Search Help Show/Hide Menu
Metadata Rubric
100%
6 / 6
View Report
NWFSC Metadata Library > EFS (Environmental and Fisheries Sciences) Divi... > Migrated from Resource Enhancement and Utilizat... > Sablefish GI microbiome & histology - Incorpora... >

Comparative bacterial and archaeal gastrointestinal abundances from sablefish on different diets

Entity (ENT)  |  Northwest Fisheries Science Center (NWFSC)
GUID: gov.noaa.nmfs.inport:56814  |  Updated: August 9, 2022  |  Published / External 
Summary
Item Identification
Entity Info
Data Attributes
Catalog Details

Summary

Abstract

These data were derived from a feeding study with juvenile sablefish, comparing plant-based feeds (flax, corn) with fish-based feed (reference). Intestinal microbiomes were determined by hybridization of a gastronintesntial DNA microarray.

Description

These data were derived from a feeding study with juvenile sablefish, comparing plant-based feeds (flax, corn) with fish-based feed (reference). Intestinal microbiomes were determined by hybridization of a gastronintesntial DNA microarray.

Entity Information

Entity Type
Spreadsheet

Data Attribute / Type Description
phylum
text 		bacterial or archaeal phylum name. Units for values are NA.
class
text 		bacterial or archaeal class name. Units for values are NA.
order
text 		bacterial or archaeal order name. Units for values are NA.
family
text 		bacterial or archaeal family name. Units for values are NA.
genus
text 		bacterial or archaeal genus name. Units for values are NA.
species
text 		bacterial or archaeal species name. Units for values are NA.
representative_gene
text 		DNA sequence representative of taxon. Units for values are NA.
49b
number 		relative within-sample abundance for taxon. Units for values are NA.
50b
number 		relative within-sample abundance for taxon. Units for values are NA.
53b
number 		relative within-sample abundance for taxon. Units for values are NA.
59b
number 		relative within-sample abundance for taxon. Units for values are NA.
60b
number 		relative within-sample abundance for taxon. Units for values are NA.
72b
number 		relative within-sample abundance for taxon. Units for values are NA.
74b
number 		relative within-sample abundance for taxon. Units for values are NA.
77b.1
number 		relative within-sample abundance for taxon. Units for values are NA.
77b.2
number 		relative within-sample abundance for taxon. Units for values are NA.
78b
number 		relative within-sample abundance for taxon. Units for values are NA.
79b
number 		relative within-sample abundance for taxon. Units for values are NA.
80b
number 		relative within-sample abundance for taxon. Units for values are NA.
84b
number 		relative within-sample abundance for taxon. Units for values are NA.
corn
number 		relative within-sample abundance for taxon. Units for values are NA.
flax
number 		relative within-sample abundance for taxon. Units for values are NA.
ref
number 		relative within-sample abundance for taxon. Units for values are NA.
56a
number 		relative within-sample abundance for taxon. Units for values are NA.
74a
number 		relative within-sample abundance for taxon. Units for values are NA.
54c
number 		relative within-sample abundance for taxon. Units for values are NA.
56c
number 		relative within-sample abundance for taxon. Units for values are NA.
60c
number 		relative within-sample abundance for taxon. Units for values are NA.
70c
number 		relative within-sample abundance for taxon. Units for values are NA.
71c
number 		relative within-sample abundance for taxon. Units for values are NA.
77c
number 		relative within-sample abundance for taxon. Units for values are NA.
79c
number 		relative within-sample abundance for taxon. Units for values are NA.
80c
number 		relative within-sample abundance for taxon. Units for values are NA.

Child Items

No Child Items for this record.

Contact Information

No contact information is available for this record.

Please contact the owner organization (NWFSC) for inquiries on this record.

Item Identification

Title: Comparative bacterial and archaeal gastrointestinal abundances from sablefish on different diets
Short Name: Comparative bacterial and archaeal gastrointestinal abundances from sablefish on different diets
Status: Planned
Abstract:

These data were derived from a feeding study with juvenile sablefish, comparing plant-based feeds (flax, corn) with fish-based feed (reference). Intestinal microbiomes were determined by hybridization of a gastronintesntial DNA microarray.

Entity Information

Entity Type: Spreadsheet
Active Version?: Yes
Schema Name: PARR
Description:

These data were derived from a feeding study with juvenile sablefish, comparing plant-based feeds (flax, corn) with fish-based feed (reference). Intestinal microbiomes were determined by hybridization of a gastronintesntial DNA microarray.

