View: V0_CORAL_DZ_OBS_A
Entity (ENT) | Pacific Islands Fisheries Science Center (PIFSC)GUID: gov.noaa.nmfs.inport:50867 | Updated: August 9, 2022 | Published / External
Item Identification
Title: | View: V0_CORAL_DZ_OBS_A |
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Short Name: | V0_CORAL_DZ_OBS_A |
Status: | Completed |
Abstract: |
Coral belt disease observations |
Entity Information
Entity Type: | Data View |
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Active Version?: | Yes |
Schema Name: | GISDAT |
Description: |
Coral belt disease observations |
Data Attributes
Attribute Summary
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Name | Type | Description |
---|---|---|---|---|
100
|
ROUNDID | NUMBER | Unique numeric id for mission | |
100
|
MISSIONID | VARCHAR2 | Unique text id for mission | |
100
|
REGION | VARCHAR2 | Region code representing one of the five Pacific Island regions surveyed by the Coral Reef Ecosystem Program | |
100
|
REGION_NAME | VARCHAR2 | One of the five Pacific Island regions surveyed by the Coral Reef Ecosystem Program (Main Hawaiian Islands) | |
100
|
ISLAND | NVARCHAR2 | Island or atoll surveyed (Oahu, Maui, Hawaii) | |
100
|
ISLANDCODE | NVARCHAR2 | 3-letter island code (OAH, MAI, HAW) | |
100
|
SITE | NVARCHAR2 | The code for the site surveyed. Combines a 3-letter island code with a 2-4 digit site number | |
100
|
LATITUDE | NUMBER | Latitude in decimal degrees, WGS84, for the given site | |
100
|
LONGITUDE | NUMBER | Longitude in decimal degrees, WGS84 for the given site | |
100
|
SITEVISITID | NUMBER | Unique Identifier for SITE_VISIT record (unique for site and date) | |
100
|
DATE_ | DATE | Date the survey was conducted | |
100
|
OBS_YEAR | NUMBER | Year the survey was conducted | |
100
|
DIVER | NVARCHAR2 | Initials of diver that conducted the survey | |
100
|
DZTRANSECTRUN | NUMBER | Primary key for CORAL_DZ_TRANSECTRUN | |
100
|
TRANLENGTH | NUMBER | Transect Length (12.5 to 25 m) | |
100
|
TRANWIDTH | NUMBER | Transect Width (1, 2 or 4 m) | |
100
|
MINDEPTH | NUMBER | Minimum depth of transect (3 - 48 ft) | |
100
|
MAXDEPTH | NUMBER | Maximum depth of transect (3 - 48 ft) | |
100
|
TAXONCODE | NVARCHAR2 | Organism observed (code) | |
100
|
TAXONNAME | NVARCHAR2 | Taxonomic name to lowest level identified | |
100
|
PHYLUM | VARCHAR2 | Phylum Taxonomic Rank | |
100
|
CLASS | NVARCHAR2 | Class Taxonomic Rank | |
100
|
S_ORDER | VARCHAR2 | Order Taxonomic Rank | |
100
|
FAMILY | VARCHAR2 | Family Taxonomic Rank | |
100
|
GENUS | NVARCHAR2 | Genus Taxonomic Rank | |
100
|
SCIENTIFIC_NAME | VARCHAR2 | Species Taxonomic Rank. Only populated if organism identified to species (see RANK). | |
100
|
RANK | VARCHAR2 | Rank from WoRMS (World Register of Marine Species). | |
100
|
APHIAID | VARCHAR2 | Aphia ID from WoRMS. Only populated if organism identified to species (see RANK). | |
100
|
LENGTH | NUMBER | Colony length (cm). Colony size not always captured by SCUBA divers if survey/allowed bottom time did not permit. | |
100
|
WIDTH | NUMBER | Colony width (cm). Colony size not always captured by SCUBA divers if survey/allowed bottom time did not permit. | |
100
|
DZCODE | VARCHAR2 | Disease code for 15 different types of diseases and afflictions affecting corals: ALG=Algal Infection BIN=Barnacle Infestation BLE=Environmental / Thermal Bleaching CIL=Ciliates CYA=Cyanophyte Infection DIS=Discolorations other than Bleaching FUG=Endolithic Fungal Infection OTH=Other PDS=Porites Discolored Swelling PRE=Predation PRS=Pigmentation Response PTR=Porites Trematodiasis SGA=Skeletal Growth Anomalies TLS=Sub-acute Tissue Loss WSY=Acute Tissue Loss - White Syndrome | |
100
|
DISEASE | VARCHAR2 | Disease category: AL = algal or cyanophyte infections, DZ = coral diseases (ciliates, endolithic fungal infections, skeletal growth anomalies, tissue loss), PR = predation, BL = bleaching, and OT = other type of afflictions such as infestations, discolorations, pigmentation response, and Porites Trematodiasis. | |
100
|
SEVERITY | NUMBER | Severity of bleaching observed (1-5). Only recorded if bleaching was observed (not in all cases). Severity of 1 = mild (1-10%), 2 = moderate (11-25%), 3 = marked (26-50%), 4 = severe (51-75%), and 5 = acute (76-100%). | |
