that the harbor seals should be managed as four stocks: one on the Coast and three stocks in the Inland Waters. An additional 92 skin samples were collected opportunistically from non-pups. They have not yet been analyzed. |
Purpose: |
The CCEP of MML collected genetic samples from pups to determine stocks of harbor seals on Washington Coast and Inland Waters. Genetic samples from other age classes were also collected. |
Other Citation Details: |
Cite data as: Huber, H.R., B.R. Dickerson, D.M. Lambourn, S.J.Jeffries (2016). Sampling location for harbor seal genetics in Washington and British Columbia from 1993-08-25 to 2009-09-23 (NCEI Accession 0148458). NOAA National Centers for Environmental Information. |
Keywords
Theme Keywords
Thesaurus | Keyword |
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UNCONTROLLED | |
None | Genetics |
None | Microsatellite DNA |
None | Mitochondrial DNA |
None | Pacific harbor seal |
None | Phoca vitulina |
None | Stock Definition |
Temporal Keywords
Thesaurus | Keyword |
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UNCONTROLLED | |
None | Pupping season |
Spatial Keywords
Thesaurus | Keyword |
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UNCONTROLLED | |
None | British Columbia, Canada |
None | Washington coast |
None | Washington Inland Waters |
Physical Location
Organization: | Alaska Fisheries Science Center |
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City: | Seattle |
State/Province: | WA |
Country: | USA |
Data Set Information
Data Set Scope Code: | Data Set |
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Data Set Type: | CSV Files |
Maintenance Frequency: | As Needed |
Data Presentation Form: | Table (digital) |
Entity Attribute Overview: |
The user is responsible for the results of any application of this data for other than its intended purpose. NOAA denies liability if the data are misused. Applications or inferences derived from the data should be carefully considered for accuracy. Whereas every effort has been made to ensure that these data are accurate and reliable within the limits of the current state of the art, NOAA cannot assume liability for any damages caused by any errors or omissions in the data, nor as a result of the failure of the data to function on a particular system. NOAA makes no warranty, expressed or implied, nor does the fact of distribution constitute such a warranty. |
Support Roles
Data Steward
Date Effective From: | 2016 |
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Date Effective To: | |
Contact (Person): | Huber, Harriet |
Email Address: | harriet.huber@noaa.gov |
Distributor
Date Effective From: | 2016 |
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Date Effective To: | |
Contact (Organization): | NOAA National Centers for Environmental Information (NCEI) |
Email Address: | ncei.info@noaa.gov |
URL: | NCEI Contact Information |
Metadata Contact
Date Effective From: | 2016 |
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Date Effective To: | |
Contact (Person): | Orr, Tony |
Email Address: | tony.orr@noaa.gov |
Originator
Date Effective From: | 2016 |
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Date Effective To: | |
Contact (Person): | Huber, Harriet |
Email Address: | harriet.huber@noaa.gov |
Point of Contact
Date Effective From: | 2016 |
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Date Effective To: | |
Contact (Person): | Huber, Harriet |
Email Address: | harriet.huber@noaa.gov |
Point of Contact
Date Effective From: | 2016 |
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Date Effective To: | |
Contact (Person): | Delong, Robert |
Email Address: | robert.delong@noaa.gov |
Extents
Extent Group 1
Extent Group 1 / Geographic Area 1
W° Bound: | -127 | |
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E° Bound: | -122 | |
N° Bound: | 50 | |
S° Bound: | 46 | |
Description |
Western Washington State Coast, British Columbia, and Inland waters (i.e. Salish Sea) |
Access Information
Security Class: | Unclassified |
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Security Classification System: |
None. |
Security Handling Description: |
None. |
Data Access Policy: |
The dataset is archived with the NOAA National Centers for Environmental Information (NCEI). Acknowledgement of NOAA/NMFS/AFSC, as the source from which these data were obtained in any publications and/or other representations of these data is suggested. Communication and collaboration with dataset authors is strongly encouraged prior to use. |
Data Access Constraints: |
There are no legal restrictions on access to the data. They reside in public domain and can be freely distributed. |
Data Use Constraints: |
