Fertilization compatibility of spawning corals NCEI Accession 0160349
Southeast Fisheries Science Center
Data Set
(DS)
| ID: 30704
| Published / External
Created: 2016-02-11
|
Last Modified: 2024-10-03
Project (PRJ) | ID: 35876
ID: 30704
Data Set (DS)
* Discovery• First Pass
» Metadata Rubric
Item Identification
* » Title | Fertilization compatibility of spawning corals NCEI Accession 0160349 |
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Short Name | |
* Status | Completed |
Creation Date | 2014 |
Revision Date | |
• Publication Date | |
* » Abstract |
This data set includes experimental results of fertilization assays to characterize genetic compatibility between individual parental genotypes. Targeted species include Acropora palmata and Orbicella faveolata. Microsatellite multi-locus genotypes for the O.faveolata parental population are included. |
* Purpose |
To characterize fertilization compatibility of potenital parents in imperiled coral populations |
Notes | |
Other Citation Details |
Cite as: Miller, W. Margaret (2017). Fertilization compatibility of spawning corals in the Upper Florida Keys from 2014 to 2015 (NCEI Accession 0160349). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0160349. Accessed [date] |
• Supplemental Information | |
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DOI Registration Authority | |
DOI Issue Date |
Keywords
Theme Keywords
Thesaurus | Keyword |
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Global Change Master Directory (GCMD) Data Center Keywords | DOC/NOAA/NESDIS/NCEI > National Centers for Environmental Information, NESDIS, NOAA, U.S. Department of Commerce |
Global Change Master Directory (GCMD) Data Center Keywords | DOC/NOAA/NESDIS/NODC > National Oceanographic Data Center, NESDIS, NOAA, U.S. Department of Commerce |
Global Change Master Directory (GCMD) Data Center Keywords | DOC/NOAA/NMFS/SEFSC > Southeast Fisheries Science Center, National Marine Fisheries Service, NOAA, U.S. Department of Commerce |
Global Change Master Directory (GCMD) Science Keywords | EARTH SCIENCE > BIOLOGICAL CLASSIFICATION |
Global Change Master Directory (GCMD) Science Keywords | EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > MARINE ECOSYSTEMS > REEF > CORAL REEF |
World Register of Marine Species (WoRMS) | Acropora palmata |
World Register of Marine Species (WoRMS) | Orbicella faveolata |
CoRIS Discovery | Genetic Data Sets > Genotyping |
CoRIS Discovery | Numeric Data Sets > Biology |
CoRIS Theme | EARTH SCIENCE > Biosphere > Zoology > Corals > ESA Listed Species |
CoRIS Theme | EARTH SCIENCE > Biosphere > Zoology > Corals > Reproduction > Sexual Reproduction |
CRCP Project | 797, 30058 |
CRCP Project | Gamete/larval fitness of ESA-listed and candidate corals |
NCEI ACCESSION NUMBER | 0160349 |
NCEI ACCESSION NUMBER | 160349 |
NODC COLLECTING INSTITUTION NAMES | US DOC; NOAA; NMFS; Southeast Fisheries Science Center; Miami, FL Laboratory |
NODC DATA TYPES | BIOLOGICAL DATA |
NODC DATA TYPES | CORAL |
NODC DATA TYPES | CORAL - CENSUS |
NODC SUBMITTING INSTITUTION NAMES | DOC; NOAA; NMFS; Southeast Fisheries Science Center; Miami, FL Laboratory |
None | fertilization |
None | larval competence/settlement |
Temporal Keywords
Thesaurus | Keyword |
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None | 2014-2015 |
* Spatial Keywords
Thesaurus | Keyword |
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Global Change Master Directory (GCMD) Location Keywords | OCEAN > ATLANTIC OCEAN > NORTH ATLANTIC OCEAN |
CoRIS Place | COUNTRY/TERRITORY > United States of America > Florida > Upper Florida Keys (24N080W0018) |
CoRIS Place | OCEAN BASIN > Atlantic Ocean > North Atlantic Ocean > Florida Reef Tract > Upper Florida Keys > Upper Florida Keys(24N080W0018) |
Stratum Keywords
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Instrument Keywords
Thesaurus | Keyword |
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NODC INSTRUMENT TYPES | laboratory analysis |
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Physical Location
• » Organization | National Centers for Environmental Information - Silver Spring, Maryland |
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• » City | Silver Spring |
• » State/Province | MD |
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NCEI Archive |
Data Set Information
* Data Set Scope Code | Data Set |
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• Data Set Type | |
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» Data Presentation Form | Table (digital) |
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Support Roles
* » Support Role | Data Steward |
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* » Date Effective From | 2017 |
Date Effective To | |
Person | Williams, Dana E |
Address |
75 Virginia Beach Drive Miami, FL 33149 Unites States |
Email Address | dana.williams@noaa.gov |
Phone | 305-767-3262 |
Fax | |
Mobile | |
URL | https://www.researchgate.net/profile/Dana_Williams3 |
Business Hours | |
Contact Instructions |
* » Support Role | Data Steward |
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* » Date Effective From | 2014 |
Date Effective To | 2017-04 |
Person | Miller, Margaret W |
Email Address | m.miller.@secore.org |
Phone | |
Fax | |
