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Vibrio Parahaemolyticus Survey Washington 2007-2008

Entity (ENT)  |  Northwest Fisheries Science Center (NWFSC)
GUID: gov.noaa.nmfs.inport:36975  |  Updated: August 9, 2022  |  Published / External 
Summary
Item Identification
Entity Info
Data Attributes
Catalog Details

Summary

Abstract

Results of a survey for the bacterium Vibrio parahaemolyticus in oyster growing areas of Washington State, 2007-2008.

Description

Results of a survey for the bacterium Vibrio parahaemolyticus in oyster growing areas of Washington State, 2007-2008.

Entity Information

Entity Type
Spreadsheet

Data Attribute / Type Description
Sample #
NUMBER 		Unique identifier for the sample.
Date collected
DATE 		The date on which physical data and/or biological sample was collected.
Sampling time
DATE 		Time of sampling given as military time. Units for values are Hour:Minute.
Time of low tide
DATE 		The most recent low tide closest to the time of the sampling given as military time. Units for values are Hour:Minute.
Julian day
NUMBER 		The day number for a year. January 1 is Julian day 1 while February 1 is Julian day 32, etc.
Site code
VARCHAR2 		A code assigned to the the sampling site by the Washington State Department of Health.
Site name
VARCHAR2 		The name of the sampling site.
Site latitude
NUMBER 		The site latitude, which along with the site longitude unambiguously specifies the site location.
Site longitude
NUMBER 		The site longitude,which along with the site latitude unambiguously specifies the site location.
Air temperature
NUMBER 		Air temperature at the sampling site. Units for values are Degrees Centigrade (C).
Surface water temperature
NUMBER 		The temperature of the surface water at the sampling site. Units for values are Degrees Centigrade (C).
Water temperature at -3 feet
NUMBER 		The temperature of water 3 feet below the surface at the sampling site. Units for values are Degrees Centigrade (C).
Salinity
NUMBER 		Salinity of the water at the sampling site. Units for values are Parts per thousand (ppt).
Chlorophyll
NUMBER 		The chlorophyll content of the water at the sampling site. Units for values are Micrograms per liter of water.
Oyster tissue temperature
NUMBER 		The temperature of oyster tissue collected at the sampling site. Units for values are Degrees Centigrade (C).
Total Vibrio parahaemolyticus, water
NUMBER 		Each cell of Vibrio parahaemolyticus (Vp) contains one copy of a gene called tl. Each water sample was analyzed for the number of copies of tl giving a direct measure of the density of Vp in the water column. Not all Vp are virulent. Units for values are Number of cells of Vp per 100 grams of water.
tdh+ Vibrio parahaemolyticus, water
NUMBER 		The tdh gene is associated with virulence. Each cell of Vp can contain more than one copy of tdh. Therefore, the number of copies of tdh can exceed the number of copies of tl in some samples. Units for values are Number of cells of potentially pathogenic Vp per 100 grams of water.
Total Vibrio parahaemolyticus, net tow
NUMBER 		At most sites, a large volume of water was filtered through a plankton net with a mesh size of 200 micron. This concentrates particate matter such as plankton to which Vp bacteria can attach. As before, the number of copeis of the tl gene serves to give a direct measure of the density of Vp associated with particles in the water column. Units for values are Number of cells of Vp per 100 grams of water retained in the net tow.
tdh+ Vibrio parahaemolyticus, net tow
NUMBER 		The number of copies of the virulence-assciated tdh gene detected in net tow samples. Units for values are Number of copies of tdh present per 100 grams of water retained in the net tow.
Total Vibrio parahemolyticus, oyster
NUMBER 		Oyster tissue is homogenized and analyzed for total V. parahaemolyticus by detection of the the tl gene by the "Most Probable Number (MPN)" method. Units for values are The MPN of Vp per gram of oyster tissue.
tdh+ Vibrio parahaemolyticus, oyster
NUMBER 		The most probable number of copies of the virulence-associated tdh gene detected in oyster tissue. Units for values are The MPN of copies of tdh per gram of oyster tissue.

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Item Identification

Title: Vibrio Parahaemolyticus Survey Washington 2007-2008
Short Name: Vibrio Parahaemolyticus Survey Washington 2007-2008
Status: Planned
Abstract:

Results of a survey for the bacterium Vibrio parahaemolyticus in oyster growing areas of Washington State, 2007-2008.

