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SEFSC Metadata Library > POPULATION & ECOSYSTEMS MONITORING DIV > Other Protected Resources Projects > CRCP-Gamete/larval fitness of reef-building cor... >

Fertilization compatibility of spawning corals NCEI Accession 0160349

Data Set (DS)  |  Southeast Fisheries Science Center (SEFSC)
GUID: gov.noaa.nmfs.inport:30704  |  Updated: August 15, 2023  |  Published / External 
Summary
Item Identification
Keywords
Physical Location
Data Set Info
Support Roles
Extents
Access Info
Distribution Info
Data Quality
Data Management
Lineage
Child Items
Catalog Details

Summary

Short Citation
Southeast Fisheries Science Center, 2024: Fertilization compatibility of spawning corals NCEI Accession 0160349, https://www.fisheries.noaa.gov/inport/item/30704.
Full Citation Examples

Abstract

This data set includes experimental results of fertilization assays to characterize genetic compatibility between individual parental genotypes. Targeted species include Acropora palmata and Orbicella faveolata. Microsatellite multi-locus genotypes for the O.faveolata parental population are included.

Distribution Information

Access Constraints:

None

Controlled Theme Keywords

Acropora palmata, BIOLOGICAL CLASSIFICATION, CORAL REEF, DOC/NOAA/NESDIS/NCEI, DOC/NOAA/NESDIS/NODC, DOC/NOAA/NMFS/SEFSC, Orbicella faveolata

Child Items

Type Title
Entity Data_Table_FertAssays
Entity Data_Table_GameteBundles
Entity Data_Table_OfavGenotypes
Document Dataset Metadata
Entity FertAssays Table MetaData
Entity GameteBundles Table MetaData
Entity OfavGenotypes Table MetaData

Contact Information

Metadata Contact
Dana E Williams
dana.williams@noaa.gov
305-767-3262

Extents

Geographic Area 1

-80.37472222222° W, -80.25738888889° E, 25.14519444444° N, 25.00911111111° S

Atlantic Ocean, U.S. South

Time Frame 1
2014 - 2015-12

Item Identification

Title: Fertilization compatibility of spawning corals NCEI Accession 0160349
Status: Completed
Creation Date: 2014
Abstract:

This data set includes experimental results of fertilization assays to characterize genetic compatibility between individual parental genotypes. Targeted species include Acropora palmata and Orbicella faveolata. Microsatellite multi-locus genotypes for the O.faveolata parental population are included.
Purpose:

To characterize fertilization compatibility of potenital parents in imperiled coral populations
Other Citation Details:

Cite as: Miller, W. Margaret (2017). Fertilization compatibility of spawning corals in the Upper Florida Keys from 2014 to 2015 (NCEI Accession 0160349). [indicate subset used]. NOAA National Centers for Environmental Information. Dataset. https://www.ncei.noaa.gov/archive/accession/0160349. Accessed [date]

Keywords

Theme Keywords

Thesaurus Keyword
Global Change Master Directory (GCMD) Data Center Keywords
DOC/NOAA/NESDIS/NCEI > National Centers for Environmental Information, NESDIS, NOAA, U.S. Department of Commerce
Global Change Master Directory (GCMD) Data Center Keywords
DOC/NOAA/NESDIS/NODC > National Oceanographic Data Center, NESDIS, NOAA, U.S. Department of Commerce
Global Change Master Directory (GCMD) Data Center Keywords
DOC/NOAA/NMFS/SEFSC > Southeast Fisheries Science Center, National Marine Fisheries Service, NOAA, U.S. Department of Commerce
Global Change Master Directory (GCMD) Science Keywords
EARTH SCIENCE > BIOLOGICAL CLASSIFICATION
Global Change Master Directory (GCMD) Science Keywords
EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > MARINE ECOSYSTEMS > REEF > CORAL REEF
World Register of Marine Species (WoRMS)
Acropora palmata View WoRMS Aphia Record
World Register of Marine Species (WoRMS)
Orbicella faveolata View WoRMS Aphia Record
UNCONTROLLED
CoRIS Discovery Genetic Data Sets > Genotyping
CoRIS Discovery Numeric Data Sets > Biology
CoRIS Theme EARTH SCIENCE > Biosphere > Zoology > Corals > ESA Listed Species
CoRIS Theme EARTH SCIENCE > Biosphere > Zoology > Corals > Reproduction > Sexual Reproduction
CRCP Project 797, 30058
CRCP Project Gamete/larval fitness of ESA-listed and candidate corals
NCEI ACCESSION NUMBER 0160349
NCEI ACCESSION NUMBER 160349
NODC COLLECTING INSTITUTION NAMES US DOC; NOAA; NMFS; Southeast Fisheries Science Center; Miami, FL Laboratory
NODC DATA TYPES BIOLOGICAL DATA
NODC DATA TYPES CORAL
NODC DATA TYPES CORAL - CENSUS
NODC SUBMITTING INSTITUTION NAMES DOC; NOAA; NMFS; Southeast Fisheries Science Center; Miami, FL Laboratory
None fertilization
None larval competence/settlement

