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SEFSC Metadata Library > POPULATION & ECOSYSTEMS MONITORING DIV > Other Protected Resources Projects > CRCP-Gamete/larval fitness of reef-building cor... > Fertilization compatibility of spawning corals... >

Data_Table_OfavGenotypes

Entity (ENT) | Southeast Fisheries Science Center (SEFSC)
GUID: gov.noaa.nmfs.inport:36575 | Updated: October 17, 2023 | Published / External

Summary

Item Identification

Entity Info

Data Attributes

Support Roles

Distribution Info

Catalog Details

Abstract

This data set includes experiments on fertilization compatibility among spawning corals, Acropora palmata and Orbicella faveolata, in the upper Florida Keys along with supporting information

Description

This data set includes experiments on fertilization compatibility among spawning corals, Acropora palmata and Orbicella faveolata, in the upper Florida Keys. Also includes the multi-locus genotypes identifying individuals in the the parental population for O.faveolata as determined by microsatellite markers described in:

Severance et al. (2004) Mol Ecol Notes 4:74-76

Foster et al. (2007) J Anim Ecol 76:384-391

Entity Type
Spreadsheet

Data Attribute / Type	Description
Site Character	Reef Name
Tag Character	Tag number applied to colony in the field
GenetID Character	Unique multilocus genotype designation as assigned by Penn State University (Dr. Iliana Baums)
MapGenet Character	Site-scale genotype designation used by divers in the field; Arbitrary colors are assigned to colonies which are clones of the same genotype (within sites) while 'singleton' designates a unique genotype (i.e. genotype represented by that single colony)
Lat Number	Latitude of colony
Lon Number	Longitude of colony
11_1 Character	First allele for locus 11
11_2 Character	Second allele of locus 11
28_1 Character	First allele for locus 28
28_2 Character	second allele of locus 28
4_1 Character	First allele for locus 4
4_2 Character	second allele of locus 4
5_1 Character	First allele for locus 5
5_2 Character	second allele of locus 5
8_1 Character	First allele for locus 8
8_2 Character	second allele of locus 8

Data Attribute / Type

Description

Site
Character

Reef Name

Tag
Character

Tag number applied to colony in the field

GenetID
Character

Unique multilocus genotype designation as assigned by Penn State University (Dr. Iliana Baums)

MapGenet
Character

Site-scale genotype designation used by divers in the field; Arbitrary colors are assigned to colonies which are clones of the same genotype (within sites) while 'singleton' designates a unique genotype (i.e. genotype represented by that single colony)

Lat
Number

Latitude of colony

Lon
Number

Longitude of colony

11_1
Character

First allele for locus 11

11_2
Character

Second allele of locus 11

28_1
Character

First allele for locus 28

28_2
Character

second allele of locus 28

4_1
Character

First allele for locus 4

4_2
Character

second allele of locus 4

5_1
Character

First allele for locus 5

5_2
Character

second allele of locus 5

8_1
Character

First allele for locus 8

8_2
Character

second allele of locus 8

Data_Table_OfavGenotypes.csv

CSV - Comma Separated Values (Text)

No Child Items for this record.

Distributor
National Centers for Environmental Information - Silver Spring, Maryland (NCEI-MD)
(301) 713-3277

Title:	Data_Table_OfavGenotypes
Short Name:	OfavGenotypes Data Table
Status:	Completed
Abstract:	This data set includes experiments on fertilization compatibility among spawning corals, Acropora palmata and Orbicella faveolata, in the upper Florida Keys along with supporting information

Entity Type:	Spreadsheet
Description:	This data set includes experiments on fertilization compatibility among spawning corals, Acropora palmata and Orbicella faveolata, in the upper Florida Keys. Also includes the multi-locus genotypes identifying individuals in the the parental population for O.faveolata as determined by microsatellite markers described in: Severance et al. (2004) Mol Ecol Notes 4:74-76 Foster et al. (2007) J Anim Ecol 76:384-391

Entity Type:

Spreadsheet

Description:

Severance et al. (2004) Mol Ecol Notes 4:74-76

Foster et al. (2007) J Anim Ecol 76:384-391

Attribute Summary

	Name	Type	Description
100	Site	Character	Reef Name
100	Tag	Character	Tag number applied to colony in the field
100	GenetID	Character	Unique multilocus genotype designation as assigned by Penn State University (Dr. Iliana Baums)
100	MapGenet	Character	Site-scale genotype designation used by divers in the field; Arbitrary colors are assigned to colonies which are clones of the same genotype (within sites) while 'singleton' designates a unique genotype (i.e. genotype represented by that single colony)
100	Lat	Number	Latitude of colony
100	Lon	Number	Longitude of colony
100	11_1	Character	First allele for locus 11
100	11_2	Character	Second allele of locus 11
100	28_1	Character	First allele for locus 28
100	28_2	Character	second allele of locus 28
100	4_1	Character	First allele for locus 4
100	4_2	Character	second allele of locus 4
100	5_1	Character	First allele for locus 5
100	5_2	Character	second allele of locus 5
100	8_1	Character	First allele for locus 8
100	8_2	Character	second allele of locus 8

Name

Type

Description

100

Site

Character

Reef Name

100

Tag

Character

Tag number applied to colony in the field

100

GenetID

Character

Unique multilocus genotype designation as assigned by Penn State University (Dr. Iliana Baums)