Entity Information

Entity Type: Spreadsheet
Active Version?: Yes
Schema Name: PARR
Description:

Results of a survey for the bacterium Vibrio parahaemolyticus in oyster growing areas of Washington State, 2007-2008.

Data Attributes

Attribute Summary

Rubric Score Primary Key? Name Type Description
100
 Sample # NUMBER Unique identifier for the sample.
100
 Date collected DATE The date on which physical data and/or biological sample was collected.
100
 Sampling time DATE Time of sampling given as military time. Units for values are Hour:Minute.
100
 Time of low tide DATE The most recent low tide closest to the time of the sampling given as military time. Units for values are Hour:Minute.
100
 Julian day NUMBER The day number for a year. January 1 is Julian day 1 while February 1 is Julian day 32, etc.
100
 Site code VARCHAR2 A code assigned to the the sampling site by the Washington State Department of Health.
100
 Site name VARCHAR2 The name of the sampling site.
100
 Site latitude NUMBER The site latitude, which along with the site longitude unambiguously specifies the site location.
100
 Site longitude NUMBER The site longitude,which along with the site latitude unambiguously specifies the site location.
100
 Air temperature NUMBER Air temperature at the sampling site. Units for values are Degrees Centigrade (C).
100
 Surface water temperature NUMBER The temperature of the surface water at the sampling site. Units for values are Degrees Centigrade (C).
100
 Water temperature at -3 feet NUMBER The temperature of water 3 feet below the surface at the sampling site. Units for values are Degrees Centigrade (C).
100
 Salinity NUMBER Salinity of the water at the sampling site. Units for values are Parts per thousand (ppt).
100
 Chlorophyll NUMBER The chlorophyll content of the water at the sampling site. Units for values are Micrograms per liter of water.
100
 Oyster tissue temperature NUMBER The temperature of oyster tissue collected at the sampling site. Units for values are Degrees Centigrade (C).
100
 Total Vibrio parahaemolyticus, water NUMBER Each cell of Vibrio parahaemolyticus (Vp) contains one copy of a gene called tl. Each water sample was analyzed for the number of copies of tl giving a direct measure of the density of Vp in the water column. Not all Vp are virulent. Units for values are Number of cells of Vp per 100 grams of water.
100
 tdh+ Vibrio parahaemolyticus, water NUMBER The tdh gene is associated with virulence. Each cell of Vp can contain more than one copy of tdh. Therefore, the number of copies of tdh can exceed the number of copies of tl in some samples. Units for values are Number of cells of potentially pathogenic Vp per 100 grams of water.
100
 Total Vibrio parahaemolyticus, net tow NUMBER At most sites, a large volume of water was filtered through a plankton net with a mesh size of 200 micron. This concentrates particate matter such as plankton to which Vp bacteria can attach. As before, the number of copeis of the tl gene serves to give a direct measure of the density of Vp associated with particles in the water column. Units for values are Number of cells of Vp per 100 grams of water retained in the net tow.
100
 tdh+ Vibrio parahaemolyticus, net tow NUMBER The number of copies of the virulence-assciated tdh gene detected in net tow samples. Units for values are Number of copies of tdh present per 100 grams of water retained in the net tow.
100
 Total Vibrio parahemolyticus, oyster NUMBER Oyster tissue is homogenized and analyzed for total V. parahaemolyticus by detection of the the tl gene by the "Most Probable Number (MPN)" method. Units for values are The MPN of Vp per gram of oyster tissue.
100
 tdh+ Vibrio parahaemolyticus, oyster NUMBER The most probable number of copies of the virulence-associated tdh gene detected in oyster tissue. Units for values are The MPN of copies of tdh per gram of oyster tissue.

Attribute Details

Sample #

CC ID: 731045
Seq. Order: 1
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

Unique identifier for the sample.
General Data Type: NUMBER

Date collected

CC ID: 731046
Seq. Order: 2
Data Storage Type: DATE
Required: No
Primary Key: No
Status: Active
Description:

The date on which physical data and/or biological sample was collected.
General Data Type: DATE

Sampling time

CC ID: 731047
Seq. Order: 3
Data Storage Type: DATE
Required: No
Primary Key: No
Status: Active
Description:

Time of sampling given as military time. Units for values are Hour:Minute.
General Data Type: DATE
Unit of Measure: Hour:Minute

