Elwha genetics - Elwha river salmonid genetics
Data Set (DS) | Northwest Fisheries Science Center (NWFSC)GUID: gov.noaa.nmfs.inport:17973 | Updated: August 9, 2022 | Published / External
Summary
Short Citation
Northwest Fisheries Science Center, 2024: Elwha genetics - Elwha river salmonid genetics, https://www.fisheries.noaa.gov/inport/item/17973.
Full Citation Examples
The Elwha Dams have been removed, with fish restoration to occur in areas previously inaccessible to salmonids. Fish recovery anticipates that genetic changes will occur to current populations, primarily due to genetic introgression between introduced and native stocks. For monitoring to occur, baseline genetics of Elwha river salmonids will be conducted on current populations.
Genetic data.
Distribution Information
-
This is a table of raw microsatellite genotypes for Onchorhynchus mykiss (both steelhead and rainbow trout) in the Elwha River watershed, WA, where each locus is represented by two alleles, 3 digits for each allele, where alleles are mobility/size determined, per standard published criteria. Loci are described in Winans et al. 2014. Conservation Genetics. 10.1007/s10592-014-0659-z. Data are grouped by collections. Each collection is separated by "pop." The first individual in a collection has an abbreviation for its collection name. They are in order: (rainbow trout collections) Delabarre, Chicago, Camp Wilder, Camp Wilder, Hayes ,Elkhorn, Geyser, Geyser, Cat, Whiskey Bend, Altaire, Griff Cr., Griff Cr., Madison Cr., Side Channel, Little R., Reservoir, S. Branch Little R., S. Branch Little R., (Steelhead collections), Brood Year 05, Brood Year 06, Brood Year 07, Brood Year 08, Brood Year 09, Brood Year 10, Brood Year 11, LEKT Hatchery, LEKT Hatchery, (Hatchery trout), Goldendale trout, Spokane trout.
-
This is a table of raw microsatellite genotypes for Onchorhynchus mykiss (both steelhead and rainbow trout) in the Elwha River watershed, WA, where each locus is represented by two alleles, 3 digits for each allele, where alleles are mobility/size determined, per standard published criteria. Loci are described in Winans et al. 2014. Conservation Genetics. 10.1007/s10592-014-0659-z. Data are grouped by collections. Each collection is separated by "pop." The first individual in a collection has an abbreviation for its collection name. They are in order: (rainbow trout collections) Delabarre, Chicago, Camp Wilder, Camp Wilder, Hayes ,Elkhorn, Geyser, Geyser, Cat, Whiskey Bend, Altaire, Griff Cr., Griff Cr., Madison Cr., Side Channel, Little R., Reservoir, S. Branch Little R., S. Branch Little R., (Steelhead collections), Brood Year 05, Brood Year 06, Brood Year 07, Brood Year 08, Brood Year 09, Brood Year 10, Brood Year 11, LEKT Hatchery, LEKT Hatchery, (Hatchery trout), Goldendale trout, Spokane trout.
NA
Child Items
No Child Items for this record.
Contact Information
Point of Contact
Linda Park
Linda.Park@noaa.gov
206-860-3241
Metadata Contact
Northwest Fisheries Science Center (NWFSC)
nmfs.nwfsc.metadata@noaa.gov
206-860-3200
Extents
-122.3062° W,
-122.3062° E,
47.6449° N,
47.6449° S
NWFSC Montlake: NWFSC Montlake DNA Lab
2005-10-01 - Present
Item Identification
| Title: | Elwha genetics - Elwha river salmonid genetics |
|---|---|
| Short Name: | Elwha genetics (Elwha river salmonid genetics) |
| Status: | In Work |
| Creation Date: | 2012-10-01 |
| Publication Date: | 2018-01-25 |
| Abstract: |
The Elwha Dams have been removed, with fish restoration to occur in areas previously inaccessible to salmonids. Fish recovery anticipates that genetic changes will occur to current populations, primarily due to genetic introgression between introduced and native stocks. For monitoring to occur, baseline genetics of Elwha river salmonids will be conducted on current populations. Genetic data. |
| Purpose: |
Addresses Legal Mandate Raw/field data, Monitoring or sensor data, Laboratory data |
| Notes: |
Loaded by batch 4261, 01-30-2013 17:44 |
| Supplemental Information: |
Subject to Public Access to Research Results (PARR): Yes |
Keywords
Theme Keywords
| Thesaurus | Keyword |
|---|---|
| UNCONTROLLED | |
| None | Elwha River |