100
|
COMMENTS | VARCHAR2 | Comments regarding disease observations | |
100
|
TRANSECT | NUMBER | Transect Number (1 or 2) |
Attribute Details
ROUNDID
Seq. Order: | 1 |
---|---|
Data Storage Type: | NUMBER |
Max Length: | 22 |
Required: | Yes |
Primary Key: | No |
Precision: | 28 |
Scale: | 0 |
Status: | Active |
Description: |
Unique numeric id for mission |
MISSIONID
Seq. Order: | 2 |
---|---|
Data Storage Type: | VARCHAR2 |
Max Length: | 30 |
Required: | Yes |
Primary Key: | No |
Status: | Active |
Description: |
Unique text id for mission |
REGION
Seq. Order: | 3 |
---|---|
Data Storage Type: | VARCHAR2 |
Max Length: | 20 |
Required: | Yes |
Primary Key: | No |
Status: | Active |
Description: |
Region code representing one of the five Pacific Island regions surveyed by the Coral Reef Ecosystem Program |
REGION_NAME
Seq. Order: | 4 |
---|---|
Data Storage Type: | VARCHAR2 |
Max Length: | 30 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
One of the five Pacific Island regions surveyed by the Coral Reef Ecosystem Program (Main Hawaiian Islands) |
ISLAND
Seq. Order: | 5 |
---|---|
Data Storage Type: | NVARCHAR2 |
Max Length: | 150 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Island or atoll surveyed (Oahu, Maui, Hawaii) |
ISLANDCODE
Seq. Order: | 6 |
---|---|
Data Storage Type: | NVARCHAR2 |
Max Length: | 15 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
3-letter island code (OAH, MAI, HAW) |
SITE
Seq. Order: | 7 |
---|---|
Data Storage Type: | NVARCHAR2 |
Max Length: | 150 |
Required: | Yes |
Primary Key: | No |
Status: | Active |
Description: |
The code for the site surveyed. Combines a 3-letter island code with a 2-4 digit site number |
LATITUDE
Seq. Order: | 8 |
---|---|
Data Storage Type: | NUMBER |
Max Length: | 22 |
Required: | No |
Primary Key: | No |
Precision: | 38 |
Status: | Active |
Description: |
Latitude in decimal degrees, WGS84, for the given site |
LONGITUDE
Seq. Order: | 9 |
---|---|
Data Storage Type: | NUMBER |
Max Length: | 22 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Longitude in decimal degrees, WGS84 for the given site |
SITEVISITID
Seq. Order: | 12 |
---|---|
Data Storage Type: | NUMBER |
Max Length: | 22 |
Required: | Yes |
Primary Key: | No |
Status: | Active |
Description: |
Unique Identifier for SITE_VISIT record (unique for site and date) |
DATE_
Seq. Order: | 13 |
---|---|
Data Storage Type: | DATE |
Max Length: | 7 |
Required: | Yes |
Primary Key: | No |
Status: | Active |
Description: |
Date the survey was conducted |
OBS_YEAR
Seq. Order: | 14 |
---|---|
Data Storage Type: | NUMBER |
Max Length: | 22 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Year the survey was conducted |
DIVER
Seq. Order: | 15 |
---|---|
Data Storage Type: | NVARCHAR2 |
Max Length: | 150 |
Required: | Yes |
Primary Key: | No |
Status: | Active |
Description: |
Initials of diver that conducted the survey |
DZTRANSECTRUN
Seq. Order: | 16 |
---|---|
Data Storage Type: | NUMBER |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Primary key for CORAL_DZ_TRANSECTRUN |
TRANLENGTH
Seq. Order: | 18 |
---|---|
Data Storage Type: | NUMBER |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Transect Length (12.5 to 25 m) |
TRANWIDTH
Seq. Order: | 19 |
---|---|
Data Storage Type: | NUMBER |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Transect Width (1, 2 or 4 m) |
MINDEPTH
Seq. Order: | 20 |
---|---|
Data Storage Type: | NUMBER |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Minimum depth of transect (3 - 48 ft) |
MAXDEPTH
Seq. Order: | 21 |
---|---|
Data Storage Type: | NUMBER |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Maximum depth of transect (3 - 48 ft) |
TAXONCODE
Seq. Order: | 22 |
---|---|
Data Storage Type: | NVARCHAR2 |
Max Length: | 150 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Organism observed (code) |
TAXONNAME
Seq. Order: | 23 |
---|---|
Data Storage Type: | NVARCHAR2 |
Max Length: | 765 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Taxonomic name to lowest level identified |
PHYLUM
Seq. Order: | 24 |
---|---|
