AFSC/ABL: Genetic Analysis of Immature Bering Sea Chum Salmon: Part I. Baseline Evaluation
Data Set (DS) | Alaska Fisheries Science Center (AFSC)GUID: gov.noaa.nmfs.inport:17219 | Updated: May 30, 2023 | Published / External
Summary
Short Citation
Alaska Fisheries Science Center, 2024: AFSC/ABL: Genetic Analysis of Immature Bering Sea Chum Salmon: Part I. Baseline Evaluation, https://www.fisheries.noaa.gov/inport/item/17219.
Full Citation Examples
Chum salmon populations from across their geographic distribution have been analyzed with a set of SNP and microsatellite markers. As is typical for chum salmon populations, more genetic divergence was observed on larger geographic scales than on smaller regional scales. Strong divergence exists within and among the three regions of Asia, western Alaska, and the northeast Pacific. However, separation of coastal western Alaskan summer-run chum salmon populations, from Norton Sound to northern Bristol Bay remains problematic. The degree of divergence determines the spatial scale to which stock proportions of mixtures of chum salmon can be resolved. The baseline developed in this project will be used for mixture analyses to study the marine distribution of chum salmon populations in the Bering Sea. Scale and fin samples collected in the eastern Bering Sea will be used to determine whether the stock composition of chum salmon aggregations differ across areas, seasonally, and annually. Determining the stock distributions of these mixtures will provide information on the migratory pathways of chum salmon in the Bering Sea and the potential impact of bycatch of coastal western Alaskan chum salmon in the Bering Sea pollock fishery.
Distribution Information
-
NCEI to be determined
Note: Dataset migrated by Dan Woodrich (AFSC data management coordinator) on 12/14/2021. Contact: Daniel.woodrich@noaa.gov
Contact the Point of Contact for access constraints if none are provided.
User must read and fully comprehend the metadata prior to use. User must acknowledge the Originator when using the data set as a source. User must share data products developed using the source data set with the Originator. Data should not be used beyond the limits of the source scale.
Controlled Theme Keywords
biota, oceans
Child Items
No Child Items for this record.
Contact Information
Point of Contact
Chris Kondzela
Chris.Kondzela@noaa.gov
Metadata Contact
Metadata Coordinators MC
AFSC.metadata@noaa.gov
Extents
-131° W,
-134.631° E,
58.3835° N,
58.3546° S
North Pacific Rim, Bering Sea, Asian coastline
1986 - 2006
Item Identification
| Title: | AFSC/ABL: Genetic Analysis of Immature Bering Sea Chum Salmon: Part I. Baseline Evaluation |
|---|---|
| Short Name: | AFSC/ABL: Genetic Analysis of Immature Bering Sea Chum Salmon: Part I. Baseline Evaluation |
| Status: | Completed |
| Publication Date: | Unknown |
| Abstract: |
Chum salmon populations from across their geographic distribution have been analyzed with a set of SNP and microsatellite markers. As is typical for chum salmon populations, more genetic divergence was observed on larger geographic scales than on smaller regional scales. Strong divergence exists within and among the three regions of Asia, western Alaska, and the northeast Pacific. However, separation of coastal western Alaskan summer-run chum salmon populations, from Norton Sound to northern Bristol Bay remains problematic. The degree of divergence determines the spatial scale to which stock proportions of mixtures of chum salmon can be resolved. The baseline developed in this project will be used for mixture analyses to study the marine distribution of chum salmon populations in the Bering Sea. Scale and fin samples collected in the eastern Bering Sea will be used to determine whether the stock composition of chum salmon aggregations differ across areas, seasonally, and annually. Determining the stock distributions of these mixtures will provide information on the migratory pathways of chum salmon in the Bering Sea and the potential impact of bycatch of coastal western Alaskan chum salmon in the Bering Sea pollock fishery. |
| Purpose: |
This dataset contains SNP and microsatellite marker information. |
| Notes: |
Loaded by batch 3841, 12-13-2012 14:42 |
Keywords
Theme Keywords
| Thesaurus | Keyword |
|---|---|
| ISO 19115 Topic Category |
biota
|
| ISO 19115 Topic Category |
oceans
|
| UNCONTROLLED | |
| ITIS | Oncorhynchus keta |
| None | Chum salmon |
| None | cross validation |
| None | Genetic baseline |
| None | microsatellites |
| None | mixed-stock analysis |
| None | single nucleotide polymorphisms |
Spatial Keywords
| Thesaurus | Keyword |
|---|---|
| UNCONTROLLED | |
