Hawaii Atlantis model input files calibrated for testing CMIP6 climate scenarios
Pacific Islands Fisheries Science Center
Data Set
(DS)
| ID: 72380
| Published / External
Created: 2024-04-03
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Last Modified: 2024-05-01
Project (PRJ) | ID: 72352
ID: 72380
Data Set (DS)
* Discovery• First Pass
» Metadata Rubric
Item Identification
* » Title | Hawaii Atlantis model input files calibrated for testing CMIP6 climate scenarios |
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Short Name | Hawaii Atlantis model input files |
* Status | Completed |
Creation Date | 2024-04-02 |
Revision Date | |
• Publication Date | |
* » Abstract |
The files described here are the Main Hawaiian Islands (MHI) Atlantis Ecosystem model input files used in for testing CMIP6 climate scenarios developed by main Hawaiian Islands ROMS. These input files were used to run forecast simulations under three different CMIP6 climate change scenarios: low-emission (SSP1-2.6), moderate-emission (SSP2-4.5), and high-emission (SSP3-7.0). Files included are parameter (.prm), initial conditions (.nc), and land-based source pollutants (LBSP) forcing files. The parameter files include a run file, biological parameters, forcing parameters (list climate and pollution forcing files), harvest parameters (fishing mortality), and physics parameters. The LBSP forcing files are time series files representing spatial deposition of nutrients and sediments from land to the nearshore regions covered by Hawaii Atlantis. In recalibrating the current model based on updated climate forcing files (ROMS projections), the parameter and initial conditions files have been adjusted since initial model development. The ROMS projections used to force Hawaii Atlantis are not included in this data set, as they are from a different project. Hawaii Atlantis was initially developed at PIFSC and further details regarding the model, as well as outputs of a model run based on older inputs, are hosted as InPort catalog item 55245. The LBSP forcing files hosted here were developed based on Ocean Tipping Points project data as part of initial model development. |
* Purpose |
The purpose of this modeling effort is to address the pressing need for a comprehensive understanding of the ecological and socio-economic impacts of climate change on coral reef ecosystems in Hawaii. Given the compounding challenges faced by these ecosystems (e.g., ocean acidification, rising temperatures, fishing activity, and pollution), there is a need to assess their vulnerability and resilience to inform management. By integrating high-resolution climate scenarios downscaled for the main Hawaiian Islands, species interactions, fishing impacts, and land-based pollution in a spatially-explicit ecosystem model, this modeling effort projects how coral reef ecosystems may evolve over time. Through scenario analyses, the research seeks to identify potential shifts in ecosystem dynamics, such as changes in coral cover and fish assemblages, and assess spatial variations in vulnerability. By providing insights into the impacts of climate change on coral reef ecosystems, this research aims to inform effective management strategies and enhance the resilience of these vital ecosystems in Hawaii. |
Notes |
Created by Lansing Perng 04/02/24. |
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Keywords
Theme Keywords
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Global Change Master Directory (GCMD) Science Keywords | EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > ANTHROPOGENIC/HUMAN INFLUENCED ECOSYSTEMS |
Global Change Master Directory (GCMD) Science Keywords | EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > AQUATIC ECOSYSTEMS |
Global Change Master Directory (GCMD) Science Keywords | EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > MARINE ECOSYSTEMS > COASTAL |
Global Change Master Directory (GCMD) Science Keywords | EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > MARINE ECOSYSTEMS > REEF > CORAL REEF |
Global Change Master Directory (GCMD) Science Keywords | EARTH SCIENCE > OCEANS > COASTAL PROCESSES > CORAL REEFS |
Temporal Keywords
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* Spatial Keywords
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Global Change Master Directory (GCMD) Location Keywords | CONTINENT > NORTH AMERICA > UNITED STATES OF AMERICA > HAWAII |
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Physical Location
• » Organization | Pacific Islands Fisheries Science Center |
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• » City | Honolulu |
• » State/Province | HI |
• Country | USA |
• » Location Description |
IRC |
Data Set Information
* Data Set Scope Code | Data Set |
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• Data Set Type | |
• Maintenance Frequency | None Planned |
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Support Roles
* » Support Role | Data Steward |
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* » Date Effective From | 2024-04 |
Date Effective To | |
Person | Leong, Kirsten M |
Address |
1845 Wasp Blvd. Honolulu, HI 96818 USA |
Email Address | kirsten.leong@noaa.gov |
Phone | (808)725-5398 |
