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Summary
Item Identification
Keywords
Physical Location
Data Set Info
Support Roles
Extents
Access Info
Distribution Info
Tech Environment
Data Quality
Data Management
Lineage
Catalog Details

Summary

Short Citation
Alaska Fisheries Science Center, 2024: AFSC/ABL: 2006 Sockeye genetics, https://www.fisheries.noaa.gov/inport/item/17259.
Full Citation Examples

Abstract

The purpose of this study was to genetically analyze axillary process samples from ~6,000 sockeye salmon harvested in the 2006 and 2007 Districts 101 gillnet and 104 purse seine sockeye fisheries to determine proportions of Canadian and U.S. fish. A SNP genetic baseline of 45 SNPs (41 markers as 3 groups of SNPs are linked) assayed in 84 sockeye populations from southeast Alaska and British Columbia was developed by the ADF&G. The 84 populations were grouped into 14 regions. With the exception of locus One_Serpin, which failed during genotyping, the same markers were evaluated in the baseline and mixtures. Stock proportions were estimated using a Bayesian mixture analysis. In addition to performing mixture analysis for the 2006 and 2007 fisheries, the sockeye baseline was also expanded as part of the 2007 project. Approximately 1700 fish from 21 locations were genotyped, which will be included in a future updated baseline.

Distribution Information

Access Constraints:

For scientific, management, and regulation compliance purposes, these data are confidential under the Magnuson-Stevens Fishery Conservation and Management Act; as amended, Public Law 109-479; 16 U.S.C. 1953; implemented at 50 CFR 679.50. Therefore unprocessed (raw) data can be shared only with authorized persons; however aggregated forms of the data are generally available.

Use Constraints:

User must read and fully comprehend the metadata prior to use. Data should not be used beyond the limits of the source scale. Acknowledgement of NOAA, as the source from which these data were obtained, in any publications and/or other representations of these data is suggested.

Controlled Theme Keywords

biota

Child Items

No Child Items for this record.

Contact Information

Point of Contact
Chuck Guthrie
chuck.guthrie@noaa.gov

Metadata Contact
Emily A Fergusson
emily.fergusson@noaa.gov
907-789-6613

Extents

Geographic Area 1

-137.71° W, -131.802° E, 58.367° N, 55.115° S

Southeast Alaska

Time Frame 1
2006

Item Identification

Title: AFSC/ABL: 2006 Sockeye genetics
Short Name: AFSC/ABL: 2006 Sockeye genetics
Status: Completed
Publication Date: Unknown
Abstract:

The purpose of this study was to genetically analyze axillary process samples from ~6,000 sockeye salmon harvested in the 2006 and 2007 Districts 101 gillnet and 104 purse seine sockeye fisheries to determine proportions of Canadian and U.S. fish. A SNP genetic baseline of 45 SNPs (41 markers as 3 groups of SNPs are linked) assayed in 84 sockeye populations from southeast Alaska and British Columbia was developed by the ADF&G. The 84 populations were grouped into 14 regions. With the exception of locus One_Serpin, which failed during genotyping, the same markers were evaluated in the baseline and mixtures. Stock proportions were estimated using a Bayesian mixture analysis. In addition to performing mixture analysis for the 2006 and 2007 fisheries, the sockeye baseline was also expanded as part of the 2007 project. Approximately 1700 fish from 21 locations were genotyped, which will be included in a future updated baseline.

Purpose:

This dataset contains the genotype information for approximately 1700 fish from 21 locations to determine proportions of Canadian and U.S. fish.

Notes:

Loaded by batch 3875, 12-18-2012 18:09

Keywords

Theme Keywords

Thesaurus Keyword
ISO 19115 Topic Category
biota

Spatial Keywords

Thesaurus Keyword
UNCONTROLLED
Geographic Names Information System Alaska

Physical Location

Organization: Auke Bay Laboratories
City: Juneau
State/Province: AK
Country: US

Data Set Information

Data Set Scope Code: Data Set
Data Set Type: Excel and SAS Dataset
Maintenance Frequency: None Planned
Data Presentation Form: Document (digital)
Distribution Liability:

For scientific, management, and regulation compliance purposes, these data are confidential under the Magnuson-Stevens Fishery Conservation and Management Act; as amended, Public Law 109-479; 16 U.S.C. 1953; implemented at 50 CFR 679.50. Therefore unprocessed (raw) data can be shared only with authorized persons; however aggregated forms of the data are generally available.

