NPRB1019_Fish_Histopath2
National Centers for Coastal Ocean Science
Entity
(ENT)
| ID: 40991
| Published / External
Created: 2017-04-06
|
Last Modified: 2022-08-09
Parent: National Status and Trends: Contaminant body burdens and histopathology of fish and shellfish from Alaska
Data Set (DS) | ID: 38941
Data Set (DS) | ID: 38941
ID: 40991
Entity (ENT)
* Discovery• First Pass
» Metadata Rubric
Item Identification
| * » Title | NPRB1019_Fish_Histopath2 |
|---|---|
| Short Name | NPRB1019_Fish_Histopath2 |
| * Status | Completed |
| Creation Date | |
| Revision Date | |
| • Publication Date | |
| * » Abstract |
tab in NPRB-1019_Data Excel spreadsheet; represents fish sampling data | Description Source: Author |
| * Purpose | |
| Notes |
Converted from FGDC using 'fgdc_to_inport_xml_entity.pl' script. |
| Other Citation Details | |
| • Supplemental Information | |
| DOI (Digital Object Identifier) | |
| DOI Registration Authority | |
| DOI Issue Date |
Keywords
Theme Keywords
| Thesaurus | Keyword |
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Temporal Keywords
| Thesaurus | Keyword |
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* Spatial Keywords
| Thesaurus | Keyword |
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Stratum Keywords
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Instrument Keywords
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Platform Keywords
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Physical Location
| • » Organization | |
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| • » City | |
| • » State/Province | |
| • Country | |
| • » Location Description |
Entity Information
| Entity Type | |
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| Active Version? | |
| Alias | |
| Schema Name | |
| » Description | |
| Change Summary |
Data Attributes
Attribute Summary
| Score | Req'd? | PKey? | » Name | Data Storage Type | Description |
|---|---|---|---|---|---|
| 100 | No | No | Collection Date | NUMBER | Collection Date | Description Source: Author |
| 100 | No | No | Site | VARCHAR | Sampling site | Description Source: Author |
| 100 | No | No | Site Code | VARCHAR | Unique site Code | Description Source: Author |
| 100 | No | No | LatDeg | NUMBER | Latitude of a sampling site | Description Source: Author |
| 100 | No | No | LonDeg | NUMBER | Longitude of sampling site | Description Source: Author |
| 100 | No | No | Species | VARCHAR | Species of fish | Description Source: Author |
| 100 | No | No | Sex | VARCHAR | Sex of a specie | Description Source: Author |
| 100 | No | No | Number of fish analyzed | Unknown | Number of fish analyzed | Description Source: Author |
| 100 | No | No | Fish Length mm | NUMBER | Fish Length mm | Description Source: Author |
| 100 | No | No | Weight in Grams | NUMBER | Weight in Grams | Description Source: Author |
| 100 | No | No | Time Necropsis | NUMBER | Time Necropsis | Description Source: Author |
| 100 | No | No | Gross Lesions | VARCHAR | abnormalities noted by visual examination at gross necropsy in the external or internal appearance | Description Source: Author |
| 100 | No | No | Tissue type | VARCHAR | Fish tissue analyzed | Description Source: Author |
| 100 | No | No | Parameter | VARCHAR | Histopathology parameter (parasite, disease) measured | Description Source: Author |
| 100 | No | No | Data | VARCHAR | Presence or non-occurrence of histopathology parameters | Description Source: Author |
Attribute Details
| Attribute Name | Collection Date |
|---|---|
| Seq. Order | 1 |
| Data Storage Type | NUMBER |
| Max Length | |
| Min Length | |
| Required | No |
| Primary Key | No |
| Precision | |
| Scale | |
| Status | Active |
| Description |
Collection Date | Description Source: Author |
| General Data Type | |
| Unit of Measure | |
| Case Restriction | |
| Display Example | |
| Format Mask | |
| Null Value | |
| Null Value Meaning | |
| Allowed Values | 7/19/10 - 7/21/10 |
| Default Value | |
| Foreign Key Relations | |
| Derivation | |
| Validation Rules |
| Attribute Name | Site |
|---|---|
| Seq. Order | 2 |
| Data Storage Type | VARCHAR |
| Max Length | |
| Min Length | |
| Required | No |
| Primary Key | No |
| Precision | |
| Scale | |
| Status | Active |
| Description |
Sampling site | Description Source: Author |
| General Data Type | |
| Unit of Measure | |
| Case Restriction | |
| Display Example | |
| Format Mask | |
| Null Value | |
| Null Value Meaning | |
| Allowed Values | Nanwalek: Nanwalek | Port Graham: Port Graham | Seldovia: Seldovia | |
| Default Value | |
| Foreign Key Relations | |
| Derivation | |
| Validation Rules |
| Attribute Name | Site Code |
|---|---|
| Seq. Order | 3 |
| Data Storage Type | VARCHAR |
| Max Length | |
| Min Length | |
| Required | No |
| Primary Key | No |
| Precision | |
| Scale | |
| Status | Active |
| Description |
Unique site Code | Description Source: Author |
| General Data Type | |
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| Null Value Meaning | |
| Allowed Values | NHA: Nanwalek | PHGA: Port Graham | SHA: Seldovia | |
| Default Value | |
| Foreign Key Relations | |
| Derivation | |
