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Short Citation:
Northwest Fisheries Science Center, 2022: Ocean acidification genetics - Genetics and genomics of response to ocean acidification, https://www.fisheries.noaa.gov/inport/item/18091.

Item Identification

Title: Ocean acidification genetics - Genetics and genomics of response to ocean acidification
Short Name: Ocean acidification genetics (Genetics and genomics of response to ocean acidification)
Status: Completed
Creation Date: 2013-08-12
Publication Date: 2019-06-10
Abstract:

We are applying a variety of genetic tools to assess the response of our ocean resources to ocean acidification, including gene expression techniques, identification of candidate genes, and application of genomics. The focus of this research is to determine whether or to what extent the responses of key marine organisms to ocean acidification are evolutionary or phenotypically plastic. At present, this research focuses on invertebrates such as arthropods (e.g., Dungeness crab) and molluscs (e.g., clams, oysters, mussels), but will eventually also include vertebrates (e.g., marine and anadromous fishes).

Genetics and traits.

Purpose:

Laboratory data

Notes:

Loaded by batch 4330, 02-04-2013 20:03

Supplemental Information:

Subject to Public Access to Research Results (PARR): Yes

Keywords

Theme Keywords

Thesaurus Keyword
UNCONTROLLED
None genetics
None ocean acidification

Spatial Keywords

Thesaurus Keyword
UNCONTROLLED
None NWFSC Montlake

Instrument Keywords

Thesaurus Keyword
UNCONTROLLED
None DNA Sequencer

Physical Location

Organization: Northwest Fisheries Science Center
City: Seattle
State/Province: WA
Country: USA

Data Set Information

Data Set Scope Code: Data Set
Data Set Type: Spreadsheet
Data Presentation Form: Table (digital)

Support Roles

Data Steward

CC ID: 855316
Date Effective From: 2015-01-01
Date Effective To:
Contact (Person): McElhany, Paul
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
Email Address: Paul.McElhany@noaa.gov
Phone: 206-860-5608

Distributor

CC ID: 855317
Date Effective From: 2015-01-01
Date Effective To:
Contact (Organization): Northwest Fisheries Science Center (NWFSC)
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
USA
Email Address: nmfs.nwfsc.metadata@noaa.gov
Phone: 206-860-3200
URL: NWFSC Home

Metadata Contact

CC ID: 855315
Date Effective From: 2015-01-01
Date Effective To:
Contact (Organization): Northwest Fisheries Science Center (NWFSC)
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
USA
Email Address: nmfs.nwfsc.metadata@noaa.gov
Phone: 206-860-3200
URL: NWFSC Home

Originator

CC ID: 855319
Date Effective From: 2015-01-01
Date Effective To:
Contact (Person): Nichols, Krista
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
Email Address: Krista.Nichols@noaa.gov
Phone: 206-302-2470

Point of Contact

CC ID: 855318
Date Effective From: 2015-01-01
Date Effective To:
Contact (Person): McElhany, Paul
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
Email Address: Paul.McElhany@noaa.gov
Phone: 206-860-5608

Extents

Extent Group 1

Extent Group 1 / Geographic Area 1

CC ID: 855325
W° Bound: -122.3062
E° Bound: -122.3062
N° Bound: 47.6449
S° Bound: 47.6449
Description

NWFSC Montlake

Extent Group 1 / Time Frame 1

CC ID: 855324
Time Frame Type: Continuing
Start: 2011-10-01

Access Information

Security Class: Unclassified
Data Access Procedure:

At this time, contact the Data Manager for information on obtaining access to this data set. In the near future, the NWFSC will strive to provide all non-sensitive data resources as a web service in order to meet the NOAA Data Access Policy Directive (https://nosc.noaa.gov/EDMC/PD.DA.php).

Data Access Constraints:

NA

Distribution Information

Distribution 1

CC ID: 855320
Start Date: 2019-06-10
End Date: Present
Download URL: https://www.webapps.nwfsc.noaa.gov/parr/mx 339117 Krista Nichols_dungeness crabs_whole animals_09-2017_PARR.xlsx
Distributor: Northwest Fisheries Science Center (NWFSC) (2015-01-01 - Present)
File Name: Ocean acidification genetics - Dungeness Crab
Description:

Genetics and genomics of response to ocean acidification - Dungeness Crab

Distribution 2

CC ID: 855321
Start Date: 2019-06-10
End Date: Present
Download URL: https://www.webapps.nwfsc.noaa.gov/parr/mx 339186_Nichols_CSH-QTOF MS_lipidomics_09-2017_PARR.xlsx
Distributor: Northwest Fisheries Science Center (NWFSC) (2015-01-01 - Present)
File Name: Ocean acidification genetics - Lipids
Description:

Genetics and genomics of response to ocean acidification - Lipids

URLs

URL 1

CC ID: 855322
URL: https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/datasets/dataset/11041
Name: Ocean acidification genetics
URL Type:
Online Resource
File Resource Format: Web site
Description:

NWFSC Dataset Information page. Genetics and traits

Technical Environment

Description:

Spreadsheet

Data Quality

Accuracy:

High

Quality Control Procedures Employed:

These data were collected and processed in accordance with established protocols and best practices under the direction of the project’s Principal Investigator. Contact the dataset Data Manager in section 3 for full QA/QC methodology.

Data Management

Have Resources for Management of these Data Been Identified?: No
Approximate Percentage of Budget for these Data Devoted to Data Management: 1
Do these Data Comply with the Data Access Directive?: No
Is Access to the Data Limited Based on an Approved Waiver?: No
If Distributor (Data Hosting Service) is Needed, Please Indicate: No
Approximate Delay Between Data Collection and Dissemination: 0 days
If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed:

No Delay

Actual or Planned Long-Term Data Archive Location: NCEI-MD
Approximate Delay Between Data Collection and Archiving: 90
How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive?:

The Northwest Fisheries Science Center facilitates backup and recovery of all data and IT components which are managed by IT Operations through the capture of static (point-in-time) backup data to physical media. Once data is captured to physical media (every 1-3 days), a duplicate is made and routinely (weekly) transported to an offsite archive facility where it is maintained throughout the data's applicable life-cycle.

Lineage

Lineage Statement:

Allele frequency and genotypic data generated from DNA sequence. These data were collected and processed in accordance with established protocols and best practices under the direction of the project’s Principal Investigator. Contact the dataset Data Manager for full QA/QC methodology.

Catalog Details

Catalog Item ID: 18091
GUID: gov.noaa.nmfs.inport:18091
Metadata Record Created By: Jeffrey W Cowen
Metadata Record Created: 2013-02-04 20:03+0000
Metadata Record Last Modified By: Jeffrey W Cowen
Metadata Record Last Modified: 2019-06-10 16:03+0000
Metadata Record Published: 2019-06-10
Owner Org: NWFSC
Metadata Publication Status: Published Externally
Do Not Publish?: N
Metadata Next Review Date: 2020-06-10