Temporal Keywords

Thesaurus Keyword
UNCONTROLLED
None 2014-2015

Spatial Keywords

Thesaurus Keyword
Global Change Master Directory (GCMD) Location Keywords
OCEAN > ATLANTIC OCEAN > NORTH ATLANTIC OCEAN
UNCONTROLLED
CoRIS Place COUNTRY/TERRITORY > United States of America > Florida > Upper Florida Keys (24N080W0018)
CoRIS Place OCEAN BASIN > Atlantic Ocean > North Atlantic Ocean > Florida Reef Tract > Upper Florida Keys > Upper Florida Keys(24N080W0018)

Instrument Keywords

Thesaurus Keyword
UNCONTROLLED
NODC INSTRUMENT TYPES laboratory analysis

Physical Location

Organization: National Centers for Environmental Information - Silver Spring, Maryland
City: Silver Spring
State/Province: MD
Location Description:

NCEI Archive

Data Set Information

Data Set Scope Code: Data Set
Data Presentation Form: Table (digital)

Support Roles

Data Steward

CC ID: 859910
Date Effective From: 2017
Date Effective To:
Contact (Person): Williams, Dana E
Address: 75 Virginia Beach Drive
Miami, FL 33149
Unites States
Email Address: dana.williams@noaa.gov
Phone: 305-767-3262
URL: https://www.researchgate.net/profile/Dana_Williams3

Distributor

CC ID: 281817
Date Effective From: 2017
Date Effective To:
Contact (Organization): National Centers for Environmental Information - Silver Spring, Maryland (NCEI-MD)
Address: NOAA/NESDIS E/OC SSMC3, 4th Floor, 1351 East-West Highway
Silver Spring, MD 20910-3282
Phone: (301) 713-3277
Contact Instructions:

Contact by email preferred.

Metadata Contact

CC ID: 859913
Date Effective From: 2017
Date Effective To:
Contact (Person): Williams, Dana E
Address: 75 Virginia Beach Drive
Miami, FL 33149
Unites States
Email Address: dana.williams@noaa.gov
Phone: 305-767-3262
URL: https://www.researchgate.net/profile/Dana_Williams3
View Historical Support Roles

Extents

Currentness Reference: Ground Condition

Extent Group 1

Extent Group 1 / Geographic Area 1

CC ID: 276990
W° Bound: -80.37472222222
E° Bound: -80.25738888889
N° Bound: 25.14519444444
S° Bound: 25.00911111111
Description

Atlantic Ocean, U.S. South

Extent Group 1 / Time Frame 1

CC ID: 276989
Time Frame Type: Range
Start: 2014
End: 2015-12

Access Information

Security Class: Unclassified
Data Access Procedure:

Access from supplied url
Data Access Constraints:

None

Distribution Information

Distribution 1

CC ID: 281824
Start Date: 2017
End Date: Present
Download URL: http://accession.nodc.noaa.gov/0160349
Distributor: National Centers for Environmental Information - Silver Spring, Maryland (NCEI-MD) (2017 - Present)
Description:

ONLINE RESOURCE
File Type (Deprecated): Compressed Archive
Compression: Uncompressed
Review Status: Not Chked

Data Quality

Quality Control Procedures Employed:

This project/data set involves a set of experiments. Data is checked for consistency after being entered into Excel.

Data Management

Have Resources for Management of these Data Been Identified?: No
Approximate Percentage of Budget for these Data Devoted to Data Management: 0
Do these Data Comply with the Data Access Directive?: Yes
Is Access to the Data Limited Based on an Approved Waiver?: No
If Distributor (Data Hosting Service) is Needed, Please Indicate: No
Approximate Delay Between Data Collection and Dissemination: 365
If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed:

N/A
Actual or Planned Long-Term Data Archive Location: NCEI-MS
Approximate Delay Between Data Collection and Archiving: 365
How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive?:

The data resides on a secure government network requiring multi-factor authentication for network access.

