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Short Citation:
Northwest Fisheries Science Center, 2022: Cedar River Chinook genotypes - Estimate relative reproductive success of hatchery and wild fall Chinook salmon in the Cedar River, https://www.fisheries.noaa.gov/inport/item/30846.

Item Identification

Title: Cedar River Chinook genotypes - Estimate relative reproductive success of hatchery and wild fall Chinook salmon in the Cedar River
Status: Completed
Publication Date: 2018-02-05
Abstract:

We are using genetic pedigree information to estimate the reproductive success of hatchery and wild fall-run Chinook salmon spawning in the Cedar River, Washington.

Genotypes and associated phenotypes for Cedar River Chinook salmon.

Supplemental Information:

Subject to Public Access to Research Results (PARR): Yes

Keywords

Theme Keywords

Thesaurus Keyword
UNCONTROLLED
None artificial propagation
None Chinook salmon
None reproductive success

Spatial Keywords

Thesaurus Keyword
UNCONTROLLED
None Cedar River

Instrument Keywords

Thesaurus Keyword
UNCONTROLLED
None DNA Sequencer

Physical Location

Organization: Northwest Fisheries Science Center
City: Seattle
State/Province: WA
Country: USA

Data Set Information

Data Set Scope Code: Data Set
Data Set Type: Spreadsheet
Data Presentation Form: Table (digital)

Support Roles

Data Steward

CC ID: 848651
Date Effective From: 2015-10-01
Date Effective To:
Contact (Person): Ford, Mike J
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
Email Address: Mike.Ford@noaa.gov
Phone: 206-860-5612

Distributor

CC ID: 848652
Date Effective From: 2015-10-01
Date Effective To:
Contact (Organization): Northwest Fisheries Science Center (NWFSC)
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
USA
Email Address: nmfs.nwfsc.metadata@noaa.gov
Phone: 206-860-3200
URL: NWFSC Home

Metadata Contact

CC ID: 848650
Date Effective From: 2015-10-01
Date Effective To:
Contact (Organization): Northwest Fisheries Science Center (NWFSC)
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
USA
Email Address: nmfs.nwfsc.metadata@noaa.gov
Phone: 206-860-3200
URL: NWFSC Home

Originator

CC ID: 848654
Date Effective From: 2015-10-01
Date Effective To:
Contact (Person): Ford, Mike J
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
Email Address: Mike.Ford@noaa.gov
Phone: 206-860-5612

Point of Contact

CC ID: 848653
Date Effective From: 2015-10-01
Date Effective To:
Contact (Person): Ford, Mike J
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
Email Address: Mike.Ford@noaa.gov
Phone: 206-860-5612

Extents

Extent Group 1

Extent Group 1 / Geographic Area 1

CC ID: 848662
W° Bound: -122.3062
E° Bound: -122.3062
N° Bound: 47.6449
S° Bound: 47.6449
Description

Cedar River

Extent Group 1 / Time Frame 1

CC ID: 848661
Time Frame Type: Range
Start: 2015-08-10
End: 2015-11-01

Access Information

Security Class: Unclassified
Data Access Procedure:

At this time, contact the Data Manager for information on obtaining access to this data set. In the near future, the NWFSC will strive to provide all non-sensitive data resources as a web service in order to meet the NOAA Data Access Policy Directive (https://nosc.noaa.gov/EDMC/PD.DA.php).

Data Access Constraints:

NA

Distribution Information

Distribution 1

CC ID: 848656
Start Date: 2018-02-05
End Date: Present
Download URL: https://www.webapps.nwfsc.noaa.gov/apex/parr/chinook_genotypes_cedar_river_2010_2011_and_2014/data/page/
Distributor: Northwest Fisheries Science Center (NWFSC) (2015-10-01 - Present)
File Name: Chinook Genotypes Cedar River 2010, 2011, and 2014
Description:

Single nucleotide polymorphism (SNP) data from Chinook salmon sampled at Landsberg Dam on the Cedar River, WA, in 2010, 2011, and 2014 Each row in the table contains the genotype of an individual fish for 96 SNP loci.