Data Storage Type: | VARCHAR2 |
Max Length: | 255 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Phylum Taxonomic Rank |
CLASS
Seq. Order: | 25 |
---|---|
Data Storage Type: | NVARCHAR2 |
Max Length: | 60 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Class Taxonomic Rank |
S_ORDER
Seq. Order: | 26 |
---|---|
Data Storage Type: | VARCHAR2 |
Max Length: | 255 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Order Taxonomic Rank |
FAMILY
Seq. Order: | 27 |
---|---|
Data Storage Type: | VARCHAR2 |
Max Length: | 255 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Family Taxonomic Rank |
GENUS
Seq. Order: | 28 |
---|---|
Data Storage Type: | NVARCHAR2 |
Max Length: | 300 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Genus Taxonomic Rank |
SCIENTIFIC_NAME
Seq. Order: | 29 |
---|---|
Data Storage Type: | VARCHAR2 |
Max Length: | 255 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Species Taxonomic Rank. Only populated if organism identified to species (see RANK). |
RANK
Seq. Order: | 30 |
---|---|
Data Storage Type: | VARCHAR2 |
Max Length: | 20 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Rank from WoRMS (World Register of Marine Species). |
APHIAID
Seq. Order: | 31 |
---|---|
Data Storage Type: | VARCHAR2 |
Max Length: | 20 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Aphia ID from WoRMS. Only populated if organism identified to species (see RANK). |
LENGTH
Seq. Order: | 32 |
---|---|
Data Storage Type: | NUMBER |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Colony length (cm). Colony size not always captured by SCUBA divers if survey/allowed bottom time did not permit. |
WIDTH
Seq. Order: | 33 |
---|---|
Data Storage Type: | NUMBER |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Colony width (cm). Colony size not always captured by SCUBA divers if survey/allowed bottom time did not permit. |
DZCODE
Seq. Order: | 34 |
---|---|
Data Storage Type: | VARCHAR2 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Disease code for 15 different types of diseases and afflictions affecting corals: ALG=Algal Infection BIN=Barnacle Infestation BLE=Environmental / Thermal Bleaching CIL=Ciliates CYA=Cyanophyte Infection DIS=Discolorations other than Bleaching FUG=Endolithic Fungal Infection OTH=Other PDS=Porites Discolored Swelling PRE=Predation PRS=Pigmentation Response PTR=Porites Trematodiasis SGA=Skeletal Growth Anomalies TLS=Sub-acute Tissue Loss WSY=Acute Tissue Loss - White Syndrome |
DISEASE
Seq. Order: | 35 |
---|---|
Data Storage Type: | VARCHAR2 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Disease category: AL = algal or cyanophyte infections, DZ = coral diseases (ciliates, endolithic fungal infections, skeletal growth anomalies, tissue loss), PR = predation, BL = bleaching, and OT = other type of afflictions such as infestations, discolorations, pigmentation response, and Porites Trematodiasis. |
SEVERITY
Seq. Order: | 36 |
---|---|
Data Storage Type: | NUMBER |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Severity of bleaching observed (1-5). Only recorded if bleaching was observed (not in all cases). Severity of 1 = mild (1-10%), 2 = moderate (11-25%), 3 = marked (26-50%), 4 = severe (51-75%), and 5 = acute (76-100%). |
COMMENTS
Seq. Order: | 37 |
---|---|
Data Storage Type: | VARCHAR2 |
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Comments regarding disease observations |
TRANSECT
Data Storage Type: | NUMBER |
---|---|
Required: | No |
Primary Key: | No |
Status: | Active |
Description: |
Transect Number (1 or 2) |
Catalog Details
Catalog Item ID: | 50867 |
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GUID: | gov.noaa.nmfs.inport:50867 |
Metadata Record Created By: | Troy T Kanemura |
Metadata Record Created: | 2017-12-22 14:52+0000 |
Metadata Record Last Modified By: | SysAdmin InPortAdmin |
Metadata Record Last Modified: | 2022-08-09 17:11+0000 |
Metadata Record Published: | 2017-12-22 |
Owner Org: | PIFSC |
Metadata Publication Status: | Published Externally |
Do Not Publish?: | N |
Metadata Last Review Date: | 2017-12-22 |
Metadata Review Frequency: | 1 Year |
Metadata Next Review Date: | 2018-12-22 |