Lineage

Sources

Williams, Dana E.; Miller, Margaret W. (2016). Elkhorn coral demographic monitoring from 2004-03-30 to 2015-10-09 (NCEI Accession 0142175)

CC ID: 379863
Contact Type: Person
Contact Name: Miller, Margaret W
Citation URL: https://data.nodc.noaa.gov/cgi-bin/iso?id=gov.noaa.nodc:0142175

Baums IB, Hughes CR, and Hellberg M. 2005. Mendelian microsatellite loci for the Caribbean hard coral Acropora palmata. Marine Ecology Progress Series 288:115-127.

CC ID: 379855
Publish Date: 2005-03-10
Citation URL: https://www.researchgate.net/publication/250218282_Baums_IB_Hughes_CR_Hellberg_ME_Mendelian_microsatellite_loci_for_the_Caribbean_coral_Acropora_palmata_Mar_Ecol_Prog_Ser_28_115-127

Foster NL, Baums IB, Mumby PJ (2007) Sexual vs. asexual reproduction in an ecosystem entineer: the massive coral Montastraea annularis. J Anim Ecol 76:384-391

CC ID: 379857
Publish Date: 2007-01-15
Citation URL: http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2656.2006.01207.x/full

Severance EG, Szmant AM A, Karl S (2004) Microsatellite loci isolated from the Caribbean coral, Montastraea annularis. Mol Ecol Notes 4:74-76

CC ID: 379856
Publish Date: 2004-01-06
Citation URL: http://onlinelibrary.wiley.com/doi/10.1046/j.1471-8286.2003.00573.x/epdf

Process Steps

Process Step 1

CC ID: 379858
Description:

Pairwise fertilization assays performed by combining proportional amounts gamete bundles (containing both eggs and sperm) from 2 parental colonies in replicated glass vials

Process Step 2

CC ID: 379859
Description:

Three replicates listed for each cross

Samples fixed in formalin-based fixative after ~ 6 hr and scored under a microscope at a later time

% fertilization = # cleaving embryos/(#cleaving embryos + # unfertilized eggs)
Process Contact: Miller, Margaret W
Email Address: m.miller.@secore.org

Process Step 3

CC ID: 379861
Description:

Also includes the multi-locus genotypes identifying individuals in the the parental population for O.faveolata

Multilocus genotypes based on microsattelite markers as described in

Baums IB, Hughes CR, and Hellberg M. 2005. Mendelian microsatellite loci for the Caribbean hard coral Acropora palmata. Marine Ecology Progress Series 288:115-127.

Severance EG, Szmant AM A, Karl S (2004) Microsatellite loci isolated from the Caribbean coral, Montastraea annularis. Mol Ecol Notes 4:74-76

as modified by:

Foster NL, Baums IB, Mumby PJ (2007) Sexual vs. asexual reproduction in an ecosystem entineer: the massive coral Montastraea annularis. J Anim Ecol 76:384-391
Process Contact: Miller, Margaret W
Email Address: m.miller.@secore.org

Process Step 4

CC ID: 379862
Description:

Multilocus genotypes for A.palmata available under NCEI Accession Number 0142175
Process Contact: Miller, Margaret W
Email Address: m.miller.@secore.org
Source: Williams, Dana E.; Miller, Margaret W. (2016). Elkhorn coral demographic monitoring from 2004-03-30 to 2015-10-09 (NCEI Accession 0142175)

Process Step 7

CC ID: 281823
Description:

Data are recorded directly into a lab notebook and then entered into Excel spreadsheets.

Child Items

Rubric scores updated every 15m

Rubric Score Type Title
Entity Data_Table_FertAssays
Entity Data_Table_GameteBundles
Entity Data_Table_OfavGenotypes
Document Dataset Metadata
Entity FertAssays Table MetaData
Entity GameteBundles Table MetaData
Entity OfavGenotypes Table MetaData

Catalog Details

Catalog Item ID: 30704
GUID: gov.noaa.nmfs.inport:30704
Metadata Record Created By: Carlos Rivero
Metadata Record Created: 2016-02-11 06:54+0000
Metadata Record Last Modified By: SysAdmin InPortAdmin
Metadata Record Last Modified: 2023-08-15 17:09+0000
Metadata Record Published: 2022-04-27
Owner Org: SEFSC
Metadata Publication Status: Published Externally
Do Not Publish?: N
Metadata Last Review Date: 2022-04-27
Metadata Review Frequency: 1 Year
Metadata Next Review Date: 2023-04-27