Ocean acidification genetics - Genetics and genomics of response to ocean acidification
Data Set (DS) | Northwest Fisheries Science Center (NWFSC)GUID: gov.noaa.nmfs.inport:18091 | Updated: August 9, 2022 | Published / External
Summary
Short Citation
Northwest Fisheries Science Center, 2024: Ocean acidification genetics - Genetics and genomics of response to ocean acidification, https://www.fisheries.noaa.gov/inport/item/18091.
Full Citation Examples
We are applying a variety of genetic tools to assess the response of our ocean resources to ocean acidification, including gene expression techniques, identification of candidate genes, and application of genomics. The focus of this research is to determine whether or to what extent the responses of key marine organisms to ocean acidification are evolutionary or phenotypically plastic. At present, this research focuses on invertebrates such as arthropods (e.g., Dungeness crab) and molluscs (e.g., clams, oysters, mussels), but will eventually also include vertebrates (e.g., marine and anadromous fishes).
Genetics and traits.
Distribution Information
-
Genetics and genomics of response to ocean acidification - Dungeness Crab
-
Genetics and genomics of response to ocean acidification - Lipids
NA
Child Items
No Child Items for this record.
Contact Information
Point of Contact
Paul McElhany
Paul.McElhany@noaa.gov
206-860-5608
Metadata Contact
Northwest Fisheries Science Center (NWFSC)
nmfs.nwfsc.metadata@noaa.gov
206-860-3200
NWFSC Home
Extents
-122.3062° W,
-122.3062° E,
47.6449° N,
47.6449° S
NWFSC Montlake
2011-10-01 - Present
Item Identification
Title: | Ocean acidification genetics - Genetics and genomics of response to ocean acidification |
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Short Name: | Ocean acidification genetics (Genetics and genomics of response to ocean acidification) |
Status: | Completed |
Creation Date: | 2013-08-12 |
Publication Date: | 2019-06-10 |
Abstract: |
We are applying a variety of genetic tools to assess the response of our ocean resources to ocean acidification, including gene expression techniques, identification of candidate genes, and application of genomics. The focus of this research is to determine whether or to what extent the responses of key marine organisms to ocean acidification are evolutionary or phenotypically plastic. At present, this research focuses on invertebrates such as arthropods (e.g., Dungeness crab) and molluscs (e.g., clams, oysters, mussels), but will eventually also include vertebrates (e.g., marine and anadromous fishes). Genetics and traits. |
Purpose: |
Laboratory data |
Notes: |
Loaded by batch 4330, 02-04-2013 20:03 |
Supplemental Information: |
Subject to Public Access to Research Results (PARR): Yes |
Keywords
Theme Keywords
Thesaurus | Keyword |
---|---|
UNCONTROLLED | |
None | genetics |
None | ocean acidification |
Spatial Keywords
Thesaurus | Keyword |
---|---|
UNCONTROLLED | |
None | NWFSC Montlake |
Instrument Keywords
Thesaurus | Keyword |
---|---|
UNCONTROLLED | |
None | DNA Sequencer |
Physical Location
Organization: | Northwest Fisheries Science Center |
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City: | Seattle |
State/Province: | WA |
Country: | USA |
Data Set Information
Data Set Scope Code: | Data Set |
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Data Set Type: | Spreadsheet |
Data Presentation Form: | Table (digital) |
Support Roles
Data Steward
Date Effective From: | 2015-01-01 |
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Date Effective To: | |
Contact (Person): | McElhany, Paul |
Address: |
2725 Montlake Boulevard East Seattle, WA 98112 |
Email Address: | Paul.McElhany@noaa.gov |
Phone: | 206-860-5608 |
Distributor
Date Effective From: | 2015-01-01 |
---|---|
Date Effective To: | |
Contact (Organization): | Northwest Fisheries Science Center (NWFSC) |
Address: |
2725 Montlake Boulevard East Seattle, WA 98112 USA |
Email Address: | nmfs.nwfsc.metadata@noaa.gov |
Phone: | 206-860-3200 |
URL: | NWFSC Home |
Metadata Contact
Date Effective From: | 2015-01-01 |
---|---|
Date Effective To: | |
Contact (Organization): | Northwest Fisheries Science Center (NWFSC) |
Address: |
2725 Montlake Boulevard East Seattle, WA 98112 USA |
Email Address: | nmfs.nwfsc.metadata@noaa.gov |
Phone: | 206-860-3200 |
URL: | NWFSC Home |
Originator
Date Effective From: | 2015-01-01 |
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Date Effective To: | |
Contact (Person): | Nichols, Krista |
Address: |
2725 Montlake Boulevard East Seattle, WA 98112 |
Email Address: | Krista.Nichols@noaa.gov |
Phone: | 206-302-2470 |
Point of Contact
Date Effective From: | 2015-01-01 |
---|---|
Date Effective To: | |
Contact (Person): | McElhany, Paul |
Address: |