| Validation Rules |
| Attribute Name | LatDeg |
|---|---|
| Seq. Order | 4 |
| Data Storage Type | NUMBER |
| Max Length | |
| Min Length | |
| Required | No |
| Primary Key | No |
| Precision | |
| Scale | |
| Status | Active |
| Description |
Latitude of a sampling site | Description Source: Author |
| General Data Type | |
| Unit of Measure | |
| Case Restriction | |
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| Null Value Meaning | |
| Allowed Values | 59.351492 - 59.4532 |
| Default Value | |
| Foreign Key Relations | |
| Derivation | |
| Validation Rules |
| Attribute Name | LonDeg |
|---|---|
| Seq. Order | 5 |
| Data Storage Type | NUMBER |
| Max Length | |
| Min Length | |
| Required | No |
| Primary Key | No |
| Precision | |
| Scale | |
| Status | Active |
| Description |
Longitude of sampling site | Description Source: Author |
| General Data Type | |
| Unit of Measure | |
| Case Restriction | |
| Display Example | |
| Format Mask | |
| Null Value | |
| Null Value Meaning | |
| Allowed Values | -151.92089 - -151.5209 |
| Default Value | |
| Foreign Key Relations | |
| Derivation | |
| Validation Rules |
| Attribute Name | Species |
|---|---|
| Seq. Order | 6 |
| Data Storage Type | VARCHAR |
| Max Length | |
| Min Length | |
| Required | No |
| Primary Key | No |
| Precision | |
| Scale | |
| Status | Active |
| Description |
Species of fish | Description Source: Author |
| General Data Type | |
| Unit of Measure | |
| Case Restriction | |
| Display Example | |
| Format Mask | |
| Null Value | |
| Null Value Meaning | |
| Allowed Values | sockeye: sockeye | chum: chum | |
| Default Value | |
| Foreign Key Relations | |
| Derivation | |
| Validation Rules |
| Attribute Name | Sex |
|---|---|
| Seq. Order | 7 |
| Data Storage Type | VARCHAR |
| Max Length | |
| Min Length | |
| Required | No |
| Primary Key | No |
| Precision | |
| Scale | |
| Status | Active |
| Description |
Sex of a specie | Description Source: Author |
| General Data Type | |
| Unit of Measure | |
| Case Restriction | |
| Display Example | |
| Format Mask | |
| Null Value | |
| Null Value Meaning | |
| Allowed Values | male: male | female: female | |
| Default Value | |
| Foreign Key Relations | |
| Derivation | |
| Validation Rules |
| Attribute Name | Number of fish analyzed |
|---|---|
| Seq. Order | 8 |
| Data Storage Type | Unknown |
| Max Length | |
| Min Length | |
| Required | No |
| Primary Key | No |
| Precision | |
| Scale | |
| Status | Active |
| Description |
Number of fish analyzed | Description Source: Author |
| General Data Type | |
| Unit of Measure | |
| Case Restriction | |
| Display Example | |
| Format Mask | |
| Null Value | |
| Null Value Meaning | |
| Allowed Values | Comments of a sampler |
| Default Value | |
| Foreign Key Relations | |
| Derivation | |
| Validation Rules |
| Attribute Name | Fish Length mm |
|---|---|
| Seq. Order | 9 |
| Data Storage Type | NUMBER |
| Max Length | |
| Min Length | |
| Required | No |
| Primary Key | No |
| Precision | |
| Scale | |
| Status | Active |
| Description |
Fish Length mm | Description Source: Author |
| General Data Type | |
| Unit of Measure | |
| Case Restriction | |
| Display Example | |
| Format Mask | |
| Null Value | |
| Null Value Meaning | |
| Allowed Values | 495 - 695 |
| Default Value | |
| Foreign Key Relations | |
| Derivation | |
| Validation Rules |
| Attribute Name | Weight in Grams |
|---|---|
| Seq. Order | 10 |
| Data Storage Type | NUMBER |
| Max Length | |
| Min Length | |
| Required | No |
| Primary Key | No |
| Precision | |
| Scale | |
| Status | Active |
| Description |
Weight in Grams | Description Source: Author |
| General Data Type | |
| Unit of Measure | |
| Case Restriction | |
| Display Example | |
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| Null Value | |
| Null Value Meaning | |
| Allowed Values | 1320 - 4510 |
| Default Value | |
| Foreign Key Relations | |
| Derivation | |
| Validation Rules |
| Attribute Name | Time Necropsis |
|---|---|
| Seq. Order | 11 |
| Data Storage Type | NUMBER |
| Max Length | |
| Min Length | |
| Required | No |
| Primary Key | No |
| Precision | |
| Scale | |
| Status | Active |
| Description |
Time Necropsis | Description Source: Author |
| General Data Type | |
| Unit of Measure | |
| Case Restriction | |
| Display Example | |
| Format Mask | |
| Null Value | |
| Null Value Meaning | |
| Allowed Values | 12:16 AM - 11:45 PM |
| Default Value | |
| Foreign Key Relations | |
| Derivation | |
| Validation Rules |
| Attribute Name | Gross Lesions |
|---|---|
| Seq. Order | 12 |
| Data Storage Type | VARCHAR |
| Max Length | |
| Min Length | |
| Required | No |
| Primary Key | No |
| Precision | |
| Scale | |
| Status | Active |
| Description |
abnormalities noted by visual examination at gross necropsy in the external or internal appearance | Description Source: Author |
| General Data Type | |
| Unit of Measure | |
| Case Restriction | |
| Display Example | |
| Format Mask | |
| Null Value | |
| Null Value Meaning | |
