Refining Techniques for High-Frequency Monitoring of Chlorophyll in the NERRS - NERRS/NSC(NERRS Science Collaborative)
Data Set (DS) | Office for Coastal Management (OCM)GUID: gov.noaa.nmfs.inport:67633 | Updated: August 10, 2022 | Published / External
Summary
Short Citation
Office for Coastal Management, 2024: Refining Techniques for High-Frequency Monitoring of Chlorophyll in the NERRS - NERRS/NSC(NERRS Science Collaborative), https://www.fisheries.noaa.gov/inport/item/67633.
Full Citation Examples
Twelve biogeochemically diverse reserves participated in a one -year study to standardize protocols for calibration and data management using both chlorophyll methods (extractions and in situ sensor readings) at various frequencies. Given technician experiences with preliminary sensor deployments and results from previous studies, one objective of this project was to identify possible sensor interferences and develop standardized empirical correction procedures. Another objective of this project was to test how well extracted CHL-A (micrograms/L) could be predicted from the suite of YSI EXO sensors. While there is value in the YSI EXO Total Algae (TAL) sensor's relative fluorescence units (RFU) for short-term or single-site chlorophyll measurements, reliable predictions of extracted CHL-A (micrograms/L) would provide a standard measure to compare among sites and with historic data.
Distribution Information
None
Cite this dataset when used as a source: NOAA retains the right to analyze, synthesize and publish summaries of the NERRS/NSC data. The NERRS/NSC retains the right to be fully credited for having collected and process the data. Following academic courtesy standards, the NERR site where the data were collected should be contacted and fully acknowledged in any subsequent publications in which any part of the data are used. The data enclosed within this package/transmission are only as accurate as the quality assurance and quality control procedures that are described in the associated metadata reporting statement allow. The user bears all responsibility for its subsequent use/misuse in any further analyses or comparisons. The Federal government does not assume liability to the Recipient or third persons, nor will the Federal government reimburse or indemnify the Recipient for its liability due to any losses resulting in any way from the use of this data. Requested citation format: NOAA National Estuarine Research Reserve System (NERRS) Science Collaborative(NSC).
Controlled Theme Keywords
ESTUARY
Child Items
Type | Title |
---|---|
Entity | N/A |
Contact Information
Metadata Contact
Jeremy Cothran
jeremy.cothran@gmail.com
Extents
-92.295° W,
-91.935° E,
46.73° N,
46.59° S
Lake Superior NERR, WI
2020-12 - 2021-10
Item Identification
Title: | Refining Techniques for High-Frequency Monitoring of Chlorophyll in the NERRS - NERRS/NSC(NERRS Science Collaborative) |
---|---|
Status: | Completed |
Creation Date: | 2021 |
Publication Date: | 2021 |
Abstract: |
Twelve biogeochemically diverse reserves participated in a one -year study to standardize protocols for calibration and data management using both chlorophyll methods (extractions and in situ sensor readings) at various frequencies. Given technician experiences with preliminary sensor deployments and results from previous studies, one objective of this project was to identify possible sensor interferences and develop standardized empirical correction procedures. Another objective of this project was to test how well extracted CHL-A (micrograms/L) could be predicted from the suite of YSI EXO sensors. While there is value in the YSI EXO Total Algae (TAL) sensor's relative fluorescence units (RFU) for short-term or single-site chlorophyll measurements, reliable predictions of extracted CHL-A (micrograms/L) would provide a standard measure to compare among sites and with historic data. |
Purpose: |