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* » Support Role | Distributor |
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* » Date Effective From | 2024-04 |
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Organization | Pacific Islands Fisheries Science Center (PIFSC) |
Address |
1845 Wasp Blvd. Honolulu, HI 96818 USA |
Email Address | pifsc.info@noaa.gov |
Phone | 808-725-5360 |
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URL | https://www.pifsc.noaa.gov |
Business Hours | 8:00 a.m. - 4:30 p.m. |
Contact Instructions |
* » Support Role | Metadata Contact |
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* » Date Effective From | 2024-04 |
Date Effective To | 2024-04-30 |
Person | Perng, Lansing Y |
Email Address | lansing.perng@noaa.gov |
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* » Support Role | Metadata Contact |
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* » Date Effective From | 2005-01-20 |
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Person | Leong, Kirsten M |
Address |
1845 Wasp Blvd. Honolulu, HI 96818 USA |
Email Address | kirsten.leong@noaa.gov |
Phone | (808)725-5398 |
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* » Support Role | Point of Contact |
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* » Date Effective From | 2024-05-01 |
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Person | Leong, Kirsten M |
Address |
1845 Wasp Blvd. Honolulu, HI 96818 USA |
Email Address | kirsten.leong@noaa.gov |
Phone | (808)725-5398 |
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* » Support Role | Point of Contact |
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* » Date Effective From | 2024-04 |
Date Effective To | 2024-04-30 |
Person | Perng, Lansing Y |
Email Address | lansing.perng@noaa.gov |
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Extents
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Extent Group 1
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Extent Group 1 / Geographic Area 1
* » W° Bound | -160.5 |
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* » E° Bound | -154.806 |
* » N° Bound | 23.185 |
* » S° Bound | 18.919 |
* » Description |
Main Hawaiian Islands (MHI), including Hawaii, Kahoolawe, Kauai, Maui, Oahu, Molokai, Niihau, and Lanai. |
Extent Group 1 / Vertical Extent 1
EPSG Code | EPSG:32604 |
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Vertical Minimum | -400.0 |
Vertical Maximum | 0.0 |
Extent Group 1 / Time Frame 1
* » Time Frame Type | Range |
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* » Start | 2020-01-01 |
End | 2020-12-31 |
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Access Information
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* » Security Class | Unclassified |
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Not Applicable |
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Distribution Information
Start Date | 2024-04-30 |
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End Date | Present |
» Download URL | https://oceanwatch.pifsc.noaa.gov/xfer/PIFSC_PIRO_bulk_data_download_InPort_72380.tgz |
Distributor | Pacific Islands Fisheries Science Center (PIFSC) (2024-04 - Present) |
File Name | Hawaii Atlantis input files |
Description |
Hawaii Atlantis parameter files and initial conditions file |
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Distribution Format | Not Applicable |
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URLs
URL | https://research.csiro.au/atlantis/ |
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Name | Atlantis, an ecosystem model |
URL Type | Online Resource |
File Resource Format | HTML |
Description |
Home page for Atlantis |
URL | https://repository.library.noaa.gov/view/noaa/14439 |
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Name | Hawaii Atlantis Ecosystem Model Planning Workshop |
URL Type | Online Resource |
File Resource Format | HTML |
Description |
Report of the Hawaii Atlantis Ecosystem Model Planning Workshop held in January 2017 in Honolulu |
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Technical Environment
Description |
Model input data including initial biomass conditions and land-based sources of pollution. Model platform used was the Atlantis model version 6645. |
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Data Quality
Representativeness |
The initial conditions of the model are based on biological data from 2010-2015. The oceanographic data comes from a HYCOM model developed for Hawaii by Dr. Yanli Jia at the International Pacific Research Center, University of Hawaiâi at MÄnoa . Model output years were the non-particular years 2010-2013. |
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Accuracy |
The biomass, distribution and size class data of reef fish and invertebrates comes from intensive visual surveys conducted by PIFSC, these are all day time surveys. Little is known about the distribution and abundance of species other than commercial important bottomfish in depths > 30 m. These data are based on a peer reviewed publication (Weijerman et al 2018). |
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Completeness Report |