100

MapGenet

Character

100

Lat

Number

Latitude of colony

100

Lon

Number

Longitude of colony

100

11_1

Character

First allele for locus 11

100

11_2

Character

Second allele of locus 11

100

28_1

Character

First allele for locus 28

100

28_2

Character

second allele of locus 28

100

4_1

Character

First allele for locus 4

100

4_2

Character

second allele of locus 4

100

5_1

Character

First allele for locus 5

100

5_2

Character

second allele of locus 5

100

8_1

Character

First allele for locus 8

100

8_2

Character

second allele of locus 8

Attribute Details

Site

CC ID: 379088

Seq. Order:	1
Data Storage Type:	Character
Max Length:	13
Required:	No
Primary Key:	No
Status:	Active
Description:	Reef Name

Tag

CC ID: 379089

Seq. Order:	2
Data Storage Type:	Character
Max Length:	4
Required:	No
Primary Key:	No
Status:	Active
Description:	Tag number applied to colony in the field

GenetID

CC ID: 379090

Seq. Order:	3
Data Storage Type:	Character
Max Length:	7
Required:	No
Primary Key:	No
Status:	Active
Description:	Unique multilocus genotype designation as assigned by Penn State University (Dr. Iliana Baums)

MapGenet

CC ID: 379091

Seq. Order:	4
Data Storage Type:	Character
Max Length:	9
Required:	No
Primary Key:	No
Status:	Active
Description:	Site-scale genotype designation used by divers in the field; Arbitrary colors are assigned to colonies which are clones of the same genotype (within sites) while 'singleton' designates a unique genotype (i.e. genotype represented by that single colony)

Lat

CC ID: 379092

Seq. Order:	5
Data Storage Type:	Number
Max Length:	10
Required:	No
Primary Key:	No
Status:	Active
Description:	Latitude of colony

Lon

CC ID: 379093

Seq. Order:	6
Data Storage Type:	Number
Max Length:	10
Required:	No
Primary Key:	No
Status:	Active
Description:	Longitude of colony

11_1

CC ID: 379094

Seq. Order:	7
Data Storage Type:	Character
Max Length:	3
Required:	No
Primary Key:	No
Status:	Active
Description:	First allele for locus 11

11_2

CC ID: 379095

Seq. Order:	8
Data Storage Type:	Character
Max Length:	3
Required:	No
Primary Key:	No
Status:	Active
Description:	Second allele of locus 11

28_1

CC ID: 379096

Seq. Order:	9
Data Storage Type:	Character
Max Length:	3
Required:	No
Primary Key:	No
Status:	Active
Description:	First allele for locus 28

28_2

CC ID: 379097

Seq. Order:	10
Data Storage Type:	Character
Max Length:	3
Required:	No
Primary Key:	No
Status:	Active
Description:	second allele of locus 28

4_1

CC ID: 379098

Seq. Order:	11
Data Storage Type:	Character
Max Length:	3
Required:	No
Primary Key:	No
Status:	Active
Description:	First allele for locus 4

4_2

CC ID: 379099

Seq. Order:	12
Data Storage Type:	Character
Max Length:	3
Required:	No
Primary Key:	No
Status:	Active
Description:	second allele of locus 4

5_1

CC ID: 379100

Seq. Order:	13
Data Storage Type:	Character
Max Length:	3
Required:	No
Primary Key:	No
Status:	Active
Description:	First allele for locus 5

5_2

CC ID: 379101

Seq. Order:	14
Data Storage Type:	Character
Max Length:	3
Required:	No
Primary Key:	No
Status:	Active
Description:	second allele of locus 5

8_1

CC ID: 379102

Seq. Order:	15
Data Storage Type:	Character
Max Length:	3
Required:	No
Primary Key:	No
Status:	Active
Description:	First allele for locus 8

8_2

CC ID: 379103

Seq. Order:	16
Data Storage Type:	Character
Max Length:	3
Required:	No
Primary Key:	No
Status:	Active
Description:	second allele of locus 8

Distributor

CC ID: 767804

Date Effective From:	2017
Date Effective To:
Contact (Organization):	National Centers for Environmental Information - Silver Spring, Maryland (NCEI-MD)
Address:	NOAA/NESDIS E/OC SSMC3, 4th Floor, 1351 East-West Highway Silver Spring, MD 20910-3282
Phone:	(301) 713-3277
Contact Instructions:	Contact by email preferred.

View Historical Support Roles

Distribution 1

CC ID: 767802

Start Date:	2017
End Date:	Present
Download URL:	https://www.ncei.noaa.gov/archive/accession/0160349/1.1/data/0-data/30704/CSV/OfavGenotypes/Data_Table_OfavGenotypes.csv
Distributor:	National Centers for Environmental Information - Silver Spring, Maryland (NCEI-MD) (2017 - Present)
File Name:	Data_Table_OfavGenotypes.csv
File Type (Deprecated):	csv (comma-separated values)
Distribution Format:	CSV - Comma Separated Values (Text)
Compression:	Uncompressed
Review Status:	Chked Viruses Inapp Content

Catalog Item ID:	36575
GUID:	gov.noaa.nmfs.inport:36575
Metadata Record Created By:	David Huddleston
Metadata Record Created:	2017-01-31 09:48+0000
Metadata Record Last Modified By:	SysAdmin InPortAdmin
Metadata Record Last Modified:	2023-10-17 16:12+0000
Metadata Record Published:	2022-04-27
Owner Org:	SEFSC
Metadata Publication Status:	Published Externally
Do Not Publish?:	N
Metadata Last Review Date:	2022-04-27
Metadata Review Frequency:	1 Year
Metadata Next Review Date:	2023-04-27

Data_Table_OfavGenotypes

Summary

Entity Information

Distribution Information

Child Items

Contact Information

Item Identification

Entity Information

Data Attributes

Attribute Summary

Attribute Details

Site

Tag

GenetID

MapGenet

Lat

Lon

11_1

11_2

28_1

28_2

4_1

4_2

5_1

5_2

8_1

8_2

Support Roles

Distributor

Distribution Information

Distribution 1

Catalog Details