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Summary

Short Citation
Office for Coastal Management, 2024: Refining Techniques for High-Frequency Monitoring of Chlorophyll in the NERRS - NERRS/NSC(NERRS Science Collaborative), https://www.fisheries.noaa.gov/inport/item/67633.
Full Citation Examples

Abstract

Twelve biogeochemically diverse reserves participated in a one -year study to standardize protocols for calibration and data management using both chlorophyll methods (extractions and in situ sensor readings) at various frequencies. Given technician experiences with preliminary sensor deployments and results from previous studies, one objective of this project was to identify possible sensor interferences and develop standardized empirical correction procedures. Another objective of this project was to test how well extracted CHL-A (micrograms/L) could be predicted from the suite of YSI EXO sensors. While there is value in the YSI EXO Total Algae (TAL) sensor's relative fluorescence units (RFU) for short-term or single-site chlorophyll measurements, reliable predictions of extracted CHL-A (micrograms/L) would provide a standard measure to compare among sites and with historic data.

Distribution Information

Access Constraints:

None

Use Constraints:

Cite this dataset when used as a source: NOAA retains the right to analyze, synthesize and publish summaries of the NERRS/NSC data. The NERRS/NSC retains the right to be fully credited for having collected and process the data. Following academic courtesy standards, the NERR site where the data were collected should be contacted and fully acknowledged in any subsequent publications in which any part of the data are used. The data enclosed within this package/transmission are only as accurate as the quality assurance and quality control procedures that are described in the associated metadata reporting statement allow. The user bears all responsibility for its subsequent use/misuse in any further analyses or comparisons. The Federal government does not assume liability to the Recipient or third persons, nor will the Federal government reimburse or indemnify the Recipient for its liability due to any losses resulting in any way from the use of this data. Requested citation format: NOAA National Estuarine Research Reserve System (NERRS) Science Collaborative(NSC).

Controlled Theme Keywords

ESTUARY

Child Items

Type Title
Entity N/A

Contact Information

Metadata Contact
Jeremy Cothran
jeremy.cothran@gmail.com

Extents

Geographic Area 1

-92.295° W, -91.935° E, 46.73° N, 46.59° S

Lake Superior NERR, WI

Time Frame 1
2020-12 - 2021-10

Item Identification

Title: Refining Techniques for High-Frequency Monitoring of Chlorophyll in the NERRS - NERRS/NSC(NERRS Science Collaborative)
Status: Completed
Creation Date: 2021
Publication Date: 2021
Abstract:

Twelve biogeochemically diverse reserves participated in a one -year study to standardize protocols for calibration and data management using both chlorophyll methods (extractions and in situ sensor readings) at various frequencies. Given technician experiences with preliminary sensor deployments and results from previous studies, one objective of this project was to identify possible sensor interferences and develop standardized empirical correction procedures. Another objective of this project was to test how well extracted CHL-A (micrograms/L) could be predicted from the suite of YSI EXO sensors. While there is value in the YSI EXO Total Algae (TAL) sensor's relative fluorescence units (RFU) for short-term or single-site chlorophyll measurements, reliable predictions of extracted CHL-A (micrograms/L) would provide a standard measure to compare among sites and with historic data.

Purpose:

Concentrations of the photosynthetic pigment chlorophyll a are used as a proxy for phytoplankton biomass by estuarine scientists and managers to study eutrophication, food web dynamics, and harmful algal blooms. Traditionally, chlorophyll has been measured by filtering a water sample and extracting pigments from the filter in a laboratory, which is the current practice employed by the NERRS in monthly grab samples; however, monthly measurements are not sufficient for tracking plankton dynamics, which fluctuate hourly. Recent sensor technology development allows high-frequency, in situ measurement of chlorophyll on the same YSI EXO sondes used in the NERRS System-Wide Monitoring Program (SWMP). While in situ measurements are related to extracted measurements, there are variations in the environment that cause inconsistencies. Before this project, no tested relationships existed for the EXO sensors, and SWMP practitioners were asking for this information so they can respond to local and national needs for algal bloom research.