Data Attributes

Attribute Summary

Rubric Score Primary Key? Name Type Description
100
 phylum text bacterial or archaeal phylum name. Units for values are NA.
100
 class text bacterial or archaeal class name. Units for values are NA.
100
 order text bacterial or archaeal order name. Units for values are NA.
100
 family text bacterial or archaeal family name. Units for values are NA.
100
 genus text bacterial or archaeal genus name. Units for values are NA.
100
 species text bacterial or archaeal species name. Units for values are NA.
100
 representative_gene text DNA sequence representative of taxon. Units for values are NA.
100
 49b number relative within-sample abundance for taxon. Units for values are NA.
100
 50b number relative within-sample abundance for taxon. Units for values are NA.
100
 53b number relative within-sample abundance for taxon. Units for values are NA.
100
 59b number relative within-sample abundance for taxon. Units for values are NA.
100
 60b number relative within-sample abundance for taxon. Units for values are NA.
100
 72b number relative within-sample abundance for taxon. Units for values are NA.
100
 74b number relative within-sample abundance for taxon. Units for values are NA.
100
 77b.1 number relative within-sample abundance for taxon. Units for values are NA.
100
 77b.2 number relative within-sample abundance for taxon. Units for values are NA.
100
 78b number relative within-sample abundance for taxon. Units for values are NA.
100
 79b number relative within-sample abundance for taxon. Units for values are NA.
100
 80b number relative within-sample abundance for taxon. Units for values are NA.
100
 84b number relative within-sample abundance for taxon. Units for values are NA.
100
 corn number relative within-sample abundance for taxon. Units for values are NA.
100
 flax number relative within-sample abundance for taxon. Units for values are NA.
100
 ref number relative within-sample abundance for taxon. Units for values are NA.
100
 56a number relative within-sample abundance for taxon. Units for values are NA.
100
 74a number relative within-sample abundance for taxon. Units for values are NA.
100
 54c number relative within-sample abundance for taxon. Units for values are NA.
100
 56c number relative within-sample abundance for taxon. Units for values are NA.
100
 60c number relative within-sample abundance for taxon. Units for values are NA.
100
 70c number relative within-sample abundance for taxon. Units for values are NA.
100
 71c number relative within-sample abundance for taxon. Units for values are NA.
100
 77c number relative within-sample abundance for taxon. Units for values are NA.
100
 79c number relative within-sample abundance for taxon. Units for values are NA.
100
 80c number relative within-sample abundance for taxon. Units for values are NA.

Attribute Details

phylum

CC ID: 859307
Seq. Order: 1
Data Storage Type: text
Required: Yes
Primary Key: No
Status: Active
Description:

bacterial or archaeal phylum name. Units for values are NA.
General Data Type: text
Unit of Measure: NA
Allowed Values: NA

class

CC ID: 859308
Seq. Order: 2
Data Storage Type: text
Required: Yes
Primary Key: No
Status: Active
Description:

bacterial or archaeal class name. Units for values are NA.
General Data Type: text
Unit of Measure: NA
Allowed Values: NA

order

CC ID: 859309
Seq. Order: 3
Data Storage Type: text
Required: Yes
Primary Key: No
Status: Active
Description:

bacterial or archaeal order name. Units for values are NA.
General Data Type: text
Unit of Measure: NA
Allowed Values: NA

family

CC ID: 859310
Seq. Order: 4
Data Storage Type: text
Required: Yes
Primary Key: No
Status: Active
Description:

bacterial or archaeal family name. Units for values are NA.
General Data Type: text
Unit of Measure: NA
Allowed Values: NA

genus

CC ID: 859311
Seq. Order: 5
Data Storage Type: text
Required: Yes
Primary Key: No
Status: Active
Description:

bacterial or archaeal genus name. Units for values are NA.
General Data Type: text
Unit of Measure: NA
Allowed Values: NA

species

CC ID: 859312
Seq. Order: 6
Data Storage Type: text
Required: Yes
Primary Key: No
Status: Active
Description:

bacterial or archaeal species name. Units for values are NA.
General Data Type: text
Unit of Measure: NA
Allowed Values: NA

representative_gene

CC ID: 859313
Seq. Order: 7
Data Storage Type: text
Required: Yes
Primary Key: No
Scale: 0
Status: Active
Description:

DNA sequence representative of taxon. Units for values are NA.
General Data Type: text
Unit of Measure: NA
Allowed Values: CATG

49b

CC ID: 859314
Seq. Order: 8
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

50b

CC ID: 859315
Seq. Order: 9
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

53b

CC ID: 859316
Seq. Order: 10
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

59b

CC ID: 859317
Seq. Order: 11
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

60b

CC ID: 859318
Seq. Order: 12
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

72b

CC ID: 859319
Seq. Order: 13
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

74b

CC ID: 859320
Seq. Order: 14
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

77b.1

CC ID: 859321
Seq. Order: 15
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

77b.2

CC ID: 859322
Seq. Order: 16
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

78b

CC ID: 859323
Seq. Order: 17
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

79b

CC ID: 859324
Seq. Order: 18
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

80b

CC ID: 859325
Seq. Order: 19
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

84b

CC ID: 859326
Seq. Order: 20
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

corn

CC ID: 859327
Seq. Order: 21
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

flax

CC ID: 859328
Seq. Order: 22
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

ref

CC ID: 859329
Seq. Order: 23
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

56a

CC ID: 859330
Seq. Order: 24
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

74a

CC ID: 859331
Seq. Order: 25
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

54c

CC ID: 859332
Seq. Order: 26
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

56c

CC ID: 859333
Seq. Order: 27
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

60c

CC ID: 859334
Seq. Order: 28
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

70c

CC ID: 859335
Seq. Order: 29
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

71c

CC ID: 859336
Seq. Order: 30
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

77c

CC ID: 859337
Seq. Order: 31
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

79c

CC ID: 859338
Seq. Order: 32
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

80c

CC ID: 859339
Seq. Order: 33
Data Storage Type: number
Required: No
Primary Key: No
Scale: 0
Status: Active
Description:

relative within-sample abundance for taxon. Units for values are NA.
General Data Type: number
Unit of Measure: NA
Allowed Values: 0 - 720

Catalog Details

Catalog Item ID: 56814
GUID: gov.noaa.nmfs.inport:56814
Metadata Record Created By: Jeffrey W Cowen
Metadata Record Created: 2019-07-02 13:44+0000
Metadata Record Last Modified By: SysAdmin InPortAdmin
Metadata Record Last Modified: 2022-08-09 17:11+0000
Metadata Record Published: 2019-07-02
Owner Org: NWFSC
Metadata Publication Status: Published Externally
Do Not Publish?: N
Metadata Last Review Date: 2019-07-02
Metadata Review Frequency: 1 Year
Metadata Next Review Date: 2020-07-02