Concentrations of the photosynthetic pigment chlorophyll a are used as a proxy for phytoplankton biomass by estuarine scientists and managers to study eutrophication, food web dynamics, and harmful algal blooms. Traditionally, chlorophyll has been measured by filtering a water sample and extracting pigments from the filter in a laboratory, which is the current practice employed by the NERRS in monthly grab samples; however, monthly measurements are not sufficient for tracking plankton dynamics, which fluctuate hourly. Recent sensor technology development allows high-frequency, in situ measurement of chlorophyll on the same YSI EXO sondes used in the NERRS System-Wide Monitoring Program (SWMP). While in situ measurements are related to extracted measurements, there are variations in the environment that cause inconsistencies. Before this project, no tested relationships existed for the EXO sensors, and SWMP practitioners were asking for this information so they can respond to local and national needs for algal bloom research. |
Notes: |
Loaded by FGDC Metadata Uploader, batch 10156, 10-31-2017 15:33 |
Supplemental Information: |
Project lead and contact information: Nikki Dix, Guana Tolomato Matanzas NERR, 904-380-8613, nikki.dix@dep.state.fl.us Erik Smith, North Inlet Winyah Bay NERR, erik@baruch.sc.edu Silas Tanner, GTM NERR, Silas.Tanner@dep.state.fl.us ==About the data 6 related datasets are described in this document: 1. Combined field- and lab-based comparison data collected by participating reserves 2. Monitoring data using different methods from three reserves 3. Interference test results from seven reserves 4. Metadata for sampling details at participating reserves, e.g, site location, protocols 5. Chlorophyll comparison data files from individual reserves 6. Raw files from participating reserves |
Keywords
Theme Keywords
Thesaurus | Keyword |
---|---|
Global Change Master Directory (GCMD) Science Keywords |
EARTH SCIENCE > BIOSPHERE > ECOSYSTEMS > MARINE ECOSYSTEMS > ESTUARY
|
UNCONTROLLED | |
None | chlorophyll |
None | estuary HARMFUL ALGAL BLOOM (HABs) |
None | estuary monitoring |
None | estuary nutrients |
None | estuary water quality |
None | fdom |
None | fluorescence |
None | high frequency |
None | interference |
None | temperature |
None | turbidity |
Spatial Keywords
Thesaurus | Keyword |
---|---|
UNCONTROLLED | |
None | Elkhorn Slough NERR, CA |
None | Grand Bay NERR, MS |
None | Great Bay NERR, NH |
None | Guana Tolomato Matanzas NERR, FL |
None | He'eia NERR, HI |
None | Lake Superior NERR, WI |
None | Mission Aransas NERR, TX |
None | North Inlet-Winyah Bay NERR, SC |
None | Old Woman Creek NERR, OH |
None | Padilla Bay NERR, WA |
None | Sapelo Island NERR, GA |
None | Wells NERR, ME |
Data Set Information
Data Set Scope Code: | Data Set |
---|---|
Maintenance Frequency: | As Needed |
Distribution Liability: |
The distributor does not assume liability. |
Support Roles
Data Steward
Date Effective From: | 2015 |
---|---|
Date Effective To: | |
Contact (Organization): | Office for Coastal Management (OCM) |
Address: |
2234 South Hobson Avenue Charleston, SC 29405-2413 |
URL: | https://www.coast.noaa.gov/ |
Distributor
Date Effective From: | 2015 |
---|---|
Date Effective To: | |
Contact (Organization): | Office for Coastal Management (OCM) |
Address: |
2234 South Hobson Avenue Charleston, SC 29405-2413 |
URL: | https://www.coast.noaa.gov/ |
Metadata Contact
Date Effective From: | 2017-10-31 |
---|---|
Date Effective To: | |
Contact (Person): | Cothran, Jeremy |
Email Address: | jeremy.cothran@gmail.com |
Extents
Currentness Reference: | Ground Condition |
---|
Extent Group 1
Extent Group 1 / Geographic Area 1
W° Bound: | -92.295 | |
---|---|---|
E° Bound: | -91.935 | |
N° Bound: | 46.73 | |
S° Bound: | 46.59 | |
Description |
Lake Superior NERR, WI |
Extent Group 1 / Time Frame 1
Time Frame Type: | Range |
---|---|
Start: | 2020-12 |
End: | 2021-10 |
Extent Group 2
Extent Group 2 / Geographic Area 1
W° Bound: | -82.525 | |
---|---|---|
E° Bound: | -82.5 | |
N° Bound: | 41.385 | |
S° Bound: | 41.364 | |
Description |
Old Woman Creek NERR, OH |
Extent Group 3
Extent Group 3 / Geographic Area 1
W° Bound: | -79.285 | |
---|---|---|
E° Bound: | -79.15 | |
N° Bound: | 33.375 | |
S° Bound: | 33.204 | |
Description |
North Inlet-Winyah Bay NERR, SC |
Extent Group 3 / Geographic Area 2
W° Bound: | -81.31 | |
---|---|---|
E° Bound: | -81.25 | |
N° Bound: | 31.5 | |
S° Bound: | 31.375 | |
Description |
Sapelo Island NERR, GA |
Extent Group 3 / Geographic Area 3
