AFSC/ABL: 2006 Sockeye genetics
Data Set (DS) | Alaska Fisheries Science Center (AFSC)GUID: gov.noaa.nmfs.inport:17259 | Updated: May 30, 2023 | Published / External
Summary
Short Citation
Alaska Fisheries Science Center, 2024: AFSC/ABL: 2006 Sockeye genetics, https://www.fisheries.noaa.gov/inport/item/17259.
Full Citation Examples
The purpose of this study was to genetically analyze axillary process samples from ~6,000 sockeye salmon harvested in the 2006 and 2007 Districts 101 gillnet and 104 purse seine sockeye fisheries to determine proportions of Canadian and U.S. fish. A SNP genetic baseline of 45 SNPs (41 markers as 3 groups of SNPs are linked) assayed in 84 sockeye populations from southeast Alaska and British Columbia was developed by the ADF&G. The 84 populations were grouped into 14 regions. With the exception of locus One_Serpin, which failed during genotyping, the same markers were evaluated in the baseline and mixtures. Stock proportions were estimated using a Bayesian mixture analysis. In addition to performing mixture analysis for the 2006 and 2007 fisheries, the sockeye baseline was also expanded as part of the 2007 project. Approximately 1700 fish from 21 locations were genotyped, which will be included in a future updated baseline.
Distribution Information
-
NCEI to be determined
For scientific, management, and regulation compliance purposes, these data are confidential under the Magnuson-Stevens Fishery Conservation and Management Act; as amended, Public Law 109-479; 16 U.S.C. 1953; implemented at 50 CFR 679.50. Therefore unprocessed (raw) data can be shared only with authorized persons; however aggregated forms of the data are generally available.
User must read and fully comprehend the metadata prior to use. Data should not be used beyond the limits of the source scale. Acknowledgement of NOAA, as the source from which these data were obtained, in any publications and/or other representations of these data is suggested.
Controlled Theme Keywords
biota
Child Items
No Child Items for this record.
Contact Information
Point of Contact
Chuck Guthrie
chuck.guthrie@noaa.gov
Metadata Contact
Emily A Fergusson
emily.fergusson@noaa.gov
907-789-6613
Extents
-137.71° W,
-131.802° E,
58.367° N,
55.115° S
Southeast Alaska
2006
Item Identification
Title: | AFSC/ABL: 2006 Sockeye genetics |
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Short Name: | AFSC/ABL: 2006 Sockeye genetics |
Status: | Completed |
Publication Date: | Unknown |
Abstract: |
The purpose of this study was to genetically analyze axillary process samples from ~6,000 sockeye salmon harvested in the 2006 and 2007 Districts 101 gillnet and 104 purse seine sockeye fisheries to determine proportions of Canadian and U.S. fish. A SNP genetic baseline of 45 SNPs (41 markers as 3 groups of SNPs are linked) assayed in 84 sockeye populations from southeast Alaska and British Columbia was developed by the ADF&G. The 84 populations were grouped into 14 regions. With the exception of locus One_Serpin, which failed during genotyping, the same markers were evaluated in the baseline and mixtures. Stock proportions were estimated using a Bayesian mixture analysis. In addition to performing mixture analysis for the 2006 and 2007 fisheries, the sockeye baseline was also expanded as part of the 2007 project. Approximately 1700 fish from 21 locations were genotyped, which will be included in a future updated baseline. |
Purpose: |
This dataset contains the genotype information for approximately 1700 fish from 21 locations to determine proportions of Canadian and U.S. fish. |
Notes: |
Loaded by batch 3875, 12-18-2012 18:09 |
Keywords
Theme Keywords
Thesaurus | Keyword |
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ISO 19115 Topic Category |
biota
|
Spatial Keywords
Thesaurus | Keyword |
---|---|
UNCONTROLLED | |
Geographic Names Information System | Alaska |
Physical Location
Organization: | Auke Bay Laboratories |
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City: | Juneau |
State/Province: | AK |
Country: | US |
Data Set Information
Data Set Scope Code: | Data Set |
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Data Set Type: | Excel and SAS Dataset |
Maintenance Frequency: | None Planned |
Data Presentation Form: | Document (digital) |
Distribution Liability: |
For scientific, management, and regulation compliance purposes, these data are confidential under the Magnuson-Stevens Fishery Conservation and Management Act; as amended, Public Law 109-479; 16 U.S.C. 1953; implemented at 50 CFR 679.50. Therefore unprocessed (raw) data can be shared only with authorized persons; however aggregated forms of the data are generally available. |