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URL | |
Business Hours | |
Contact Instructions |
* » Support Role | Distributor |
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* » Date Effective From | 2017 |
Date Effective To | |
Organization | NOAA National Centers for Environmental Information (NCEI) |
Email Address | ncei.info@noaa.gov |
Phone | |
Fax | |
Mobile | |
URL | https://www.ncei.noaa.gov/contact |
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Contact Instructions |
Contact by email preferred. |
* » Support Role | Metadata Contact |
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* » Date Effective From | 2017 |
Date Effective To | |
Person | Williams, Dana E |
Address |
75 Virginia Beach Drive Miami, FL 33149 Unites States |
Email Address | dana.williams@noaa.gov |
Phone | 305-767-3262 |
Fax | |
Mobile | |
URL | https://www.researchgate.net/profile/Dana_Williams3 |
Business Hours | |
Contact Instructions |
* » Support Role | Metadata Contact |
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* » Date Effective From | 2014 |
Date Effective To | 2017-04 |
Person | Miller, Margaret W |
Email Address | m.miller.@secore.org |
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URL | |
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Contact Instructions |
* » Support Role | Point of Contact |
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* » Date Effective From | 2014 |
Date Effective To | 2017-04 |
Person | Miller, Margaret W |
Email Address | m.miller.@secore.org |
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Extents
Currentness Reference | Ground Condition |
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Extent Group 1
Extent Description |
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Extent Group 1 / Geographic Area 1
* » W° Bound | -80.37472222222 |
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* » E° Bound | -80.25738888889 |
* » N° Bound | 25.14519444444 |
* » S° Bound | 25.00911111111 |
* » Description |
Atlantic Ocean, U.S. South |
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* » Time Frame Type | Range |
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* » Start | 2014 |
End | 2015-12 |
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Access Information
Data License | |
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Data License Statement | |
* » Security Class | Unclassified |
* Security Classification System | |
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• Data Access Policy | |
» Data Access Procedure |
Access from supplied url |
• » Data Access Constraints |
None |
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Distribution Information
Start Date | 2017 |
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End Date | Present |
» Download URL | http://accession.nodc.noaa.gov/0160349 |
Distributor | NOAA National Centers for Environmental Information (NCEI) (2017 - Present) |
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ONLINE RESOURCE |
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File Type (Deprecated) | Compressed Archive |
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Compression | Uncompressed |
Review Status | Not Chked |
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URLs
URL | https://www.ncei.noaa.gov/archive/accession/0160349 |
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Name | Landing Page NCEI Accession 0160349 |
URL Type | |
File Resource Format | |
Description |
Miller, W. Margaret (2017). Fertilization compatibility of spawning corals in the Upper Florida Keys from 2014 to 2015 (NCEI Accession 0160349). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0160349 |
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Conceptual Consistency | |
» Quality Control Procedures Employed |
This project/data set involves a set of experiments. Data is checked for consistency after being entered into Excel. |
Data Management
» Have Resources for Management of these Data Been Identified? | No |
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» Approximate Percentage of Budget for these Data Devoted to Data Management | 0 |
» Do these Data Comply with the Data Access Directive? | Yes |
» Is Access to the Data Limited Based on an Approved Waiver? | No |
» If Distributor (Data Hosting Service) is Needed, Please Indicate | No |
» Approximate Delay Between Data Collection and Dissemination | 365 |
» If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed |
N/A |
» Actual or Planned Long-Term Data Archive Location | NCEI-MS |
» Approximate Delay Between Data Collection and Archiving | 365 |
» How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive? |
The data resides on a secure government network requiring multi-factor authentication for network access. |
Lineage
» Lineage Statement |
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Sources
Citation Title | Williams, Dana E.; Miller, Margaret W. (2016). Elkhorn coral demographic monitoring from 2004-03-30 to 2015-10-09 (NCEI Accession 0142175) |
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Contact Role Type | |
Contact Type | Person |
Contact Name | Miller, Margaret W |
Publish Date | |
Extent Type | |
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Citation URL | https://data.nodc.noaa.gov/cgi-bin/iso?id=gov.noaa.nodc:0142175 |
