Vibrio ecology in PNW - The Ecology of Vibrio parahaemolyticus in the Pacific Northwest: Implications for risk assessment and early warning systems
Data Set (DS) | Northwest Fisheries Science Center (NWFSC)GUID: gov.noaa.nmfs.inport:17958 | Updated: May 15, 2025 | Published / External
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Summary
Short Citation
Northwest Fisheries Science Center, 2025: Vibrio ecology in PNW - The Ecology of Vibrio parahaemolyticus in the Pacific Northwest: Implications for risk assessment and early warning systems, https://www.fisheries.noaa.gov/inport/item/17958.
Full Citation Examples
Over the past decade, there has been a significant increase in Vibrio parahaemolyticus-related gastroenteritis from the consumption of raw oysters harvested in Washington state, partly attributed to increases in water temperatures. Such illnesses/outbreaks pose a threat to public health and result in severe economic losses to the shellfish growers. Increases in Vibrio populations due to changes in environmental conditions have been previously reported but the ecology of these bacteria and their interactions with the aquatic environment are not clearly understood.
We are investigating the influence of environmental variables on concentrations of potentially pathogenic and avirulent strains of V. parahaemolyticus in oysters as well as in water and plankton, focusing on harvest areas with historically higher incidences of the bacteria. In addition, we are examining the association of V. parahaemolyticus with co-isolated phytoplankton species. The goal of these studies is to gain a better understanding of the spatial, temporal, environmental, and bacterial genetic relationships that promote the selection of strains responsible for clinical V. parahaemolyticus infections, which may assist in the improvement of risk assessment strategies and mitigation tools to prevent disease outbreaks.
Time series data on pathogen abundance, temperature, salinity and sampling locations.
Distribution Information
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Results of a survey for the bacterium Vibrio parahaemolyticus in oyster growing areas of Washington State, 2007-2008.
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Results of a survey for the bacterium Vibrio parahaemolyticus in oyster growing areas of Washington State, 2007-2008.
NA
Child Items
Type | Title |
---|---|
Entity | Vibrio Parahaemolyticus Survey Washington 2007-2008 |
Contact Information
Point of Contact
Rohinee N Paranjpye
Rohinee.Paranjpye@noaa.gov
206-860-3421
Metadata Contact
Northwest Fisheries Science Center (NWFSC)
nmfs.nwfsc.metadata@noaa.gov
206-860-3200
NWFSC Home
Extents
-122.3062° W,
-122.3062° E,
47.6449° N,
47.6449° S
NWFSC Montlake: NWFSC Montlake lab, Seattle
2007-06-01 - Present
Item Identification
Title: | Vibrio ecology in PNW - The Ecology of Vibrio parahaemolyticus in the Pacific Northwest: Implications for risk assessment and early warning systems |
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Short Name: | Vibrio ecology in PNW (The Ecology of Vibrio parahaemolyticus in the Pacific Northwest: Implications for risk assessment and early warning systems) |
Status: | Completed |
Creation Date: | 2007-06-01 |
Publication Date: | 2017-02-23 |
Abstract: |
Over the past decade, there has been a significant increase in Vibrio parahaemolyticus-related gastroenteritis from the consumption of raw oysters harvested in Washington state, partly attributed to increases in water temperatures. Such illnesses/outbreaks pose a threat to public health and result in severe economic losses to the shellfish growers. Increases in Vibrio populations due to changes in environmental conditions have been previously reported but the ecology of these bacteria and their interactions with the aquatic environment are not clearly understood. We are investigating the influence of environmental variables on concentrations of potentially pathogenic and avirulent strains of V. parahaemolyticus in oysters as well as in water and plankton, focusing on harvest areas with historically higher incidences of the bacteria. In addition, we are examining the association of V. parahaemolyticus with co-isolated phytoplankton species. The goal of these studies is to gain a better understanding of the spatial, temporal, environmental, and bacterial genetic relationships that promote the selection of strains responsible for clinical V. parahaemolyticus infections, which may assist in the improvement of risk assessment strategies and mitigation tools to prevent disease outbreaks. Time series data on pathogen abundance, temperature, salinity and sampling locations. |
