Data Management Plan (Deprecated)
GUID: gov.noaa.nmfs.inport:36615 | Published / External
This is an outdated version of the NOAA Data Management Plan template. InPort now supports a dedicated Data Management Plan Catalog Item type, which is up-to-date with the latest NOAA DMP template. The ability to generate Data Management Plans from Data Sets will be discontinued in a future release. Please see the Data Management Plan Help Guide to learn more.
Data Management Plan
DMP Template v2.0.1 (2015-01-01)
Please provide the following information, and submit to the NOAA DM Plan Repository.Reference to Master DM Plan (if applicable)
As stated in Section IV, Requirement 1.3, DM Plans may be hierarchical. If this DM Plan inherits provisions from a higher-level DM Plan already submitted to the Repository, then this more-specific Plan only needs to provide information that differs from what was provided in the Master DM Plan.
1. General Description of Data to be Managed
Juvenile red and blue king crabs (Paralithodes camtschaticus and P. platypus) were exposed to three pH levels: ambient (pH 8.1), pH 7.8, and pH 7.5 for three weeks. Oxygen consumption and feeding ration were determined immediately after exposure to treatment water and after three weeks exposure. Growth can be calculated from the wet mass observations.
Notes: Only a maximum of 4000 characters will be included.
Notes: Data collection is considered ongoing if a time frame of type "Continuous" exists.
Notes: All time frames from all extent groups are included.
Kodiak Laboratory
Notes: All geographic areas from all extent groups are included.
(e.g., digital numeric data, imagery, photographs, video, audio, database, tabular data, etc.)
(e.g., satellite, airplane, unmanned aerial system, radar, weather station, moored buoy, research vessel, autonomous underwater vehicle, animal tagging, manual surveys, enforcement activities, numerical model, etc.)
2. Point of Contact for this Data Management Plan (author or maintainer)
Notes: The name of the Person of the most recent Support Role of type "Metadata Contact" is used. The support role must be in effect.
Notes: The name of the Organization of the most recent Support Role of type "Metadata Contact" is used. This field is required if applicable.
3. Responsible Party for Data Management
Program Managers, or their designee, shall be responsible for assuring the proper management of the data produced by their Program. Please indicate the responsible party below.
Notes: The name of the Person of the most recent Support Role of type "Data Steward" is used. The support role must be in effect.
4. Resources
Programs must identify resources within their own budget for managing the data they produce.
5. Data Lineage and Quality
NOAA has issued Information Quality Guidelines for ensuring and maximizing the quality, objectivity, utility, and integrity of information which it disseminates.
(describe or provide URL of description):
Process Steps:
- During the experiment, crabs were held in individual cells made out of PVC pipe with mesh bottoms that were placed in three larger experimental tubs. Cells each received flow-through water and were large enough to not cause stress to the animals. Crab were fed Gelly Belly (above) three times a week to excess during the experiment. The temperature was maintained at 5°C, which is well within the thermal tolerance range for both species (Long and Daly in review), in each tub using a recirculating chiller. Each of the tubs was fed with flow through seawater at one of three pHs. To acidify seawater, CO2 was bubbled into seawater to reduce the pH to 5.5. This water was mixed with ambient filtered seawater into treatment head tanks. The flow rate of pH 5.5 water was controlled via feedback from pH probes in the head tanks that adjusted the speed of peristaltic pumps. Three pH treatments were used, ambient (pH ~8.1), pH 7.8 (pH expected in global surface waters in ~2100) and pH 7.5 (~2200). The pH and temperature were measured in a randomly selected cell in each treatment once a day using a Durafet III pH probe that was calibrated daily in TRIS buffer. Weekly water samples from each treatment were taken, poisoned with mercuric chloride, and sent to an analytic laboratories for dissolved inorganic carbon (DIC) and total alkalinity (TA) analysis. DIC and TA were determined using a VINDTA 3C (Marianda, Kiel, Germany) coupled to a 5012 Coulometer (UIC Inc., Joliet, IL) using Certified Reference Material from the Dickson Laboratory.