Distribution 2

CC ID: 848658
Start Date: 2018-02-05
End Date: Present
Download URL: https://www.webapps.nwfsc.noaa.gov/apex/parr/chinook_phenotypes_cedar_river_2010_2011_and_2014/data/page/
Distributor: Northwest Fisheries Science Center (NWFSC) (2015-10-01 - Present)
File Name: Chinook Phenotypes Cedar River 2010, 2011, and 201
Description:

Sampling information for Chinook salmon sampled at the Landsberg Da (Cedar River, WA) in 2010, 2011, and 2014. Each row contains information on one sampled fish.

Distribution 3

CC ID: 848655
Start Date: 2018-02-05
End Date: Present
Download URL: https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/tables/table/chinook_genotypes_cedar_river_2010_2011_and_2014
Distributor: Northwest Fisheries Science Center (NWFSC) (2015-10-01 - Present)
File Name: Chinook Genotypes Cedar River 2010, 2011, and 2014
Description:

Single nucleotide polymorphism (SNP) data from Chinook salmon sampled at Landsberg Dam on the Cedar River, WA, in 2010, 2011, and 2014 Each row in the table contains the genotype of an individual fish for 96 SNP loci.

Distribution 4

CC ID: 848657
Start Date: 2018-02-05
End Date: Present
Download URL: https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/tables/table/chinook_phenotypes_cedar_river_2010_2011_and_2014
Distributor: Northwest Fisheries Science Center (NWFSC) (2015-10-01 - Present)
File Name: Chinook Phenotypes Cedar River 2010, 2011, and 201
Description:

Sampling information for Chinook salmon sampled at the Landsberg Da (Cedar River, WA) in 2010, 2011, and 2014. Each row contains information on one sampled fish.

URLs

URL 1

CC ID: 848659
URL: https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/datasets/dataset/94979
Name: Cedar River Chinook genotypes
URL Type:
Online Resource
File Resource Format: Web site
Description:

NWFSC Dataset Information page. Genotypes and associated phenotypes for Cedar River Chinook salmon

Data Quality

Quality Control Procedures Employed:

These data were collected and processed in accordance with established protocols and best practices under the direction of the project’s Principal Investigator. Contact the dataset Data Manager in section 3 for full QA/QC methodology.

Data Management

Have Resources for Management of these Data Been Identified?: No
Approximate Percentage of Budget for these Data Devoted to Data Management: 0
Do these Data Comply with the Data Access Directive?: No
Is Access to the Data Limited Based on an Approved Waiver?: No
If Distributor (Data Hosting Service) is Needed, Please Indicate: No
Approximate Delay Between Data Collection and Dissemination: 0 days
If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed:

No Delay

Actual or Planned Long-Term Data Archive Location: NCEI-MD
Approximate Delay Between Data Collection and Archiving: 365
How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive?:

The Northwest Fisheries Science Center facilitates backup and recovery of all data and IT components which are managed by IT Operations through the capture of static (point-in-time) backup data to physical media. Once data is captured to physical media (every 1-3 days), a duplicate is made and routinely (weekly) transported to an offsite archive facility where it is maintained throughout the data's applicable life-cycle.

Lineage

Lineage Statement:

DNA genotyping: These data were collected and processed in accordance with established protocols and best practices under the direction of the project’s Principal Investigator. Contact the dataset Data Manager for full QA/QC methodology.

Child Items

Rubric scores updated every 15m

Rubric Score Type Title
Entity Chinook Genotypes Cedar River 2010, 2011, and 2014
Entity Chinook Phenotypes Cedar River 2010, 2011, and 2014

Catalog Details

Catalog Item ID: 30846
GUID: gov.noaa.nmfs.inport:30846
Metadata Record Created By: Jeffrey W Cowen
Metadata Record Created: 2016-02-23 16:11+0000
Metadata Record Last Modified By: SysAdmin InPortAdmin
Metadata Record Last Modified: 2022-08-09 17:11+0000
Metadata Record Published: 2019-06-04
Owner Org: NWFSC
Metadata Publication Status: Published Externally
Do Not Publish?: N
Metadata Last Review Date: 2019-06-04
Metadata Review Frequency: 1 Year
Metadata Next Review Date: 2020-06-04