Purpose: |
Raw/field data, Laboratory data |
Notes: |
Loaded by batch 4247, 01-29-2013 18:52 |
Supplemental Information: |
Subject to Public Access to Research Results (PARR): Yes |
Keywords
Theme Keywords
Thesaurus | Keyword |
---|---|
UNCONTROLLED | |
None | Pacific oysters |
None | pathogen |
None | Vibrio |
Spatial Keywords
Thesaurus | Keyword |
---|---|
UNCONTROLLED | |
None | Grays Harbor |
None | Hood Canal |
None | NWFSC Montlake |
None | Willapa Bay |
Instrument Keywords
Thesaurus | Keyword |
---|---|
UNCONTROLLED | |
None | Instrument Not Applicable |
Physical Location
Organization: | Northwest Fisheries Science Center |
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City: | Seattle |
State/Province: | WA |
Country: | USA |
Data Set Information
Data Set Scope Code: | Data Set |
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Data Set Type: | Spreadsheet |
Data Presentation Form: | Table (digital) |
Support Roles
Data Steward
Date Effective From: | 2015-10-01 |
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Date Effective To: | |
Contact (Person): | Paranjpye, Rohinee N |
Address: |
2725 Montlake Blvd East Seattle, WA 98112 |
Email Address: | Rohinee.Paranjpye@noaa.gov |
Phone: | 206-860-3421 |
Fax: | 206-860-3467 |
Distributor
Date Effective From: | 2015-10-01 |
---|---|
Date Effective To: | |
Contact (Organization): | Northwest Fisheries Science Center (NWFSC) |
Address: |
2725 Montlake Boulevard East Seattle, WA 98112 USA |
Email Address: | nmfs.nwfsc.metadata@noaa.gov |
Phone: | 206-860-3200 |
URL: | NWFSC Home |
Metadata Contact
Date Effective From: | 2015-10-01 |
---|---|
Date Effective To: | |
Contact (Organization): | Northwest Fisheries Science Center (NWFSC) |
Address: |
2725 Montlake Boulevard East Seattle, WA 98112 USA |
Email Address: | nmfs.nwfsc.metadata@noaa.gov |
Phone: | 206-860-3200 |
URL: | NWFSC Home |
Originator
Date Effective From: | 2015-10-01 |
---|---|
Date Effective To: | |
Contact (Person): | Paranjpye, Rohinee N |
Address: |
2725 Montlake Blvd East Seattle, WA 98112 |
Email Address: | Rohinee.Paranjpye@noaa.gov |
Phone: | 206-860-3421 |
Fax: | 206-860-3467 |
Point of Contact
Date Effective From: | 2015-10-01 |
---|---|
Date Effective To: | |
Contact (Person): | Paranjpye, Rohinee N |
Address: |
2725 Montlake Blvd East Seattle, WA 98112 |
Email Address: | Rohinee.Paranjpye@noaa.gov |
Phone: | 206-860-3421 |
Fax: | 206-860-3467 |
Extents
Extent Group 1
Extent Group 1 / Geographic Area 1
W° Bound: | -122.3062 | |
---|---|---|
E° Bound: | -122.3062 | |
N° Bound: | 47.6449 | |
S° Bound: | 47.6449 | |
Description |
NWFSC Montlake: NWFSC Montlake lab, Seattle |
Extent Group 1 / Time Frame 1
Time Frame Type: | Continuing |
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Start: | 2007-06-01 |
Extent Group 2
Extent Group 2 / Geographic Area 1
W° Bound: | -123.9798 | |
---|---|---|
E° Bound: | -123.9798 | |
N° Bound: | 46.5704 | |
S° Bound: | 46.5704 | |
Description |
Willapa Bay: Willapa Bay sampling locations |
Extent Group 2 / Time Frame 1
Time Frame Type: | Continuing |
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Start: | 2007-06-01 |
Extent Group 3
Extent Group 3 / Geographic Area 1
W° Bound: | -124.0346 | |
---|---|---|
E° Bound: | -124.0346 | |
N° Bound: | 46.9773 | |
S° Bound: | 46.9773 | |
Description |
Grays Harbor: Grays Harbor sampling locations |
Extent Group 3 / Time Frame 1
Time Frame Type: | Continuing |
---|---|
Start: | 2007-06-01 |
Extent Group 4
Extent Group 4 / Geographic Area 1
W° Bound: | -122.8702 | |
---|---|---|
E° Bound: | -122.8702 | |
N° Bound: | 47.6786 | |
S° Bound: | 47.6786 | |
Description |
Hood Canal: Hood Canal sampling locations |
Extent Group 4 / Time Frame 1
Time Frame Type: | Continuing |
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Start: | 2007-06-01 |
Access Information
Security Class: | Unclassified |
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Data Access Procedure: |