2725 Montlake Boulevard East Seattle, WA 98112 |
Email Address: | Paul.McElhany@noaa.gov |
Phone: | 206-860-5608 |
Extents
Extent Group 1
Extent Group 1 / Geographic Area 1
W° Bound: | -122.3062 | |
---|---|---|
E° Bound: | -122.3062 | |
N° Bound: | 47.6449 | |
S° Bound: | 47.6449 | |
Description |
NWFSC Montlake |
Extent Group 1 / Time Frame 1
Time Frame Type: | Continuing |
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Start: | 2011-10-01 |
Access Information
Security Class: | Unclassified |
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Data Access Procedure: |
At this time, contact the Data Manager for information on obtaining access to this data set. In the near future, the NWFSC will strive to provide all non-sensitive data resources as a web service in order to meet the NOAA Data Access Policy Directive (https://nosc.noaa.gov/EDMC/PD.DA.php). |
Data Access Constraints: |
NA |
Distribution Information
Distribution 1
Start Date: | 2019-06-10 |
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End Date: | Present |
Download URL: | https://www.webapps.nwfsc.noaa.gov/parr/mx 339117 Krista Nichols_dungeness crabs_whole animals_09-2017_PARR.xlsx |
Distributor: | Northwest Fisheries Science Center (NWFSC) (2015-01-01 - Present) |
File Name: | Ocean acidification genetics - Dungeness Crab |
Description: |
Genetics and genomics of response to ocean acidification - Dungeness Crab |
Distribution 2
Start Date: | 2019-06-10 |
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End Date: | Present |
Download URL: | https://www.webapps.nwfsc.noaa.gov/parr/mx 339186_Nichols_CSH-QTOF MS_lipidomics_09-2017_PARR.xlsx |
Distributor: | Northwest Fisheries Science Center (NWFSC) (2015-01-01 - Present) |
File Name: | Ocean acidification genetics - Lipids |
Description: |
Genetics and genomics of response to ocean acidification - Lipids |
URLs
URL 1
URL: | https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/datasets/dataset/11041 |
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Name: | Ocean acidification genetics |
URL Type: |
Online Resource
|
File Resource Format: | Web site |
Description: |
NWFSC Dataset Information page. Genetics and traits |
Technical Environment
Description: |
Spreadsheet |
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Data Quality
Accuracy: |
High |
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Quality Control Procedures Employed: |
These data were collected and processed in accordance with established protocols and best practices under the direction of the project’s Principal Investigator. Contact the dataset Data Manager in section 3 for full QA/QC methodology. |
Data Management
Have Resources for Management of these Data Been Identified?: | No |
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Approximate Percentage of Budget for these Data Devoted to Data Management: | 1 |
Do these Data Comply with the Data Access Directive?: | No |
Is Access to the Data Limited Based on an Approved Waiver?: | No |
If Distributor (Data Hosting Service) is Needed, Please Indicate: | No |
Approximate Delay Between Data Collection and Dissemination: | 0 days |
If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed: |
No Delay |
Actual or Planned Long-Term Data Archive Location: | NCEI-MD |
Approximate Delay Between Data Collection and Archiving: | 90 |
How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive?: |
The Northwest Fisheries Science Center facilitates backup and recovery of all data and IT components which are managed by IT Operations through the capture of static (point-in-time) backup data to physical media. Once data is captured to physical media (every 1-3 days), a duplicate is made and routinely (weekly) transported to an offsite archive facility where it is maintained throughout the data's applicable life-cycle. |
Lineage
Lineage Statement: |
Allele frequency and genotypic data generated from DNA sequence. These data were collected and processed in accordance with established protocols and best practices under the direction of the project’s Principal Investigator. Contact the dataset Data Manager for full QA/QC methodology. |
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Catalog Details
Catalog Item ID: | 18091 |
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GUID: | gov.noaa.nmfs.inport:18091 |
Metadata Record Created By: | Jeffrey W Cowen |
Metadata Record Created: | 2013-02-04 20:03+0000 |
Metadata Record Last Modified By: | SysAdmin InPortAdmin |
Metadata Record Last Modified: | 2022-08-09 17:11+0000 |
Metadata Record Published: | 2019-06-10 |
Owner Org: | NWFSC |
Metadata Publication Status: | Published Externally |
Do Not Publish?: | N |
Metadata Last Review Date: | 2019-06-10 |
Metadata Review Frequency: | 1 Year |
Metadata Next Review Date: | 2020-06-10 |