Support Roles
Data Steward
Date Effective From: | 2015-10-01 |
---|---|
Date Effective To: | |
Contact (Person): | Guthrie, Chuck |
Email Address: | chuck.guthrie@noaa.gov |
Distributor
Date Effective From: | 2012-12-18 |
---|---|
Date Effective To: | |
Contact (Person): | Guthrie, Chuck |
Email Address: | chuck.guthrie@noaa.gov |
Metadata Contact
Date Effective From: | 2012-12-18 |
---|---|
Date Effective To: | |
Contact (Person): | Fergusson, Emily A |
Address: |
17109 Pt Lena Loop Road Juneau, AL |
Email Address: | emily.fergusson@noaa.gov |
Phone: | 907-789-6613 |
Originator
Date Effective From: | 2012-12-18 |
---|---|
Date Effective To: | |
Contact (Person): | Guthrie, Chuck |
Email Address: | chuck.guthrie@noaa.gov |
Point of Contact
Date Effective From: | 2012-12-18 |
---|---|
Date Effective To: | |
Contact (Person): | Guthrie, Chuck |
Email Address: | chuck.guthrie@noaa.gov |
Extents
Currentness Reference: | Ground Condition |
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Extent Group 1
Extent Group 1 / Geographic Area 1
W° Bound: | -137.71 | |
---|---|---|
E° Bound: | -131.802 | |
N° Bound: | 58.367 | |
S° Bound: | 55.115 | |
Description |
Southeast Alaska |
Extent Group 1 / Time Frame 1
Time Frame Type: | Discrete |
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Start: | 2006 |
Access Information
Security Class: | Unclassified |
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Data Access Procedure: |
N/A |
Data Access Constraints: |
For scientific, management, and regulation compliance purposes, these data are confidential under the Magnuson-Stevens Fishery Conservation and Management Act; as amended, Public Law 109-479; 16 U.S.C. 1953; implemented at 50 CFR 679.50. Therefore unprocessed (raw) data can be shared only with authorized persons; however aggregated forms of the data are generally available. |
Data Use Constraints: |
User must read and fully comprehend the metadata prior to use. Data should not be used beyond the limits of the source scale. Acknowledgement of NOAA, as the source from which these data were obtained, in any publications and/or other representations of these data is suggested. |
Distribution Information
Distribution 1
Download URL: | https://www.ncei.noaa.gov/ |
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Distributor: | |
Description: |
NCEI to be determined |
Technical Environment
Description: |
Microsoft Excel spreadsheet |
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Data Quality
Completeness Report: |
None |
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Quality Control Procedures Employed: |
Contact the dataset POC for full QA/QC methodology |
Data Management
Have Resources for Management of these Data Been Identified?: | Yes |
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Approximate Percentage of Budget for these Data Devoted to Data Management: | Unknown |
Do these Data Comply with the Data Access Directive?: | Yes |
Is Access to the Data Limited Based on an Approved Waiver?: | Yes |
If Distributor (Data Hosting Service) is Needed, Please Indicate: | yes |
Approximate Delay Between Data Collection and Dissemination: | unknown |
If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed: |
no delay |
Actual or Planned Long-Term Data Archive Location: | To Be Determined |
If To Be Determined, Unable to Archive, or No Archiving Intended, Explain: |
NCEI site yet to be determined |
Approximate Delay Between Data Collection and Archiving: | unknown |
How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive?: |
IT Security and Contingency Plan for the system establishes procedures and applies to the functions, operations, and resources necessary to recover and restore data as hosted in the Western Regional Support Center in Seattle, Washington, following a disruption. |
Lineage
Lineage Statement: |
Contact POC for full methodology |
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Catalog Details
Catalog Item ID: | 17259 |
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GUID: | gov.noaa.nmfs.inport:17259 |
Metadata Record Created By: | Doug Turnbull |
Metadata Record Created: | 2012-12-18 18:09+0000 |
Metadata Record Last Modified By: | SysAdmin InPortAdmin |
Metadata Record Last Modified: | 2023-05-30 18:10+0000 |
Metadata Record Published: | 2016-05-03 |
Owner Org: | AFSC |
Metadata Publication Status: | Published Externally |
Do Not Publish?: | N |
Metadata Last Review Date: | 2016-05-03 |
Metadata Review Frequency: | 1 Year |
Metadata Next Review Date: | 2017-05-03 |