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Short Citation:
Northwest Fisheries Science Center, 2022: OBSOLETE: Coral genetic - Taxonomic and genetic identification of deep-sea corals in bycatch and field surveys -linked to groundfish survey dataset, https://www.fisheries.noaa.gov/inport/item/30827.

Item Identification

Title: OBSOLETE: Coral genetic - Taxonomic and genetic identification of deep-sea corals in bycatch and field surveys -linked to groundfish survey dataset
Abstract:

Data for this project will reside in the West Coast Groundfish Bottom Trawl Survey Data Base. This proposal relates to a continuation and augmentation of our efforts in creating a DNA sequence repository and voucher collection of coral and sponge species found off the U.S. West Coast, and initial steps toward population-level analysis in deep-sea octocorals and sponges using microsatellite loci. We propose to continue taking genetic samples from specimens collected during the 2012 West Coast Groundfish Bottom Trawl Survey, and continue DNA sequencing of those specimens. We will then link the DNA data to our verified specimens to create a West Coast repository that will serve not only as an essential resource for coral researchers and other stakeholders, but also as a foundation for future research efforts at the NWFSC, aimed at understanding the biogeography and ecology of coral species in these deep-sea communities.

Our primary goals with this funding opportunity are to hire an NRC postdoctoral fellow to work full-time on this project, and to continue to support at-sea specimen collection.

Coral DNA represented by Data Set "Deep Sea Coral voucher sequence dataset".

Keywords

Theme Keywords

Thesaurus Keyword
UNCONTROLLED
PARR Exclusion Obsolete

Physical Location

Organization: Northwest Fisheries Science Center
City: Seattle
State/Province: WA
Country: USA

Data Set Information

Data Set Scope Code: Data Set
Data Presentation Form: Other

Support Roles

Data Steward

CC ID: 296723
Date Effective From: 2015-10-01
Date Effective To:
Contact (Person): Berntson, Ewann A
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
Email Address: Ewann.Berntson@noaa.gov
Phone: 360-871-8333

Distributor

CC ID: 296724
Date Effective From: 2015-10-01
Date Effective To:
Contact (Organization): Northwest Fisheries Science Center (NWFSC)
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
USA
Email Address: nmfs.nwfsc.metadata@noaa.gov
Phone: 206-860-3200
URL: NWFSC Home

Metadata Contact

CC ID: 296722
Date Effective From: 2015-10-01
Date Effective To:
Contact (Person): Contact, Metadata
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
USA
Email Address: nmfs.nwfsc.metadata@noaa.gov
Phone: (206) 860-3433

Originator

CC ID: 296726
Date Effective From: 2015-10-01
Date Effective To:
Contact (Person): Berntson, Ewann A
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
Email Address: Ewann.Berntson@noaa.gov
Phone: 360-871-8333

Point of Contact

CC ID: 296725
Date Effective From: 2015-10-01
Date Effective To:
Contact (Person): Barnas Torpey, Katie
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
Email Address: Katie.Barnas@noaa.gov
Phone: 206-860-3363

Extents

Extent Group 1

Extent Group 1 / Geographic Area 1

CC ID: 296729
W° Bound: -122.3062
E° Bound: -122.3062
N° Bound: 47.6449
S° Bound: 47.6449
Description

NWFSC Montalke: NWFSC Montlake DNA lab

Extent Group 1 / Time Frame 1

CC ID: 296728
Time Frame Type: Range
Start: 2012-02-01
End: 2015-09-28

Extent Group 2

Extent Group 2 / Geographic Area 1

CC ID: 296732
W° Bound: -122.3062
E° Bound: -122.3062
N° Bound: 47.6449
S° Bound: 47.6449
Description

California Current System: US-Canada to US-Mexico at depths of 55 to 1280 m

Extent Group 2 / Time Frame 1

CC ID: 296731
Time Frame Type: Range
Start: 2012-02-01
End: 2015-09-28

Access Information

Security Class: Unclassified
Data Access Procedure:

At this time, contact the Data Manager for information on obtaining access to this data set. In the near future, the NWFSC will strive to provide all non-sensitive data resources as a web service in order to meet the NOAA Data Access Policy Directive (https://nosc.noaa.gov/EDMC/PD.DA.php).

Data Access Constraints:

NA

Distribution Information

Distribution 1

CC ID: 296734
Download URL: https://deepseacoraldata.noaa.gov/
Distributor:
Description:

https://deepseacoraldata.noaa.gov/

Data Quality

Quality Control Procedures Employed:

Sequencing quality checks: these data were collected and processed in accordance with established protocols and best practices under the direction of the projects Principal Investigator. Contact the dataset Data Manager for full QA/QC methodology.

Data Management

Have Resources for Management of these Data Been Identified?: Yes
Approximate Percentage of Budget for these Data Devoted to Data Management: 15%
Do these Data Comply with the Data Access Directive?: No
Is Access to the Data Limited Based on an Approved Waiver?: No
If Distributor (Data Hosting Service) is Needed, Please Indicate: No
Approximate Delay Between Data Collection and Dissemination: 100 days
If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed:

No Delay

Actual or Planned Long-Term Data Archive Location: Other
If World Data Center or Other, Specify: NOAAs Deep Sea Coral Research and Technology Program
Approximate Delay Between Data Collection and Archiving: 365 days
How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive?:

The Northwest Fisheries Science Center facilitates backup and recovery of all data and IT components which are managed by IT Operations through the capture of static (point-in-time) backup data to physical media. Once data is captured to physical media (every 1-3 days), a duplicate is made and routinely (weekly) transported to an offsite archive facility where it is maintained throughout the data's applicable life-cycle.

Lineage

Lineage Statement:

DNA extraction and sequencing, morphological identifications made, SEM images, QA/QC, phylogenetic analysis

Sources

NWFSC Annual Project Planning System

CC ID: 296733
Citation URL: http://www.webapps.nwfsc.noaa.gov/10692

Catalog Details

Catalog Item ID: 30827
GUID: gov.noaa.nmfs.inport:30827
Metadata Record Created By: Jeffrey W Cowen
Metadata Record Created: 2016-02-23 15:58+0000
Metadata Record Last Modified By: SysAdmin InPortAdmin
Metadata Record Last Modified: 2022-08-09 17:11+0000
Metadata Record Published: 2016-02-28
Owner Org: NWFSC
Metadata Publication Status: Published Externally
Do Not Publish?: N
Metadata Last Review Date: 2016-02-28
Metadata Review Frequency: 1 Year
Metadata Next Review Date: 2017-02-28