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PIFSC Metadata Library > PIFSC Coral Reef Ecosystem Program (CREP) Metad... > Structure From Motion > Structure from Motion (SfM) Coral Vital Rates A... >

SfM Fixed Sites: SfM Derived Coral Annotations

Entity (ENT)  |  Pacific Islands Fisheries Science Center (PIFSC)
GUID: gov.noaa.nmfs.inport:63094  |  Updated: September 11, 2023  |  Published / External 
Summary
Item Identification
Entity Info
Data Attributes
Catalog Details

Summary

Abstract

Data dictionary for SfM-derived coral annotations within fixed sites.

Description

Data dictionary for SfM-derived coral annotations within fixed sites.

Entity Information

Entity Type
Spreadsheet

Data Attribute / Type Description
Site
TEXT 		9-character code for the site surveyed. Combines a 3-letter island code, 3-letter code for team that collected the raw imagery, and 3-letter site name.
Island
TEXT 		Name of island or atoll surveyed.
Island_Code
TEXT 		3-letter code for Island.
Latitude
NUMERIC 		Latitude in decimal degrees, WGS84, for the given Site.
Longitude
NUMERIC 		Longitude in decimal degrees, WGS84 for the given site.
StartingDate
DATE 		Local date that the initial survey was conducted. For the Hawaii dataset, imagery collected on StartingDate is used to calculate StartingSize.
EndingDate
DATE 		Local date that the final survey was conducted. For the Hawaii dataset, imagery collected on EndingDate is used to calculate EndingSize.
Date
DATE 		The date of image collection in DD/MM/YYYY format.
DataorError
TEXT 		References method of data collection. DATA: Imagery of the same site were collected > 1 year apart. StartingSize and EndingSize are annotated within time points > 1 year apart. SAME.AN_DIFF.IM: StartingSize and EndingSize are annotated by the same annotator, but using different imagery collected < 1 day apart. DIFF.AN_SAME.IM: StartingSize and EndingSize are annotated by different annotators using the same imagery. DIFF.AN_DIFF.IM: StartingSize and EndingSize are annotated by different annotators using different imagery collected < 1 day apart.
Error_Category
TEXT 		Defines the error category based on DataOrError.
T0_PatchName_G
TEXT 		Unique code for each coral colony annotated in the initial time point. The first 11 characters are the site name, followed by genus code, patch number unique to the site, and either a 1 or 2 to denote which of two annotators delineated the patch.
T1_PatchName_G
TEXT 		Unique code for each coral colony annotated in the final time point. The first 11 characters are the site name, followed by genus code, patch number unique to the site, and either a 1 or 2 to denote which of two annotators delineated the patch.
ColonyName
TEXT 		Unique code for each coral colony annotated within the same time point. Coral patches that make up the same colony in the same time point will have the same ColonyName. The first 11 characters are the site name, followed by colony number, and either 0, 1, or 2 to denote which time point the colony is found in (0 = initial time point).
Spec_Code
TEXT 		4 letter code for the species observed
Genus
TEXT 		Scientific name of genus rank
Genus_Code
TEXT 		4-letter code for genus observed
StartingSize
NUMERIC 		Planar area of colony (cm2) at the initial time point.
EndingSize
NUMERIC 		Planar area (cm2) of colony in the final time point.
Shape_Length
NUMERIC 		Perimeter measurement of each coral colony in meters. Collected by adding up the perimeter measurement of each coral patch within the colony.
Shape_Area
NUMERIC 		Area measurement of each coral colony in square meters. Collected by adding up the area measurement of each coral patch within the colony.

Child Items

No Child Items for this record.

Contact Information

No contact information is available for this record.

Please contact the owner organization (PIFSC) for inquiries on this record.

Item Identification

Title: SfM Fixed Sites: SfM Derived Coral Annotations
Short Name: SfM Fixed Sites: Error Study
Status: Completed
Abstract:

Data dictionary for SfM-derived coral annotations within fixed sites.

Entity Information

Entity Type: Spreadsheet
Active Version?: Yes
Description:

Data dictionary for SfM-derived coral annotations within fixed sites.
Change Summary:

In 2022, T0 and T1_PatchName_G, StartingSize and EndingSize are not included in the dataset. Additionally, Shape_Length, Shape_Area and ColonyName have been added to the 2022 dataset.