Citation URL Name | |
Citation URL Description | |
Source Contribution |
Citation Title | Baums IB, Hughes CR, and Hellberg M. 2005. Mendelian microsatellite loci for the Caribbean hard coral Acropora palmata. Marine Ecology Progress Series 288:115-127. |
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Publish Date | 2005-03-10 |
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Citation URL | https://www.researchgate.net/publication/250218282_Baums_IB_Hughes_CR_Hellberg_ME_Mendelian_microsatellite_loci_for_the_Caribbean_coral_Acropora_palmata_Mar_Ecol_Prog_Ser_28_115-127 |
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Source Contribution |
Citation Title | Foster NL, Baums IB, Mumby PJ (2007) Sexual vs. asexual reproduction in an ecosystem entineer: the massive coral Montastraea annularis. J Anim Ecol 76:384-391 |
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Publish Date | 2007-01-15 |
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Citation URL | http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2656.2006.01207.x/full |
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Source Contribution |
Citation Title | Severance EG, Szmant AM A, Karl S (2004) Microsatellite loci isolated from the Caribbean coral, Montastraea annularis. Mol Ecol Notes 4:74-76 |
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Publish Date | 2004-01-06 |
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Citation URL | http://onlinelibrary.wiley.com/doi/10.1046/j.1471-8286.2003.00573.x/epdf |
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Process Steps
Process Step Number | 1 |
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» Description |
Pairwise fertilization assays performed by combining proportional amounts gamete bundles (containing both eggs and sperm) from 2 parental colonies in replicated glass vials |
Process Date/Time | |
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Process Step Number | 2 |
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» Description |
Three replicates listed for each cross Samples fixed in formalin-based fixative after ~ 6 hr and scored under a microscope at a later time % fertilization = # cleaving embryos/(#cleaving embryos + # unfertilized eggs) |
Process Date/Time | |
Process Contact | Miller, Margaret W |
Phone (Voice) | |
Email Address | m.miller.@secore.org |
Source |
Process Step Number | 3 |
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» Description |
Also includes the multi-locus genotypes identifying individuals in the the parental population for O.faveolata Multilocus genotypes based on microsattelite markers as described in Baums IB, Hughes CR, and Hellberg M. 2005. Mendelian microsatellite loci for the Caribbean hard coral Acropora palmata. Marine Ecology Progress Series 288:115-127. Severance EG, Szmant AM A, Karl S (2004) Microsatellite loci isolated from the Caribbean coral, Montastraea annularis. Mol Ecol Notes 4:74-76 as modified by: Foster NL, Baums IB, Mumby PJ (2007) Sexual vs. asexual reproduction in an ecosystem entineer: the massive coral Montastraea annularis. J Anim Ecol 76:384-391 |
Process Date/Time | |
Process Contact | Miller, Margaret W |
Phone (Voice) | |
Email Address | m.miller.@secore.org |
Source |
Process Step Number | 4 |
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» Description |
Multilocus genotypes for A.palmata available under NCEI Accession Number 0142175 |
Process Date/Time | |
Process Contact | Miller, Margaret W |
Phone (Voice) | |
Email Address | m.miller.@secore.org |
Source | Williams, Dana E.; Miller, Margaret W. (2016). Elkhorn coral demographic monitoring from 2004-03-30 to 2015-10-09 (NCEI Accession 0142175) |
Process Step Number | 7 |
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» Description |
Data are recorded directly into a lab notebook and then entered into Excel spreadsheets. |
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Acquisition Information
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FAQs
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Child Items
Rubric scores updated every 15m
Score | Type | Title |
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Entity (ENT) | Data_Table_FertAssays | |
Entity (ENT) | Data_Table_GameteBundles | |
Entity (ENT) | Data_Table_OfavGenotypes | |
Document (DOC) | Dataset Metadata | |
Entity (ENT) | FertAssays Table MetaData | |
Entity (ENT) | GameteBundles Table MetaData | |
Entity (ENT) | OfavGenotypes Table MetaData | |
Related Items
Item Type | Relationship Type | Title |
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Catalog Details
Catalog Item ID | 30704 |
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Metadata Record Created By | Carlos Rivero |
Metadata Record Created | 2016-02-11 06:54+0000 |
Metadata Record Last Modified By | SysAdmin InPortAdmin |
» Metadata Record Last Modified | 2024-10-03 18:16+0000 |
Metadata Record Published | 2022-04-27 |
Owner Org | SEFSC |
Metadata Publication Status | Published Externally |
Do Not Publish? | N |
Metadata Workflow State | Published / External |
Metadata Last Review Date | 2022-04-27 |
Metadata Review Frequency | 1 Year |
Metadata Next Review Date | 2023-04-27 |
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