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Short Citation:
Northwest Fisheries Science Center, 2022: Vibrio ecology in PNW - The Ecology of Vibrio parahaemolyticus in the Pacific Northwest: Implications for risk assessment and early warning systems, https://www.fisheries.noaa.gov/inport/item/17958.

Item Identification

Title: Vibrio ecology in PNW - The Ecology of Vibrio parahaemolyticus in the Pacific Northwest: Implications for risk assessment and early warning systems
Short Name: Vibrio ecology in PNW (The Ecology of Vibrio parahaemolyticus in the Pacific Northwest: Implications for risk assessment and early warning systems)
Status: Completed
Creation Date: 2007-06-01
Publication Date: 2017-02-23
Abstract:

Over the past decade, there has been a significant increase in Vibrio parahaemolyticus-related gastroenteritis from the consumption of raw oysters harvested in Washington state, partly attributed to increases in water temperatures. Such illnesses/outbreaks pose a threat to public health and result in severe economic losses to the shellfish growers. Increases in Vibrio populations due to changes in environmental conditions have been previously reported but the ecology of these bacteria and their interactions with the aquatic environment are not clearly understood.

We are investigating the influence of environmental variables on concentrations of potentially pathogenic and avirulent strains of V. parahaemolyticus in oysters as well as in water and plankton, focusing on harvest areas with historically higher incidences of the bacteria. In addition, we are examining the association of V. parahaemolyticus with co-isolated phytoplankton species. The goal of these studies is to gain a better understanding of the spatial, temporal, environmental, and bacterial genetic relationships that promote the selection of strains responsible for clinical V. parahaemolyticus infections, which may assist in the improvement of risk assessment strategies and mitigation tools to prevent disease outbreaks.

Time series data on pathogen abundance, temperature, salinity and sampling locations.

Purpose:

Raw/field data, Laboratory data

Notes:

Loaded by batch 4247, 01-29-2013 18:52

Supplemental Information:

Subject to Public Access to Research Results (PARR): Yes

Keywords

Theme Keywords

Thesaurus Keyword
UNCONTROLLED
None Pacific oysters
None pathogen
None Vibrio

Spatial Keywords

Thesaurus Keyword
UNCONTROLLED
None Grays Harbor
None Hood Canal
None NWFSC Montlake
None Willapa Bay

Instrument Keywords

Thesaurus Keyword
UNCONTROLLED
None Instrument Not Applicable

Physical Location

Organization: Northwest Fisheries Science Center
City: Seattle
State/Province: WA
Country: USA

Data Set Information

Data Set Scope Code: Data Set
Data Set Type: Spreadsheet
Data Presentation Form: Table (digital)

Support Roles

Data Steward

CC ID: 849052
Date Effective From: 2015-10-01
Date Effective To:
Contact (Person): Paranjpye, Rohinee N
Address: 2725 Montlake Blvd East
Seattle, WA 98112
Email Address: Rohinee.Paranjpye@noaa.gov
Phone: 206-860-3421
Fax: 206-860-3467

Distributor

CC ID: 849053
Date Effective From: 2015-10-01
Date Effective To:
Contact (Organization): Northwest Fisheries Science Center (NWFSC)
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
USA
Email Address: nmfs.nwfsc.metadata@noaa.gov
Phone: 206-860-3200
URL: NWFSC Home

Metadata Contact

CC ID: 849051
Date Effective From: 2015-10-01
Date Effective To:
Contact (Organization): Northwest Fisheries Science Center (NWFSC)
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
USA
Email Address: nmfs.nwfsc.metadata@noaa.gov
Phone: 206-860-3200
URL: NWFSC Home

Originator

CC ID: 849055
Date Effective From: 2015-10-01
Date Effective To:
Contact (Person): Paranjpye, Rohinee N
Address: 2725 Montlake Blvd East
Seattle, WA 98112
Email Address: Rohinee.Paranjpye@noaa.gov
Phone: 206-860-3421
Fax: 206-860-3467

Point of Contact

CC ID: 849054
Date Effective From: 2015-10-01
Date Effective To:
Contact (Person): Paranjpye, Rohinee N
Address: 2725 Montlake Blvd East
Seattle, WA 98112
Email Address: Rohinee.Paranjpye@noaa.gov
Phone: 206-860-3421
Fax: 206-860-3467

Extents

Extent Group 1

Extent Group 1 / Geographic Area 1

CC ID: 849061
W° Bound: -122.3062
E° Bound: -122.3062
N° Bound: 47.6449
S° Bound: 47.6449
Description

NWFSC Montlake: NWFSC Montlake lab, Seattle

Extent Group 1 / Time Frame 1

CC ID: 849060
Time Frame Type: Continuing
Start: 2007-06-01

Extent Group 2

Extent Group 2 / Geographic Area 1

CC ID: 849064
W° Bound: -123.9798
E° Bound: -123.9798
N° Bound: 46.5704
S° Bound: 46.5704
Description