The input parameter files are user defined flags related to model customization. The LBSP files represent current (2010â2015) sediment and nutrient inputs into coastal waters. To get seasonal patterns we downloaded monthly climatological rainfall data (1981â2010) from 75 coastal stations in the inhabited Hawaiian Islands11 and took the mean rainfall for each Atlantis box. |
Conceptual Consistency | |
» Quality Control Procedures Employed |
Sensitivity analysis and model skill assessments have been performed. These showed that the model is sensitive to plankton and shark biomass. |
Data Management
» Have Resources for Management of these Data Been Identified? | Yes |
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» Approximate Percentage of Budget for these Data Devoted to Data Management | Unknown |
» Do these Data Comply with the Data Access Directive? | Yes |
» Is Access to the Data Limited Based on an Approved Waiver? | No |
» If Distributor (Data Hosting Service) is Needed, Please Indicate | |
» Approximate Delay Between Data Collection and Dissemination | |
» If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed | |
» Actual or Planned Long-Term Data Archive Location | |
» If World Data Center or Other, Specify | |
» If To Be Determined, Unable to Archive, or No Archiving Intended, Explain | |
» Approximate Delay Between Data Collection and Archiving | |
» How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive? |
PIFSC ITS performs scheduled backups |
Lineage
» Lineage Statement |
The Atlantis Ecosystem Model framework (developed by CSIRO: http://atlantis.cmar.csiro.au/) was used as the model platform. |
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Sources
Citation Title | InPort Item 55245: Management-Strategy Evaluation of the Main Hawaiian Islands with the Atlantis Ecosystem Model: hind-cast simulations and ecosystem forecasting under climate scenarios |
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Contact Role Type | Originator |
Contact Type | Person |
Contact Name | Mariska Weijerman |
Publish Date | 2020-10-25 |
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Citation URL | https://www.fisheries.noaa.gov/inport/item/55245 |
Citation URL Name | Management-Strategy Evaluation of the Main Hawaiian Islands with the Atlantis Ecosystem Model: hind-cast simulations and ecosystem forecasting under climate scenarios |
Citation URL Description |
InPort item describing development of Hawaii Atlantis |
Source Contribution |
Hawaii Atlantis model parameter, initial conditions, and LBSP files developed according to lineage stated in this related InPort item. |
Citation Title | Weijerman, M. 2020. Development of an Atlantis model for Hawaii to support ecosystem-based management. U.S. Dept. of Commerce. NOAA Technical Memorandum NOAA-TM-NMFS-PIFSC-113 doi.org/10.25923/cwqb-1z04 |
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Contact Role Type | Originator |
Contact Type | Person |
Contact Name | Mariska Weijerman |
Publish Date | 2020-12-15 |
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Citation URL | https://repository.library.noaa.gov/view/noaa/28916/noaa_28916_DS1.pdf |
Citation URL Name | NOAA repository |
Citation URL Description |
NOAA Technical Memorandum describing the development of Hawaii Atlantis |
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Process Steps
Process Step Number | 1 |
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» Description |
All process steps are detailed in a Technical Memorandum: Weijerman, M. 2020. Development of an Atlantis model for Hawaiûi to support ecosystem-based management. U.S. Dept. of Commerce. NOAA Technical Memorandum NOAA-TM-NMFS-PIFSC-##, 137 p. doi:10.7289/V5/TM-PIFSC-##. |
Process Date/Time | |
Process Contact | Leong, Kirsten M |
Phone (Voice) | (808)725-5398 |
Email Address | kirsten.leong@noaa.gov |
Source | Weijerman, M. 2020. Development of an Atlantis model for Hawaii to support ecosystem-based management. U.S. Dept. of Commerce. NOAA Technical Memorandum NOAA-TM-NMFS-PIFSC-113 doi.org/10.25923/cwqb-1z04 |
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Acquisition Information
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FAQs
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Related Items
Item Type | Relationship Type | Title |
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Data Set (DS) | Cross Reference |
Management-Strategy Evaluation of the Main Hawaiian Islands with the Atlantis Ecosystem Model: hind-cast simulations and ecosystem forecasting under climate scenarios Original Hawaii Atlantis model outputs and description of development of parameter files. |
Catalog Details
Catalog Item ID | 72380 |
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Metadata Record Created By | Lansing Y Perng |
Metadata Record Created | 2024-04-03 00:35+0000 |
Metadata Record Last Modified By | Brent M Miyamoto |
» Metadata Record Last Modified | 2024-05-01 18:26+0000 |
Metadata Record Published | 2024-05-01 |
Owner Org | PIFSC |
Metadata Publication Status | Published Externally |
Do Not Publish? | N |
Metadata Workflow State | Published / External |
Metadata Last Review Date | 2024-04-12 |
Metadata Review Frequency | 1 Year |
Metadata Next Review Date | 2025-04-12 |
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