| Geographic Names Information System | Alaska |
| Geographic Names Information System | Bering Sea |
Physical Location
| Organization: | Auke Bay Laboratories |
|---|---|
| City: | Juneau |
| State/Province: | AK |
| Country: | US |
Data Set Information
| Data Set Scope Code: | Data Set |
|---|---|
| Data Set Type: | Files |
| Maintenance Frequency: | None Planned |
| Data Presentation Form: | Document (digital) |
Support Roles
Data Steward
| Date Effective From: | 2015-10-17 |
|---|---|
| Date Effective To: | |
| Contact (Person): | Kondzela, Chris |
| Email Address: | Chris.Kondzela@noaa.gov |
Distributor
| Date Effective From: | 2015-10-17 |
|---|---|
| Date Effective To: | |
| Contact (Person): | Kondzela, Chris |
| Email Address: | Chris.Kondzela@noaa.gov |
Metadata Contact
| Date Effective From: | 2012-12-13 |
|---|---|
| Date Effective To: | |
| Contact (Person): | MC, Metadata Coordinators |
| Email Address: | AFSC.metadata@noaa.gov |
Originator
| Date Effective From: | 2012-12-13 |
|---|---|
| Date Effective To: | |
| Contact (Person): | Kondzela, Chris |
| Email Address: | chris.knodzela@noaa.gov |
Point of Contact
| Date Effective From: | 2015-10-17 |
|---|---|
| Date Effective To: | |
| Contact (Person): | Kondzela, Chris |
| Email Address: | Chris.Kondzela@noaa.gov |
Extents
| Currentness Reference: | Ground Condition |
|---|
Extent Group 1
Extent Group 1 / Geographic Area 1
| W° Bound: | -131 | |
|---|---|---|
| E° Bound: | -134.631 | |
| N° Bound: | 58.3835 | |
| S° Bound: | 58.3546 | |
| Description |
North Pacific Rim, Bering Sea, Asian coastline |
|
Extent Group 1 / Time Frame 1
| Time Frame Type: | Range |
|---|---|
| Start: | 1986 |
| End: | 2006 |
Access Information
| Security Class: | Unclassified |
|---|---|
| Data Access Procedure: |
N/A |
| Data Access Constraints: |
Contact the Point of Contact for access constraints if none are provided. |
| Data Use Constraints: |
User must read and fully comprehend the metadata prior to use. User must acknowledge the Originator when using the data set as a source. User must share data products developed using the source data set with the Originator. Data should not be used beyond the limits of the source scale. |
Distribution Information
Distribution 1
| Download URL: | https://console.cloud.google.com/storage/browser/_details/nmfs_odp_afsc/ABL/Genetic%20Analysis%20of%20Immature%20Bering%20Sea%20Chum%20Salmon%3B%20Part%20I.%20Baseline%20Evaluation_ID_17219/Genetics_Chum-Baseline_BeringSea_1986-2006_ID_17219.csv |
|---|---|
| Distributor: | |
| Description: |
NCEI to be determined Note: Dataset migrated by Dan Woodrich (AFSC data management coordinator) on 12/14/2021. Contact: Daniel.woodrich@noaa.gov |
Technical Environment
| Description: |
Microsoft Excel |
|---|
Data Quality
| Completeness Report: |
None |
|---|---|
| Quality Control Procedures Employed: |
Contact the dataset POC for full QA/QC methodology |
Data Management
| Have Resources for Management of these Data Been Identified?: | Yes |
|---|---|
| Approximate Percentage of Budget for these Data Devoted to Data Management: | Unknown |
| Do these Data Comply with the Data Access Directive?: | Yes |
| Is Access to the Data Limited Based on an Approved Waiver?: | No |
| If Distributor (Data Hosting Service) is Needed, Please Indicate: | yes |
| Approximate Delay Between Data Collection and Dissemination: | unknown |
| If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed: |
no delay |
| Actual or Planned Long-Term Data Archive Location: | To Be Determined |
| If To Be Determined, Unable to Archive, or No Archiving Intended, Explain: |
NCEI site to be determined |
| Approximate Delay Between Data Collection and Archiving: | unknown |
| How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive?: |
IT Security and Contingency Plan for the system establishes procedures and applies to the functions, operations, and resources necessary to recover and restore data as hosted in the Western Regional Support Center in Seattle, Washington, following a disruption. |
Lineage
| Lineage Statement: |
Contact the dataset POC for full methodology |
|---|
Catalog Details
| Catalog Item ID: | 17219 |
|---|---|
| GUID: | gov.noaa.nmfs.inport:17219 |
| Metadata Record Created By: | Doug Turnbull |
| Metadata Record Created: | 2012-12-13 14:42+0000 |
| Metadata Record Last Modified By: | SysAdmin InPortAdmin |
| Metadata Record Last Modified: | 2023-05-30 18:10+0000 |
| Metadata Record Published: | 2016-05-05 |
| Owner Org: | AFSC |
| Metadata Publication Status: | Published Externally |
| Do Not Publish?: | N |
| Metadata Last Review Date: | 2016-05-05 |
| Metadata Review Frequency: | 1 Year |
| Metadata Next Review Date: | 2017-05-05 |