Data Attributes

Attribute Summary

Rubric Score Primary Key? Name Type Description
100
 Site TEXT 9-character code for the site surveyed. Combines a 3-letter island code, 3-letter code for team that collected the raw imagery, and 3-letter site name.
100
 Island TEXT Name of island or atoll surveyed.
100
 Island_Code TEXT 3-letter code for Island.
100
 Latitude NUMERIC Latitude in decimal degrees, WGS84, for the given Site.
100
 Longitude NUMERIC Longitude in decimal degrees, WGS84 for the given site.
100
 StartingDate DATE Local date that the initial survey was conducted. For the Hawaii dataset, imagery collected on StartingDate is used to calculate StartingSize.
100
 EndingDate DATE Local date that the final survey was conducted. For the Hawaii dataset, imagery collected on EndingDate is used to calculate EndingSize.
100
 Date DATE The date of image collection in DD/MM/YYYY format.
100
 DataorError TEXT References method of data collection. DATA: Imagery of the same site were collected > 1 year apart. StartingSize and EndingSize are annotated within time points > 1 year apart. SAME.AN_DIFF.IM: StartingSize and EndingSize are annotated by the same annotator, but using different imagery collected < 1 day apart. DIFF.AN_SAME.IM: StartingSize and EndingSize are annotated by different annotators using the same imagery. DIFF.AN_DIFF.IM: StartingSize and EndingSize are annotated by different annotators using different imagery collected < 1 day apart.
100
 Error_Category TEXT Defines the error category based on DataOrError.
100
 T0_PatchName_G TEXT Unique code for each coral colony annotated in the initial time point. The first 11 characters are the site name, followed by genus code, patch number unique to the site, and either a 1 or 2 to denote which of two annotators delineated the patch.
100
 T1_PatchName_G TEXT Unique code for each coral colony annotated in the final time point. The first 11 characters are the site name, followed by genus code, patch number unique to the site, and either a 1 or 2 to denote which of two annotators delineated the patch.
100
 ColonyName TEXT Unique code for each coral colony annotated within the same time point. Coral patches that make up the same colony in the same time point will have the same ColonyName. The first 11 characters are the site name, followed by colony number, and either 0, 1, or 2 to denote which time point the colony is found in (0 = initial time point).
100
 Spec_Code TEXT 4 letter code for the species observed
100
 Genus TEXT Scientific name of genus rank
100
 Genus_Code TEXT 4-letter code for genus observed
100
 StartingSize NUMERIC Planar area of colony (cm2) at the initial time point.
100
 EndingSize NUMERIC Planar area (cm2) of colony in the final time point.
100
 Shape_Length NUMERIC Perimeter measurement of each coral colony in meters. Collected by adding up the perimeter measurement of each coral patch within the colony.
100
 Shape_Area NUMERIC Area measurement of each coral colony in square meters. Collected by adding up the area measurement of each coral patch within the colony.

Attribute Details

Site

CC ID: 1038718
Seq. Order: 1
Data Storage Type: TEXT
Required: Yes
Primary Key: No
Status: Active
Description:

9-character code for the site surveyed. Combines a 3-letter island code, 3-letter code for team that collected the raw imagery, and 3-letter site name.

Island

CC ID: 1063469
Seq. Order: 2
Data Storage Type: TEXT
Required: No
Primary Key: No
Status: Active
Description:

Name of island or atoll surveyed.

Island_Code

CC ID: 1063470
Seq. Order: 3
Data Storage Type: TEXT
Required: No
Primary Key: No
Status: Active
Description:

3-letter code for Island.

Latitude

CC ID: 1063471
Seq. Order: 4
Data Storage Type: NUMERIC
Required: No
Primary Key: No
Status: Active
Description:

Latitude in decimal degrees, WGS84, for the given Site.

Longitude

CC ID: 1063472
Seq. Order: 5
Data Storage Type: NUMERIC
Required: No
Primary Key: No
Status: Active
Description:

Longitude in decimal degrees, WGS84 for the given site.

StartingDate

CC ID: 1063473
Seq. Order: 6
Data Storage Type: DATE
Required: No
Primary Key: No
Status: Active
Description:

Local date that the initial survey was conducted. For the Hawaii dataset, imagery collected on StartingDate is used to calculate StartingSize.

EndingDate

CC ID: 1063474
Seq. Order: 7
Data Storage Type: DATE
Required: No
Primary Key: No
Status: Active
Description:

Local date that the final survey was conducted. For the Hawaii dataset, imagery collected on EndingDate is used to calculate EndingSize.

