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Short Citation:
Northwest Fisheries Science Center, 2022: Species detection and abundance using a biosensor - Development and Testing of in-situ Biological Sensors, https://www.fisheries.noaa.gov/inport/item/17812.

Item Identification

Title: Species detection and abundance using a biosensor - Development and Testing of in-situ Biological Sensors
Short Name: Species detection and abundance using a biosensor (Development and Testing of in-situ Biological Sensors)
Status: Completed
Abstract:

The Environmental Sample Processor (ESP), http://www.mbari.org/ESP/, is an autonomous biological sensing system that conducts in situ collection and molecular analysis of water samples and telemeters the results to shore in near real-time. The ESP can remotely detect and quantify abundance of target organisms using specific genetic probes. The probe generates a signal in the form of light, and an image of the array is taken using a camera and telemetered to shore for interpretation by experts. The intensity of the light signal is directly proportional to the abundance of the target that is present. Probes for 3 of the 4 primary HAB organisms in Puget Sound (i.e., Alexandrium, Heterosigma, and Pseudo-nitzschia) have already been used successfully on the ESP in the field. When deployed at key locations, the ESP can provide early warning of developing HABs and dramatically increase the opportunity for controlling the impacts of toxic blooms that can kill fish and contaminate shellfish. The goal of this project is to provide value added data to stakeholders in near real-time to improve early warning of HABs thereby reducing HAB-related economic losses and farmed-fish mortality and improving seafood safety. Another goal is to develop and test a method for use with the ESP to detect pathogenic Vibrio spp. (V. parahaemolyticus). Incorporating automated biosensor data into current risk and predictive models for the presence of HAB toxins and pathogens will result in a robust Health Early Warning System (HEWS). This work is designed to fill specific gaps in current risk and predictive models by providing rapid detection and reporting in real time for HABs and pathogens in conjunction with pertinent environmental data.

The project will produce datasets describing the abundance for specific harmful algae and pathogenic bacteria at deployment locations in Puget Sound.

Purpose:

Raw/field data, Monitoring or sensor data, Laboratory data

Notes:

Loaded by batch 4101, 01-23-2013 15:25

Supplemental Information:

These data are available to the public

Monitoring Program: Early warning of fish killing HABs via daily emails to stakeholders including fish farmers, shellfish farmers, and researchers

Data: Daily monitoring of HAB species that can kill fish and contaminate shellfish at key locations in Puget Sound during "at risk" time periods

Keywords

Theme Keywords

Thesaurus Keyword
UNCONTROLLED
PARR Exclusion Program Dissolved
None biosensors
None Biota, Habitat, Biological
None Environmental
None harmful algal bloom
None health early warning systems
None Ocean/Climate
None pathogens
None Physical Measures: Air
None Sediments
None Water

Spatial Keywords

Thesaurus Keyword
UNCONTROLLED
None Friday Harbor, WA

Physical Location

Organization: Northwest Fisheries Science Center
City: Seattle
State/Province: WA
Country: USA

Data Set Information

Data Set Scope Code: Data Set
Data Presentation Form: Table (digital)

Support Roles

Data Steward

CC ID: 298611
Date Effective From: 2015-10-01
Date Effective To:
Contact (Person): Trainer, Vera
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
Email Address: Vera.L.Trainer@noaa.gov
Phone: 206-860-6788

Distributor

CC ID: 298612
Date Effective From: 2015-10-01
Date Effective To:
Contact (Organization): Northwest Fisheries Science Center (NWFSC)
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
USA
Email Address: nmfs.nwfsc.metadata@noaa.gov
Phone: 206-860-3200
URL: NWFSC Home

Metadata Contact

CC ID: 298610
Date Effective From: 2015-10-01
Date Effective To:
Contact (Person): Contact, Metadata
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
USA
Email Address: nmfs.nwfsc.metadata@noaa.gov
Phone: (206) 860-3433

Originator

CC ID: 298614
Date Effective From: 2015-10-01
Date Effective To:
Contact (Person): Trainer, Vera
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
Email Address: Vera.L.Trainer@noaa.gov
Phone: 206-860-6788

Point of Contact

CC ID: 298613
Date Effective From: 2015-10-01
Date Effective To:
Contact (Person): Bolton, Jennie L
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
Email Address: Jennie.Bolton@noaa.gov
Phone: 206-860-3359
Fax: 206-860-3335

Extents

Extent Group 1

Extent Group 1 / Geographic Area 1

CC ID: 298617
W° Bound: -123.016
E° Bound: -123.016
N° Bound: 48.5348
S° Bound: 48.5348
Description

Friday Harbor, WA: Friday Harbor, WA

Extent Group 1 / Time Frame 1

CC ID: 298616
Time Frame Type: Range
Start: 2010-06-01
End: 2012-09-30

Access Information

Security Class: Unclassified
Data Access Procedure:

submit request by email or telephone

Data Access Constraints:

NA

Distribution Information

Distribution 1

CC ID: 298619
Download URL: http://www.ncei.noaa.gov
Distributor:
Description:

http://www.ncei.noaa.gov

Technical Environment

Description:

Access Database

Data Quality

Accuracy:

High

Quality Control Procedures Employed:

Pre- & post-deployment QC checks, positive & negative controls, standard curves

Data Management

Have Resources for Management of these Data Been Identified?: No
Approximate Percentage of Budget for these Data Devoted to Data Management: 5%
Do these Data Comply with the Data Access Directive?: Yes
Is Access to the Data Limited Based on an Approved Waiver?: No
If Distributor (Data Hosting Service) is Needed, Please Indicate: No
Approximate Delay Between Data Collection and Dissemination: 90 days
If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed:

No Delay

Actual or Planned Long-Term Data Archive Location: No Archiving Intended
If To Be Determined, Unable to Archive, or No Archiving Intended, Explain:

Trial deployment - limited data generated

Approximate Delay Between Data Collection and Archiving: 365 days
How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive?:

The Northwest Fisheries Science Center facilitates backup and recovery of all data and IT components which are managed by IT Operations through the capture of static (point-in-time) backup data to physical media. Once data is captured to physical media (every 1-3 days), a duplicate is made and routinely (weekly) transported to an offsite archive facility where it is maintained throughout the data's applicable life-cycle.

Lineage

Lineage Statement:

Image capture, image analysis, comparison to standard curve

Sources

NWFSC Annual Project Planning System

CC ID: 298618
Citation URL: http://www.webapps.nwfsc.noaa.gov/4222

Catalog Details

Catalog Item ID: 17812
GUID: gov.noaa.nmfs.inport:17812
Metadata Record Created By: Jeffrey W Cowen
Metadata Record Created: 2013-01-23 15:25+0000
Metadata Record Last Modified By: SysAdmin InPortAdmin
Metadata Record Last Modified: 2019-06-04 13:14+0000
Metadata Record Published: 2016-02-29
Owner Org: NWFSC
Metadata Publication Status: Published Externally
Do Not Publish?: N
Metadata Next Review Date: 2017-03-01