W° Bound: | -81.39 | |
---|---|---|
E° Bound: | -81.15 | |
N° Bound: | 30.18 | |
S° Bound: | 29.59 | |
Description |
Guana Tolomato Matanzas NERR, FL |
Extent Group 3 / Geographic Area 4
W° Bound: | -88.48 | |
---|---|---|
E° Bound: | -88.39 | |
N° Bound: | 30.43 | |
S° Bound: | 30.31 | |
Description |
Grand Bay NERR, MS |
Extent Group 3 / Geographic Area 5
W° Bound: | -97.3 | |
---|---|---|
E° Bound: | -96.75 | |
N° Bound: | 28.32 | |
S° Bound: | 27.82 | |
Description |
Mission Aransas, TX |
Extent Group 3 / Geographic Area 6
W° Bound: | -121.772 | |
---|---|---|
E° Bound: | -121.72 | |
N° Bound: | 36.843 | |
S° Bound: | 36.799 | |
Description |
Elkhorn Slough NERR, CA |
Extent Group 3 / Geographic Area 7
W° Bound: | -122.562 | |
---|---|---|
E° Bound: | -122.455 | |
N° Bound: | 48.58 | |
S° Bound: | 48.45 | |
Description |
Padilla Bay NERR, WA |
Extent Group 3 / Geographic Area 8
W° Bound: | -70.6 | |
---|---|---|
E° Bound: | -70.535 | |
N° Bound: | 43.35 | |
S° Bound: | 43.26 | |
Description |
Wells NERR, ME |
Extent Group 3 / Geographic Area 9
W° Bound: | -70.97 | |
---|---|---|
E° Bound: | -70.82 | |
N° Bound: | 43.18 | |
S° Bound: | 42.975 | |
Description |
Great Bay NERR, NH |
Extent Group 3 / Geographic Area 10
W° Bound: | -157.81 | |
---|---|---|
E° Bound: | -157.77 | |
N° Bound: | 21.45 | |
S° Bound: | 21.42 | |
Description |
He'eia NERR, HI |
Access Information
Security Class: | Unclassified |
---|---|
Data Access Constraints: |
None |
Data Use Constraints: |
Cite this dataset when used as a source: NOAA retains the right to analyze, synthesize and publish summaries of the NERRS/NSC data. The NERRS/NSC retains the right to be fully credited for having collected and process the data. Following academic courtesy standards, the NERR site where the data were collected should be contacted and fully acknowledged in any subsequent publications in which any part of the data are used. The data enclosed within this package/transmission are only as accurate as the quality assurance and quality control procedures that are described in the associated metadata reporting statement allow. The user bears all responsibility for its subsequent use/misuse in any further analyses or comparisons. The Federal government does not assume liability to the Recipient or third persons, nor will the Federal government reimburse or indemnify the Recipient for its liability due to any losses resulting in any way from the use of this data. Requested citation format: NOAA National Estuarine Research Reserve System (NERRS) Science Collaborative(NSC). |
Distribution Information
Distribution 1
Download URL: | https://nerrssciencecollaborative.org/project/Dix20 |
---|---|
Distributor: | Office for Coastal Management (OCM) (2015 - Present) |
File Name: | Ralston16 |
File Type (Deprecated): | Multiple formats |
URLs
URL 1
URL: | https://nerrssciencecollaborative.org/project/Dix20 |
---|---|
Name: | Dix20 |
URL Type: |
Online Resource
|
URL 2
URL: | https://github.com/skdunnigan/chla-nerrs-catalyst |
---|---|
Name: | github |
URL Type: |
Online Resource
|
Description: |
All R code developed during the project for data analysis and visualization is publicly accessible |
Data Quality
Representativeness: |
N/A |
---|---|
Quality Control Procedures Employed: |
This information is detailed within the project links. |
Lineage
Lineage Statement: |
This information is detailed within the project links. |
---|
Sources
N/A
Process Steps
Process Step 1
Description: |
N/A |
---|---|
Process Contact: | Office for Coastal Management (OCM) |
Child Items
Rubric scores updated every 15m
Type | Title | |
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Entity | N/A |
Catalog Details
Catalog Item ID: | 67633 |
---|---|
GUID: | gov.noaa.nmfs.inport:67633 |
Metadata Record Created By: | Jeremy Cothran |
Metadata Record Created: | 2022-08-08 19:54+0000 |
Metadata Record Last Modified By: | Jeremy Cothran |
Metadata Record Last Modified: | 2022-08-10 11:54+0000 |
Metadata Record Published: | 2022-08-08 |
Owner Org: | OCM |
Metadata Publication Status: | Published Externally |
Do Not Publish?: | N |
Metadata Last Review Date: | 2022-08-08 |
Metadata Review Frequency: | 1 Year |
Metadata Next Review Date: | 2023-08-08 |