Date

CC ID: 1267582
Seq. Order: 7
Data Storage Type: DATE
Required: No
Primary Key: No
Status: Active
Description:

The date of image collection in DD/MM/YYYY format.

DataorError

CC ID: 1038719
Seq. Order: 8
Data Storage Type: TEXT
Required: No
Primary Key: No
Status: Active
Description:

References method of data collection.

DATA: Imagery of the same site were collected > 1 year apart. StartingSize and EndingSize are annotated within time points > 1 year apart.

SAME.AN_DIFF.IM: StartingSize and EndingSize are annotated by the same annotator, but using different imagery collected < 1 day apart.

DIFF.AN_SAME.IM: StartingSize and EndingSize are annotated by different annotators using the same imagery.

DIFF.AN_DIFF.IM: StartingSize and EndingSize are annotated by different annotators using different imagery collected < 1 day apart.

Error_Category

CC ID: 1039085
Seq. Order: 9
Data Storage Type: TEXT
Required: No
Primary Key: No
Status: Active
Description:

Defines the error category based on DataOrError.

T0_PatchName_G

CC ID: 1039086
Seq. Order: 9
Data Storage Type: TEXT
Required: No
Primary Key: No
Status: Active
Description:

Unique code for each coral colony annotated in the initial time point. The first 11 characters are the site name, followed by genus code, patch number unique to the site, and either a 1 or 2 to denote which of two annotators delineated the patch.

T1_PatchName_G

CC ID: 1039087
Seq. Order: 10
Data Storage Type: TEXT
Required: No
Primary Key: No
Status: Active
Description:

Unique code for each coral colony annotated in the final time point. The first 11 characters are the site name, followed by genus code, patch number unique to the site, and either a 1 or 2 to denote which of two annotators delineated the patch.

ColonyName

CC ID: 1264513
Seq. Order: 10
Data Storage Type: TEXT
Required: No
Primary Key: No
Status: Active
Description:

Unique code for each coral colony annotated within the same time point. Coral patches that make up the same colony in the same time point will have the same ColonyName. The first 11 characters are the site name, followed by colony number, and either 0, 1, or 2 to denote which time point the colony is found in (0 = initial time point).

Spec_Code

CC ID: 1038720
Seq. Order: 11
Data Storage Type: TEXT
Max Length: 4
Required: No
Primary Key: No
Status: Active
Description:

4 letter code for the species observed

Genus

CC ID: 1038721
Seq. Order: 12
Data Storage Type: TEXT
Required: No
Primary Key: No
Status: Active
Description:

Scientific name of genus rank

Genus_Code

CC ID: 1038722
Seq. Order: 12
Data Storage Type: TEXT
Required: No
Primary Key: No
Status: Active
Description:

4-letter code for genus observed

StartingSize

CC ID: 1038723
Seq. Order: 14
Data Storage Type: NUMERIC
Required: No
Primary Key: No
Status: Active
Description:

Planar area of colony (cm2) at the initial time point.

EndingSize

CC ID: 1038724
Seq. Order: 15
Data Storage Type: NUMERIC
Required: No
Primary Key: No
Status: Active
Description:

Planar area (cm2) of colony in the final time point.

Shape_Length

CC ID: 1267583
Seq. Order: 16
Data Storage Type: NUMERIC
Required: No
Primary Key: No
Status: Active
Description:

Perimeter measurement of each coral colony in meters. Collected by adding up the perimeter measurement of each coral patch within the colony.

Shape_Area

CC ID: 1267584
Seq. Order: 17
Data Storage Type: NUMERIC
Required: No
Primary Key: No
Status: Active
Description:

Area measurement of each coral colony in square meters. Collected by adding up the area measurement of each coral patch within the colony.

Catalog Details

Catalog Item ID: 63094
GUID: gov.noaa.nmfs.inport:63094
Metadata Record Created By: Brooke Olenski
Metadata Record Created: 2020-10-20 03:25+0000
Metadata Record Last Modified By: Lori H Luers
Metadata Record Last Modified: 2023-09-11 18:57+0000
Metadata Record Published: 2023-09-11
Owner Org: PIFSC
Metadata Publication Status: Published Externally
Do Not Publish?: N
Metadata Last Review Date: 2023-08-30
Metadata Review Frequency: 1 Year
Metadata Next Review Date: 2024-08-30