| Allowed Values | no adipose fin clip: Indication of wild fish | paler flesh, small fish: relatively smaller flesh that was pale pink in color | num. peritoneal: numerous peritoneal nematodes | many perit. nematodes: many nematode worms | |
| Default Value | |
| Foreign Key Relations | |
| Derivation | |
| Validation Rules |
| Attribute Name | Tissue type |
|---|---|
| Seq. Order | 13 |
| Data Storage Type | VARCHAR |
| Max Length | |
| Min Length | |
| Required | No |
| Primary Key | No |
| Precision | |
| Scale | |
| Status | Active |
| Description |
Fish tissue analyzed | Description Source: Author |
| General Data Type | |
| Unit of Measure | |
| Case Restriction | |
| Display Example | |
| Format Mask | |
| Null Value | |
| Null Value Meaning | |
| Allowed Values | Gill: Fish gill | Kidney: Fish kidney | Liver: Fish liver | |
| Default Value | |
| Foreign Key Relations | |
| Derivation | |
| Validation Rules |
| Attribute Name | Parameter |
|---|---|
| Seq. Order | 14 |
| Data Storage Type | VARCHAR |
| Max Length | |
| Min Length | |
| Required | No |
| Primary Key | No |
| Precision | |
| Scale | |
| Status | Active |
| Description |
Histopathology parameter (parasite, disease) measured | Description Source: Author |
| General Data Type | |
| Unit of Measure | |
| Case Restriction | |
| Display Example | |
| Format Mask | |
| Null Value | |
| Null Value Meaning | |
| Allowed Values | Gill Loma salmonis (microsporidan): Gill Loma salmonis (microsporidan) | Gill Microaneurysms: Gill Microaneurysms | Gill monogenetic trematodes: Gill monogenetic trematodes | Gill no significant lesions: no significant lesions in the gill | Kidney tubular Myxosporidans: Kidney tubular Myxosporidans | Kidney no significant lesions: No significant lesions in the kidney | Liver no significant lesions: No significant lesions in the liver | Liver Peritoneal Nematodes: Liver Peritoneal Nematodes | |
| Default Value | |
| Foreign Key Relations | |
| Derivation | |
| Validation Rules |
| Attribute Name | Data |
|---|---|
| Seq. Order | 15 |
| Data Storage Type | VARCHAR |
| Max Length | |
| Min Length | |
| Required | No |
| Primary Key | No |
| Precision | |
| Scale | |
| Status | Active |
| Description |
Presence or non-occurrence of histopathology parameters | Description Source: Author |
| General Data Type | |
| Unit of Measure | |
| Case Restriction | |
| Display Example | |
| Format Mask | |
| Null Value | |
| Null Value Meaning | |
| Allowed Values | 1: Parameter observed positively | 0: Parameter observed | |
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Support Roles
» At least one Distributor Org, one Metadata Contact, one Point of Contact, and one Data Steward should be listed.
| * » Support Role | |
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| * » Date Effective From | |
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| * » Contact | |
| * Contact Instructions |
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| * Contact Instructions |
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| * Contact Instructions |
Extents
| Currentness Reference |
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Extent Group 1
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| * » Description |
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Extent Group 1 / Time Frame
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| * » Start | |
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| Alternate Start as of Info | |
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| Description |
Access Information
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| * Security Classification System |
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| Security Handling Description |
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| • Data Access Policy |
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| » Data Access Procedure |
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| • » Data Access Constraints |
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| • Data Use Constraints |
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Distribution Information
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| » Download URL | |
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Activity Log
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Issues
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FAQs
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Child Items
Rubric scores updated every 15m
| Score | Type | Title |
|---|---|---|
Related Items
| Item Type | Relationship Type | Title |
|---|---|---|
Catalog Details
| Catalog Item ID | 40991 |
|---|---|
| Metadata Record Created By | Tyler Christensen |
| Metadata Record Created | 2017-04-06 10:31+0000 |
| Metadata Record Last Modified By | SysAdmin InPortAdmin |
| » Metadata Record Last Modified | 2022-08-09 17:11+0000 |
| Metadata Record Published | 2017-04-07 |
| Owner Org | NCCOS |
| Metadata Publication Status | Published Externally |
| Do Not Publish? | N |
| Metadata Workflow State | Published / External |
| Metadata Last Review Date | 2017-04-07 |
| Metadata Review Frequency | 1 Year |
| Metadata Next Review Date | 2018-04-07 |
| Tags |
|---|