Notes:

Loaded by FGDC Metadata Uploader, batch 10156, 10-31-2017 15:33

Supplemental Information:

Project lead and contact information:

Nikki Dix, Guana Tolomato Matanzas NERR, 904-380-8613, nikki.dix@dep.state.fl.us

Erik Smith, North Inlet Winyah Bay NERR, erik@baruch.sc.edu

Silas Tanner, GTM NERR, Silas.Tanner@dep.state.fl.us

==About the data

6 related datasets are described in this document:

1. Combined field- and lab-based comparison data collected by participating reserves

2. Monitoring data using different methods from three reserves

3. Interference test results from seven reserves

4. Metadata for sampling details at participating reserves, e.g, site location, protocols

5. Chlorophyll comparison data files from individual reserves

6. Raw files from participating reserves

Keywords

Theme Keywords

Thesaurus Keyword
Global Change Master Directory (GCMD) Science Keywords
EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > MARINE ECOSYSTEMS > ESTUARY
UNCONTROLLED
None chlorophyll
None estuary HARMFUL ALGAL BLOOM (HABs)
None estuary monitoring
None estuary nutrients
None estuary water quality
None fdom
None fluorescence
None high frequency
None interference
None temperature
None turbidity

Spatial Keywords

Thesaurus Keyword
UNCONTROLLED
None Elkhorn Slough NERR, CA
None Grand Bay NERR, MS
None Great Bay NERR, NH
None Guana Tolomato Matanzas NERR, FL
None He'eia NERR, HI
None Lake Superior NERR, WI
None Mission Aransas NERR, TX
None North Inlet-Winyah Bay NERR, SC
None Old Woman Creek NERR, OH
None Padilla Bay NERR, WA
None Sapelo Island NERR, GA
None Wells NERR, ME

Data Set Information

Data Set Scope Code: Data Set
Maintenance Frequency: As Needed
Distribution Liability:

The distributor does not assume liability.

Support Roles

Data Steward

CC ID: 1179903
Date Effective From: 2015
Date Effective To:
Contact (Organization): Office for Coastal Management (OCM)
Address: 2234 South Hobson Avenue
Charleston, SC 29405-2413
URL: https://www.coast.noaa.gov/

Distributor

CC ID: 1179904
Date Effective From: 2015
Date Effective To:
Contact (Organization): Office for Coastal Management (OCM)
Address: 2234 South Hobson Avenue
Charleston, SC 29405-2413
URL: https://www.coast.noaa.gov/

Metadata Contact

CC ID: 1179901
Date Effective From: 2017-10-31
Date Effective To:
Contact (Person): Cothran, Jeremy
Email Address: jeremy.cothran@gmail.com
View Historical Support Roles

Extents

Currentness Reference: Ground Condition

Extent Group 1

Extent Group 1 / Geographic Area 1

CC ID: 1179950
W° Bound: -92.295
E° Bound: -91.935
N° Bound: 46.73
S° Bound: 46.59
Description

Lake Superior NERR, WI

Extent Group 1 / Time Frame 1

CC ID: 1179951
Time Frame Type: Range
Start: 2020-12
End: 2021-10

Extent Group 2

Extent Group 2 / Geographic Area 1

CC ID: 1179954
W° Bound: -82.525
E° Bound: -82.5
N° Bound: 41.385
S° Bound: 41.364
Description

Old Woman Creek NERR, OH

Extent Group 3

Extent Group 3 / Geographic Area 1

CC ID: 1179959
W° Bound: -79.285
E° Bound: -79.15
N° Bound: 33.375
S° Bound: 33.204
Description

North Inlet-Winyah Bay NERR, SC

Extent Group 3 / Geographic Area 2

CC ID: 1179960
W° Bound: -81.31
E° Bound: -81.25
N° Bound: 31.5
S° Bound: 31.375
Description

Sapelo Island NERR, GA

Extent Group 3 / Geographic Area 3

CC ID: 1179961
W° Bound: -81.39
E° Bound: -81.15
N° Bound: 30.18
S° Bound: 29.59
Description