Willapa Bay: Willapa Bay sampling locations

Extent Group 2 / Time Frame 1

CC ID: 849063
Time Frame Type: Continuing
Start: 2007-06-01

Extent Group 3

Extent Group 3 / Geographic Area 1

CC ID: 849067
W° Bound: -124.0346
E° Bound: -124.0346
N° Bound: 46.9773
S° Bound: 46.9773
Description

Grays Harbor: Grays Harbor sampling locations

Extent Group 3 / Time Frame 1

CC ID: 849066
Time Frame Type: Continuing
Start: 2007-06-01

Extent Group 4

Extent Group 4 / Geographic Area 1

CC ID: 849070
W° Bound: -122.8702
E° Bound: -122.8702
N° Bound: 47.6786
S° Bound: 47.6786
Description

Hood Canal: Hood Canal sampling locations

Extent Group 4 / Time Frame 1

CC ID: 849069
Time Frame Type: Continuing
Start: 2007-06-01

Access Information

Security Class: Unclassified
Data Access Procedure:

At this time, contact the Data Manager for information on obtaining access to this data set. In the near future, the NWFSC will strive to provide all non-sensitive data resources as a web service in order to meet the NOAA Data Access Policy Directive (https://nosc.noaa.gov/EDMC/PD.DA.php).

Data Access Constraints:

NA

Distribution Information

Distribution 1

CC ID: 849057
Start Date: 2017-02-23
End Date: Present
Download URL: https://www.webapps.nwfsc.noaa.gov/apex/parr/vibrio_parahaemolyticus_survey_washington_20072008/data/page/
Distributor: Northwest Fisheries Science Center (NWFSC) (2015-10-01 - Present)
File Name: Vibrio Parahaemolyticus Survey Washington 2007-200
Description:

Results of a survey for the bacterium Vibrio parahaemolyticus in oyster growing areas of Washington State, 2007-2008.

Distribution 2

CC ID: 849056
Start Date: 2017-02-23
End Date: Present
Download URL: https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/tables/table/vibrio_parahaemolyticus_survey_washington_20072008
Distributor: Northwest Fisheries Science Center (NWFSC) (2015-10-01 - Present)
File Name: Vibrio Parahaemolyticus Survey Washington 2007-200
Description:

Results of a survey for the bacterium Vibrio parahaemolyticus in oyster growing areas of Washington State, 2007-2008.

URLs

URL 1

CC ID: 849058
URL: https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/datasets/dataset/1763
Name: Vibrio ecology in PNW
URL Type:
Online Resource
File Resource Format: Web site
Description:

NWFSC Dataset Information page. Time series data on pathogen abundance, temperature, salinity and sampling locations

Technical Environment

Description:

Spreadsheet

Data Quality

Accuracy:

High

Quality Control Procedures Employed:

These data were collected and processed in accordance with established protocols and best practices under the direction of the project’s Principal Investigator. Contact the dataset Data Manager in section 3 for full QA/QC methodology.

Data Management

Have Resources for Management of these Data Been Identified?: No
Approximate Percentage of Budget for these Data Devoted to Data Management: 10
Do these Data Comply with the Data Access Directive?: No
Is Access to the Data Limited Based on an Approved Waiver?: No
If Distributor (Data Hosting Service) is Needed, Please Indicate: No
Approximate Delay Between Data Collection and Dissemination: 0 days
If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed:

No Delay

Actual or Planned Long-Term Data Archive Location: NCEI-MD
Approximate Delay Between Data Collection and Archiving: 365
How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive?:

The Northwest Fisheries Science Center facilitates backup and recovery of all data and IT components which are managed by IT Operations through the capture of static (point-in-time) backup data to physical media. Once data is captured to physical media (every 1-3 days), a duplicate is made and routinely (weekly) transported to an offsite archive facility where it is maintained throughout the data's applicable life-cycle.

Lineage

Lineage Statement:

NA

Child Items

Rubric scores updated every 15m

Rubric Score Type Title
Entity Vibrio Parahaemolyticus Survey Washington 2007-2008

Catalog Details

Catalog Item ID: 17958
GUID: gov.noaa.nmfs.inport:17958
Metadata Record Created By: Jeffrey W Cowen
Metadata Record Created: 2013-01-29 18:52+0000
Metadata Record Last Modified By: SysAdmin InPortAdmin
Metadata Record Last Modified: 2019-06-04 13:14+0000
Metadata Record Published: 2019-06-04
Owner Org: NWFSC
Metadata Publication Status: Published Externally
Do Not Publish?: N
Metadata Next Review Date: 2020-06-04