Spatial Keywords
| Thesaurus | Keyword |
|---|---|
| UNCONTROLLED | |
| None | NWFSC Montlake |
Instrument Keywords
| Thesaurus | Keyword |
|---|---|
| UNCONTROLLED | |
| None | DNA Sequencer |
Platform Keywords
| Thesaurus | Keyword |
|---|---|
| UNCONTROLLED | |
| None | Animal and Plant Collection Device |
Physical Location
| Organization: | Northwest Fisheries Science Center |
|---|---|
| City: | Seattle |
| State/Province: | WA |
| Country: | USA |
Data Set Information
| Data Set Scope Code: | Data Set |
|---|---|
| Data Set Type: | Spreadsheet |
| Data Presentation Form: | Table (digital) |
Support Roles
Data Steward
| Date Effective From: | 2015-10-01 |
|---|---|
| Date Effective To: | |
| Contact (Person): | Park, Linda |
| Address: |
2725 Montlake Boulevard East Seattle, WA 98112 |
| Email Address: | Linda.Park@noaa.gov |
| Phone: | 206-860-3241 |
Distributor
| Date Effective From: | 2015-10-01 |
|---|---|
| Date Effective To: | |
| Contact (Organization): | Northwest Fisheries Science Center (NWFSC) |
| Address: |
2725 Montlake Boulevard East Seattle, WA 98112 USA |
| Email Address: | nmfs.nwfsc.metadata@noaa.gov |
| Phone: | 206-860-3200 |
| URL: | NWFSC Home |
Metadata Contact
| Date Effective From: | 2015-10-01 |
|---|---|
| Date Effective To: | |
| Contact (Organization): | Northwest Fisheries Science Center (NWFSC) |
| Address: |
2725 Montlake Boulevard East Seattle, WA 98112 USA |
| Email Address: | nmfs.nwfsc.metadata@noaa.gov |
| Phone: | 206-860-3200 |
| URL: | NWFSC Home |
Originator
| Date Effective From: | 2015-10-01 |
|---|---|
| Date Effective To: | |
| Contact (Person): | Winans, Gary |
| Address: |
2725 Montlake Boulevard East Seattle, WA 98112 |
| Email Address: | gary.winans@noaa.gov |
| Phone: | 206-860-3265 |
Point of Contact
| Date Effective From: | 2015-10-01 |
|---|---|
| Date Effective To: | |
| Contact (Person): | Park, Linda |
| Address: |
2725 Montlake Boulevard East Seattle, WA 98112 |
| Email Address: | Linda.Park@noaa.gov |
| Phone: | 206-860-3241 |
Extents
Extent Group 1
Extent Group 1 / Geographic Area 1
| W° Bound: | -122.3062 | |
|---|---|---|
| E° Bound: | -122.3062 | |
| N° Bound: | 47.6449 | |
| S° Bound: | 47.6449 | |
| Description |
NWFSC Montlake: NWFSC Montlake DNA Lab |
|
Extent Group 1 / Time Frame 1
| Time Frame Type: | Continuing |
|---|---|
| Start: | 2005-10-01 |
Access Information
| Security Class: | Unclassified |
|---|---|
| Data Access Procedure: |
At this time, contact the Data Manager for information on obtaining access to this data set. In the near future, the NWFSC will strive to provide all non-sensitive data resources as a web service in order to meet the NOAA Data Access Policy Directive (https://nosc.noaa.gov/EDMC/PD.DA.php). |
| Data Access Constraints: |
NA |
Distribution Information
Distribution 1
| Start Date: | 2018-01-25 |
|---|---|
| End Date: | Present |
| Download URL: | https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/tables/table/elwha_steelhead_genetics |
| Distributor: | Northwest Fisheries Science Center (NWFSC) (2015-10-01 - Present) |
| File Name: | Elwha Steelhead Genetics |
| Description: |
This is a table of raw microsatellite genotypes for Onchorhynchus mykiss (both steelhead and rainbow trout) in the Elwha River watershed, WA, where each locus is represented by two alleles, 3 digits for each allele, where alleles are mobility/size determined, per standard published criteria. Loci are described in Winans et al. 2014. Conservation Genetics. 10.1007/s10592-014-0659-z. Data are grouped by collections. Each collection is separated by "pop." The first individual in a collection has an abbreviation for its collection name. They are in order: (rainbow trout collections) Delabarre, Chicago, Camp Wilder, Camp Wilder, Hayes ,Elkhorn, Geyser, Geyser, Cat, Whiskey Bend, Altaire, Griff Cr., Griff Cr., Madison Cr., Side Channel, Little R., Reservoir, S. Branch Little R., S. Branch Little R., (Steelhead collections), Brood Year 05, Brood Year 06, Brood Year 07, Brood Year 08, Brood Year 09, Brood Year 10, Brood Year 11, LEKT Hatchery, LEKT Hatchery, (Hatchery trout), Goldendale trout, Spokane trout. |
Distribution 2