At this time, contact the Data Manager for information on obtaining access to this data set. In the near future, the NWFSC will strive to provide all non-sensitive data resources as a web service in order to meet the NOAA Data Access Policy Directive (https://nosc.noaa.gov/EDMC/PD.DA.php). |
Data Access Constraints: |
NA |
Distribution Information
Distribution 1
Start Date: | 2017-02-23 |
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End Date: | Present |
Download URL: | https://www.webapps.nwfsc.noaa.gov/apex/parr/vibrio_parahaemolyticus_survey_washington_20072008/data/page/ |
Distributor: | Northwest Fisheries Science Center (NWFSC) (2015-10-01 - Present) |
File Name: | Vibrio Parahaemolyticus Survey Washington 2007-200 |
Description: |
Results of a survey for the bacterium Vibrio parahaemolyticus in oyster growing areas of Washington State, 2007-2008. |
Distribution 2
Start Date: | 2017-02-23 |
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End Date: | Present |
Download URL: | https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/tables/table/vibrio_parahaemolyticus_survey_washington_20072008 |
Distributor: | Northwest Fisheries Science Center (NWFSC) (2015-10-01 - Present) |
File Name: | Vibrio Parahaemolyticus Survey Washington 2007-200 |
Description: |
Results of a survey for the bacterium Vibrio parahaemolyticus in oyster growing areas of Washington State, 2007-2008. |
URLs
URL 1
URL: | https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/datasets/dataset/1763 |
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Name: | Vibrio ecology in PNW |
URL Type: |
Online Resource
|
File Resource Format: | Web site |
Description: |
NWFSC Dataset Information page. Time series data on pathogen abundance, temperature, salinity and sampling locations |
Technical Environment
Description: |
Spreadsheet |
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Data Quality
Accuracy: |
High |
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Quality Control Procedures Employed: |
These data were collected and processed in accordance with established protocols and best practices under the direction of the project’s Principal Investigator. Contact the dataset Data Manager in section 3 for full QA/QC methodology. |
Data Management
Have Resources for Management of these Data Been Identified?: | No |
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Approximate Percentage of Budget for these Data Devoted to Data Management: | 10 |
Do these Data Comply with the Data Access Directive?: | No |
Is Access to the Data Limited Based on an Approved Waiver?: | No |
If Distributor (Data Hosting Service) is Needed, Please Indicate: | No |
Approximate Delay Between Data Collection and Dissemination: | 0 days |
If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed: |
No Delay |
Actual or Planned Long-Term Data Archive Location: | NCEI-MD |
Approximate Delay Between Data Collection and Archiving: | 365 |
How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive?: |
The Northwest Fisheries Science Center facilitates backup and recovery of all data and IT components which are managed by IT Operations through the capture of static (point-in-time) backup data to physical media. Once data is captured to physical media (every 1-3 days), a duplicate is made and routinely (weekly) transported to an offsite archive facility where it is maintained throughout the data's applicable life-cycle. |
Lineage
Lineage Statement: |
NA |
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Child Items
Rubric scores updated every 15m
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Type | Title |
---|---|---|
Entity | Vibrio Parahaemolyticus Survey Washington 2007-2008 |
Catalog Details
Catalog Item ID: | 17958 |
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GUID: | gov.noaa.nmfs.inport:17958 |
Metadata Record Created By: | Jeffrey W Cowen |
Metadata Record Created: | 2013-01-29 18:52+0000 |
Metadata Record Last Modified By: | SysAdmin InPortAdmin |
Metadata Record Last Modified: | 2025-05-15 19:16+0000 |
Metadata Record Published: | 2019-06-04 |
Owner Org: | NWFSC |
Metadata Publication Status: | Published Externally |
Do Not Publish?: | N |
Metadata Last Review Date: | 2019-06-04 |
Metadata Review Frequency: | 1 Year |
Metadata Next Review Date: | 2020-06-04 |