User must read and fully comprehend the metadata prior to use. Applications or inferences derived from the data should be carefully considered for accuracy. Acknowledgement of NOAA/NMFS/AFSC, as the source from which these data were obtained in any publications and/or other representations of these, data is suggested. Data must be cited as: Huber, H.R., B.R. Dickerson, D.M. Lambourn, S.J.Jeffries (2016). Sampling location for harbor seal genetics in Washington and British Columbia from 1993-08-25 to 2009-09-23 (NCEI Accession 0148458). NOAA National Centers for Environmental Information. |
Metadata Access Constraints: |
None. |
Metadata Use Constraints: |
Metadata are subject to revision at any time and information within the metadata record should not be cited without author consent. Whereas every effort has been made to ensure that these data are accurate and reliable within the limits of the current state of the art, NOAA cannot assume liability for any damages caused by any errors or omissions in the data, nor as a result of the failure of the data to function on a particular system. NOAA makes no warranty, expressed or implied, nor does the fact of distribution constitute such a warranty. |
Distribution Information
Distribution 1
Download URL: | https://data.nodc.noaa.gov/cgi-bin/iso?id=gov.noaa.nodc:0148458 |
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Distributor: | NOAA National Centers for Environmental Information (NCEI) (2016 - Present) |
File Name: | CCEP Harbor Seal Genetic Location Information.csv |
File Type (Deprecated): | csv (comma-separated values) |
Distribution Format: | CSV - Comma Separated Values (Text) |
URLs
URL 1
URL: | http://www.nrcresearchpress.com/doi/pdf/10.1139/Z09-141 |
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URL Type: |
Online Resource
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File Resource Format: | |
Description: |
Huber, H.R., S.J. Jeffries, D.M. Lambourn, and B.R. Dickerson. 2010. Population substructure of harbor seals (Phoca vitulina richardsi) in Washington State using mtDNA. Canadian Journal of Zoology 88:280-288. |
URL 2
URL: | http://www.nrcresearchpress.com/doi/pdf/10.1139/Z09-141 |
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URL Type: |
Online Resource
|
File Resource Format: | |
Description: |
Huber, H.R., B.R. Dickerson, S.J. Jeffries, and D.M. Lambourn. 2012. Genetic analysis of Washington State harbor seals (Phoca vitulina richardii) using microsatellites. Canadian Journal of Zoology 90:1361-1369. |
Technical Environment
Description: |
MS Excel |
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Data Quality
Quality Control Procedures Employed: |
Data were proofed for consistency and logic in the field and in the laboratory. |
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Data Management
Have Resources for Management of these Data Been Identified?: | No |
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Approximate Percentage of Budget for these Data Devoted to Data Management: | 0 |
Do these Data Comply with the Data Access Directive?: | No |
Is Access to the Data Limited Based on an Approved Waiver?: | No |
If Distributor (Data Hosting Service) is Needed, Please Indicate: | Yes |
Approximate Delay Between Data Collection and Dissemination: | Unknown |
If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed: |
Data are not automatically processed |
Actual or Planned Long-Term Data Archive Location: | NCEI-MD |
Approximate Delay Between Data Collection and Archiving: | Unknown |
How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive?: |
IT Security and Contingency Plan for the system establishes procedures and applies to the functions, operations, and resources necessary to recover and restore data as hosted in the Western Regional Support Center in Seattle, Washington, following a disruption. |
Lineage
Lineage Statement: |
Capture methods were by beach seine or tangle net or 'run and grab;' methods are described in Jeffries et al. 1993. Genetic samples were acquired using a 6mm skin punch. Samples not collected by MML were collected by Wolf Hollow Wildlife Rehabilitation Center (San Juan Island, WA), Sarvey Wildlife Center (Arlington, WA), Washington Fish and Wildlife Department (Tacoma, WA) necropsies, and Cascadia Research Collective (Olympia, WA) necropsies. Samples were analyzed at Southwest Fisheries Science Center (La Jolla, CA), Northwest Fisheries Science Center (Seattle, WA), and at MERL/AFSC (Seattle, WA). |
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Catalog Details
Catalog Item ID: | 32188 |
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GUID: | gov.noaa.nmfs.inport:32188 |
Metadata Record Created By: | Tony Orr |
Metadata Record Created: | 2016-04-08 14:36+0000 |
Metadata Record Last Modified By: | SysAdmin InPortAdmin |
Metadata Record Last Modified: | 2024-10-03 18:16+0000 |
Metadata Record Published: | 2019-04-15 |
Owner Org: | AFSC |
Metadata Publication Status: | Published Externally |
Do Not Publish?: | N |
Metadata Last Review Date: | 2019-04-15 |
Metadata Review Frequency: | 1 Year |
Metadata Next Review Date: | 2020-04-15 |