Guana Tolomato Matanzas NERR, FL

Extent Group 3 / Geographic Area 4

CC ID: 1179962
W° Bound: -88.48
E° Bound: -88.39
N° Bound: 30.43
S° Bound: 30.31
Description

Grand Bay NERR, MS

Extent Group 3 / Geographic Area 5

CC ID: 1179963
W° Bound: -97.3
E° Bound: -96.75
N° Bound: 28.32
S° Bound: 27.82
Description

Mission Aransas, TX

Extent Group 3 / Geographic Area 6

CC ID: 1179964
W° Bound: -121.772
E° Bound: -121.72
N° Bound: 36.843
S° Bound: 36.799
Description

Elkhorn Slough NERR, CA

Extent Group 3 / Geographic Area 7

CC ID: 1179965
W° Bound: -122.562
E° Bound: -122.455
N° Bound: 48.58
S° Bound: 48.45
Description

Padilla Bay NERR, WA

Extent Group 3 / Geographic Area 8

CC ID: 1179956
W° Bound: -70.6
E° Bound: -70.535
N° Bound: 43.35
S° Bound: 43.26
Description

Wells NERR, ME

Extent Group 3 / Geographic Area 9

CC ID: 1179958
W° Bound: -70.97
E° Bound: -70.82
N° Bound: 43.18
S° Bound: 42.975
Description

Great Bay NERR, NH

Extent Group 3 / Geographic Area 10

CC ID: 1179966
W° Bound: -157.81
E° Bound: -157.77
N° Bound: 21.45
S° Bound: 21.42
Description

He'eia NERR, HI

Access Information

Security Class: Unclassified
Data Access Constraints:

None

Data Use Constraints:

Cite this dataset when used as a source: NOAA retains the right to analyze, synthesize and publish summaries of the NERRS/NSC data. The NERRS/NSC retains the right to be fully credited for having collected and process the data. Following academic courtesy standards, the NERR site where the data were collected should be contacted and fully acknowledged in any subsequent publications in which any part of the data are used. The data enclosed within this package/transmission are only as accurate as the quality assurance and quality control procedures that are described in the associated metadata reporting statement allow. The user bears all responsibility for its subsequent use/misuse in any further analyses or comparisons. The Federal government does not assume liability to the Recipient or third persons, nor will the Federal government reimburse or indemnify the Recipient for its liability due to any losses resulting in any way from the use of this data. Requested citation format: NOAA National Estuarine Research Reserve System (NERRS) Science Collaborative(NSC).

Distribution Information

Distribution 1

CC ID: 1179905
Download URL: https://nerrssciencecollaborative.org/project/Dix20
Distributor: Office for Coastal Management (OCM) (2015 - Present)
File Name: Ralston16
File Type (Deprecated): Multiple formats

URLs

URL 1

CC ID: 1179908
URL: https://nerrssciencecollaborative.org/project/Dix20
Name: Dix20
URL Type:
Online Resource

URL 2

CC ID: 1179946
URL: https://github.com/skdunnigan/chla-nerrs-catalyst
Name: github
URL Type:
Online Resource
Description:

All R code developed during the project for data analysis and visualization is publicly accessible

Data Quality

Representativeness:

N/A

Quality Control Procedures Employed:

This information is detailed within the project links.

Lineage

Lineage Statement:

This information is detailed within the project links.

Sources

N/A

CC ID: 1179911

Process Steps

Process Step 1

CC ID: 1179912
Description:

N/A

Process Contact: Office for Coastal Management (OCM)

Child Items

Rubric scores updated every 15m

Rubric Score Type Title
Entity N/A

Catalog Details

Catalog Item ID: 67633
GUID: gov.noaa.nmfs.inport:67633
Metadata Record Created By: Jeremy Cothran
Metadata Record Created: 2022-08-08 19:54+0000
Metadata Record Last Modified By: Jeremy Cothran
Metadata Record Last Modified: 2022-08-10 11:54+0000
Metadata Record Published: 2022-08-08
Owner Org: OCM
Metadata Publication Status: Published Externally
Do Not Publish?: N
Metadata Last Review Date: 2022-08-08
Metadata Review Frequency: 1 Year
Metadata Next Review Date: 2023-08-08