- In this experiment, we measured respiration and feeding ration crabs both immediately after exposure to treatment water and after 3 weeks acclimation period in treatment water. Three weeks exposure time was selected, in part, because, after that, the mortality rate of juveniles in the lowest pH treatment was likely to result in too low a sample size. Sample size was 6 crabs per species per treatment except for red king crab at pH 7.5 which we increased to 10 crabs in anticipation of a higher mortality rate at that treatment. As no more than five respirometry measurements could be made per day, trials for individual crabs were staggered and crabs were started in a random order. Part way through beginning the experiment, an equipment failure caused mass mortality in the pH 7.5 treatment. The affected crabs were replaced with new one and the initial respiration/feeding trials re-run. Each crab was starved for 1 day prior to measuring the respiration and feeding ration to standardize hunger levels. Each day the respiration trials for that day would be performed and the crabs placed into their cells in the experimental tubs. Respiration was measured in a 5 ml Plexiglas cell with an integrated Clark electrode oxygen sensor that recorded the O2 concentration continually. The sensor was calibrated daily with a two point calibration procedure. The cell was jacketed in by a secondary chamber that allowed flow-through water to maintain the cell at a constant temperature and the whole apparatus was placed inside a temperature controlled room at 5°C. To measure respiration rates, crabs were placed into the cell with a known volume of water at the treatment pH. Trials were run for 1.25-1.5 h. Immediately after the trial the crab was removed from the chamber it was blotted dry and the wet mass was determined. The rate of oxygen consumption in the cell was determined by determining the slope of the oxygen concentration over time once the trend became linear and was normalizing to the mass of each crab. After the respiration trials, the crab were placed in their holding cells in the experimental tubs. Feeding ration was determined the same day as respiration measurements were taken. A pre-massed piece of squid mantle (blotted dry) ~50% of the mass of the crabs was placed into each cell and the crab was allowed to feed for 24 h after which the remaining food was collected, blotted dry, and massed. As the red king crab were smaller than the blue king crab the mass of food given to each species differed accordingly. Control trials without crabs were performed in each pH treatment for each species (to account for any potential difference in the initial mass of the samples) with 3 replicates of each pH/species combination. On average, the mass of squid increased by 0.8 ± 7.8% (SE) and did not differ among either pH treatments (2-way ANOVA, F2,13 = 0.184, p = 0.834) or species (2-way ANOVA, F1,13 = 1.318, p = 0.272) so the overall mean was used when calculating the feeding ration. The mass of food consumed was determined and the feeding ration calculated as the percent of the crab’s mass consumed corrected for mass change in control trials. The crabs were held in their treatment water for ~21 days (range 20-24 d) and checked daily for moults or mortalities. Then the respiration and feeding ration for each crab was determined a second time in the same way as above.
- The pH treatment the crab was in or the observation was made in. Control = pH of ambient water coming into the Kodiak Lab; pH 7.8- water adjusted to a pH 0f 7.8 with CO2. pH 7.5- water adjusted to a pH of 7.5 pH was taken using Durafet pH probe, accuracy between 0.01 and 0.03. Salinity values represented in practical salinity units. Blank cells indicate no data was taken or missing data. Alkalinity values represented in micromoles per kilogram. Blank cells indicate no data was taken or missing data. DIC (dissolved inorganic carbon) is also known as the total CO2 and is represented in micromoles per kilogram. Blank cells indicate no data was taken or missing data. Species: BKC = blue king crab; RKC = red king crab. Time Indicates whether the measurement was made at the beginning (Initial) or end (Final) of the experiment. Initial = measurement made immediately after crab was exposed to treatment water. Final = measurement made after crab was exposed to treatment water for approximately 3 weeks.
(describe or provide URL of description):
unknown
6. Data Documentation
The EDMC Data Documentation Procedural Directive requires that NOAA data be well documented, specifies the use of ISO 19115 and related standards for documentation of new data, and provides links to resources and tools for metadata creation and validation.
Missing/invalid information:
- 1.7. Data collection method(s)
- 7.2. Name of organization of facility providing data access
(describe or provide URL of description):
7. Data Access
NAO 212-15 states that access to environmental data may only be restricted when distribution is explicitly limited by law, regulation, policy (such as those applicable to personally identifiable information or protected critical infrastructure information or proprietary trade information) or by security requirements. The EDMC Data Access Procedural Directive contains specific guidance, recommends the use of open-standard, interoperable, non-proprietary web services, provides information about resources and tools to enable data access, and includes a Waiver to be submitted to justify any approach other than full, unrestricted public access.
There are no legal restrictions on access to the data. They reside in public domain and can be freely distributed.
Notes: The name of the Organization of the most recent Support Role of type "Distributor" is used. The support role must be in effect. This information is not required if an approved access waiver exists for this data.
Notes: This field is required if a Distributor has not been specified.
Notes: All URLs listed in the Distribution Info section will be included. This field is required if applicable.
unknown
no delay
Notes: This field is required if applicable.
8. Data Preservation and Protection
The NOAA Procedure for Scientific Records Appraisal and Archive Approval describes how to identify, appraise and decide what scientific records are to be preserved in a NOAA archive.
(Specify NCEI-MD, NCEI-CO, NCEI-NC, NCEI-MS, World Data Center (WDC) facility, Other, To Be Determined, Unable to Archive, or No Archiving Intended)
Notes: This field is required if archive location is World Data Center or Other.
Notes: This field is required if archive location is To Be Determined, Unable to Archive, or No Archiving Intended.
Notes: Physical Location Organization, City and State are required, or a Location Description is required.
Discuss data back-up, disaster recovery/contingency planning, and off-site data storage relevant to the data collection
IT Security and Contingency Plan for the system establishes procedures and applies to the functions, operations, and resources necessary to recover and restore data as hosted in the Western Regional Support Center in Seattle, Washington, following a disruption.
9. Additional Line Office or Staff Office Questions
Line and Staff Offices may extend this template by inserting additional questions in this section.