Support Roles

Data Steward

CC ID: 232529
Date Effective From: 2015-10-01
Date Effective To:
Contact (Person): Guthrie, Chuck
Email Address: chuck.guthrie@noaa.gov

Distributor

CC ID: 81844
Date Effective From: 2012-12-18
Date Effective To:
Contact (Person): Guthrie, Chuck
Email Address: chuck.guthrie@noaa.gov

Metadata Contact

CC ID: 81846
Date Effective From: 2012-12-18
Date Effective To:
Contact (Person): Fergusson, Emily A
Address: 17109 Pt Lena Loop Road
Juneau, AL
Email Address: emily.fergusson@noaa.gov
Phone: 907-789-6613

Originator

CC ID: 81845
Date Effective From: 2012-12-18
Date Effective To:
Contact (Person): Guthrie, Chuck
Email Address: chuck.guthrie@noaa.gov

Point of Contact

CC ID: 81843
Date Effective From: 2012-12-18
Date Effective To:
Contact (Person): Guthrie, Chuck
Email Address: chuck.guthrie@noaa.gov

Extents

Currentness Reference: Ground Condition

Extent Group 1

Extent Group 1 / Geographic Area 1

CC ID: 81842
W° Bound: -137.71
E° Bound: -131.802
N° Bound: 58.367
S° Bound: 55.115
Description

Southeast Alaska

Extent Group 1 / Time Frame 1

CC ID: 81841
Time Frame Type: Discrete
Start: 2006

Access Information

Security Class: Unclassified
Data Access Procedure:

N/A

Data Access Constraints:

For scientific, management, and regulation compliance purposes, these data are confidential under the Magnuson-Stevens Fishery Conservation and Management Act; as amended, Public Law 109-479; 16 U.S.C. 1953; implemented at 50 CFR 679.50. Therefore unprocessed (raw) data can be shared only with authorized persons; however aggregated forms of the data are generally available.

Data Use Constraints:

User must read and fully comprehend the metadata prior to use. Data should not be used beyond the limits of the source scale. Acknowledgement of NOAA, as the source from which these data were obtained, in any publications and/or other representations of these data is suggested.

Distribution Information

Distribution 1

CC ID: 233739
Download URL: https://www.ncei.noaa.gov/
Distributor:
Description:

NCEI to be determined

Technical Environment

Description:

Microsoft Excel spreadsheet

Data Quality

Completeness Report:

None

Quality Control Procedures Employed:

Contact the dataset POC for full QA/QC methodology

Data Management

Have Resources for Management of these Data Been Identified?: Yes
Approximate Percentage of Budget for these Data Devoted to Data Management: Unknown
Do these Data Comply with the Data Access Directive?: Yes
Is Access to the Data Limited Based on an Approved Waiver?: Yes
If Distributor (Data Hosting Service) is Needed, Please Indicate: yes
Approximate Delay Between Data Collection and Dissemination: unknown
If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed:

no delay

Actual or Planned Long-Term Data Archive Location: To Be Determined
If To Be Determined, Unable to Archive, or No Archiving Intended, Explain:

NCEI site yet to be determined

Approximate Delay Between Data Collection and Archiving: unknown
How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive?:

IT Security and Contingency Plan for the system establishes procedures and applies to the functions, operations, and resources necessary to recover and restore data as hosted in the Western Regional Support Center in Seattle, Washington, following a disruption.

Lineage

Lineage Statement:

Contact POC for full methodology

Catalog Details

Catalog Item ID: 17259
GUID: gov.noaa.nmfs.inport:17259
Metadata Record Created By: Doug Turnbull
Metadata Record Created: 2012-12-18 18:09+0000
Metadata Record Last Modified By: SysAdmin InPortAdmin
Metadata Record Last Modified: 2023-05-30 18:10+0000
Metadata Record Published: 2016-05-03
Owner Org: AFSC
Metadata Publication Status: Published Externally
Do Not Publish?: N
Metadata Last Review Date: 2016-05-03
Metadata Review Frequency: 1 Year
Metadata Next Review Date: 2017-05-03