| Start Date: | 2018-01-25 |
|---|---|
| End Date: | Present |
| Download URL: | https://www.webapps.nwfsc.noaa.gov/parr/CB_17270_Winans_2016_Elwha_and_Steelhead_genetics_QAQC.xlsx |
| Distributor: | Northwest Fisheries Science Center (NWFSC) (2015-10-01 - Present) |
| File Name: | Elwha Steelhead Genetics |
| Description: |
This is a table of raw microsatellite genotypes for Onchorhynchus mykiss (both steelhead and rainbow trout) in the Elwha River watershed, WA, where each locus is represented by two alleles, 3 digits for each allele, where alleles are mobility/size determined, per standard published criteria. Loci are described in Winans et al. 2014. Conservation Genetics. 10.1007/s10592-014-0659-z. Data are grouped by collections. Each collection is separated by "pop." The first individual in a collection has an abbreviation for its collection name. They are in order: (rainbow trout collections) Delabarre, Chicago, Camp Wilder, Camp Wilder, Hayes ,Elkhorn, Geyser, Geyser, Cat, Whiskey Bend, Altaire, Griff Cr., Griff Cr., Madison Cr., Side Channel, Little R., Reservoir, S. Branch Little R., S. Branch Little R., (Steelhead collections), Brood Year 05, Brood Year 06, Brood Year 07, Brood Year 08, Brood Year 09, Brood Year 10, Brood Year 11, LEKT Hatchery, LEKT Hatchery, (Hatchery trout), Goldendale trout, Spokane trout. |
URLs
URL 1
| URL: | https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/datasets/dataset/17270 |
|---|---|
| Name: | Elwha genetics |
| URL Type: |
Online Resource
|
| File Resource Format: | Web site |
| Description: |
NWFSC Dataset Information page. Genetic data |
URL 2
| URL: | https://www.webapps.nwfsc.noaa.gov/parr/CB_17270_Winans_2016_Elwha_and_Steelhead_genetics_QAQC.xlsx |
|---|---|
| Name: | https://www.webapps.nwfsc.noaa.gov/parr/CB_17270_Winans_2016_Elwha_and_Steelhead_genetics_QAQC.xlsx |
| URL Type: |
Online Resource
|
| File Resource Format: | Web site |
| Description: |
Genetic data |
Technical Environment
| Description: |
Spreadsheet |
|---|
Data Quality
| Accuracy: |
Low |
|---|---|
| Quality Control Procedures Employed: |
These data were collected and processed in accordance with established protocols and best practices under the direction of the project’s Principal Investigator. Contact the dataset Data Manager in section 3 for full QA/QC methodology. |
Data Management
| Have Resources for Management of these Data Been Identified?: | Yes |
|---|---|
| Approximate Percentage of Budget for these Data Devoted to Data Management: | 0 |
| Do these Data Comply with the Data Access Directive?: | No |
| Is Access to the Data Limited Based on an Approved Waiver?: | No |
| If Distributor (Data Hosting Service) is Needed, Please Indicate: | Yes |
| Approximate Delay Between Data Collection and Dissemination: | 0 days |
| If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed: |
No Delay |
| Actual or Planned Long-Term Data Archive Location: | NCEI-MD |
| Approximate Delay Between Data Collection and Archiving: | 365 |
| How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive?: |
The Northwest Fisheries Science Center facilitates backup and recovery of all data and IT components which are managed by IT Operations through the capture of static (point-in-time) backup data to physical media. Once data is captured to physical media (every 1-3 days), a duplicate is made and routinely (weekly) transported to an offsite archive facility where it is maintained throughout the data's applicable life-cycle. |
Lineage
| Lineage Statement: |
Standard population genetic analyses was performed |
|---|
Catalog Details
| Catalog Item ID: | 17973 |
|---|---|
| GUID: | gov.noaa.nmfs.inport:17973 |
| Metadata Record Created By: | Jeffrey W Cowen |
| Metadata Record Created: | 2013-01-30 17:44+0000 |
| Metadata Record Last Modified By: | SysAdmin InPortAdmin |
| Metadata Record Last Modified: | 2022-08-09 17:11+0000 |
| Metadata Record Published: | 2019-06-04 |
| Owner Org: | NWFSC |
| Metadata Publication Status: | Published Externally |
| Do Not Publish?: | N |
| Metadata Last Review Date: | 2019-06-04 |
| Metadata Review Frequency: | 1 Year |
| Metadata Next Review Date: | 2020-06-04 |