Time of low tide

CC ID: 731048
Seq. Order: 4
Data Storage Type: DATE
Required: No
Primary Key: No
Status: Active
Description:

The most recent low tide closest to the time of the sampling given as military time. Units for values are Hour:Minute.
General Data Type: DATE
Unit of Measure: Hour:Minute

Julian day

CC ID: 731049
Seq. Order: 5
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

The day number for a year. January 1 is Julian day 1 while February 1 is Julian day 32, etc.
General Data Type: NUMBER

Site code

CC ID: 731050
Seq. Order: 6
Data Storage Type: VARCHAR2
Required: No
Primary Key: No
Status: Active
Description:

A code assigned to the the sampling site by the Washington State Department of Health.
General Data Type: VARCHAR2

Site name

CC ID: 731051
Seq. Order: 7
Data Storage Type: VARCHAR2
Required: No
Primary Key: No
Status: Active
Description:

The name of the sampling site.
General Data Type: VARCHAR2

Site latitude

CC ID: 731052
Seq. Order: 8
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

The site latitude, which along with the site longitude unambiguously specifies the site location.
General Data Type: NUMBER

Site longitude

CC ID: 731053
Seq. Order: 9
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

The site longitude,which along with the site latitude unambiguously specifies the site location.
General Data Type: NUMBER

Air temperature

CC ID: 731054
Seq. Order: 10
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

Air temperature at the sampling site. Units for values are Degrees Centigrade (C).
General Data Type: NUMBER
Unit of Measure: Degrees Centigrade (C)

Surface water temperature

CC ID: 731055
Seq. Order: 11
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

The temperature of the surface water at the sampling site. Units for values are Degrees Centigrade (C).
General Data Type: NUMBER
Unit of Measure: Degrees Centigrade (C)

Water temperature at -3 feet

CC ID: 731056
Seq. Order: 12
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

The temperature of water 3 feet below the surface at the sampling site. Units for values are Degrees Centigrade (C).
General Data Type: NUMBER
Unit of Measure: Degrees Centigrade (C)

Salinity

CC ID: 731057
Seq. Order: 13
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

Salinity of the water at the sampling site. Units for values are Parts per thousand (ppt).
General Data Type: NUMBER
Unit of Measure: Parts per thousand (ppt)

Chlorophyll

CC ID: 731058
Seq. Order: 14
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

The chlorophyll content of the water at the sampling site. Units for values are Micrograms per liter of water.
General Data Type: NUMBER
Unit of Measure: Micrograms per liter of water

Oyster tissue temperature

CC ID: 731059
Seq. Order: 15
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

The temperature of oyster tissue collected at the sampling site. Units for values are Degrees Centigrade (C).
General Data Type: NUMBER
Unit of Measure: Degrees Centigrade (C)

Total Vibrio parahaemolyticus, water

CC ID: 731060
Seq. Order: 16
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

Each cell of Vibrio parahaemolyticus (Vp) contains one copy of a gene called tl. Each water sample was analyzed for the number of copies of tl giving a direct measure of the density of Vp in the water column. Not all Vp are virulent. Units for values are Number of cells of Vp per 100 grams of water.
General Data Type: NUMBER
Unit of Measure: Number of cells of Vp per 100 grams of water

tdh+ Vibrio parahaemolyticus, water

CC ID: 731061
Seq. Order: 17
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

The tdh gene is associated with virulence. Each cell of Vp can contain more than one copy of tdh. Therefore, the number of copies of tdh can exceed the number of copies of tl in some samples. Units for values are Number of cells of potentially pathogenic Vp per 100 grams of water.
General Data Type: NUMBER
Unit of Measure: Number of cells of potentially pathogenic Vp 100 gm of water

Total Vibrio parahaemolyticus, net tow

CC ID: 731062
Seq. Order: 18
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

At most sites, a large volume of water was filtered through a plankton net with a mesh size of 200 micron. This concentrates particate matter such as plankton to which Vp bacteria can attach. As before, the number of copeis of the tl gene serves to give a direct measure of the density of Vp associated with particles in the water column. Units for values are Number of cells of Vp per 100 grams of water retained in the net tow.
General Data Type: NUMBER
Unit of Measure: Number of cells of Vp per 100 gm of water retained net tow.

tdh+ Vibrio parahaemolyticus, net tow

CC ID: 731063
Seq. Order: 19
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

The number of copies of the virulence-assciated tdh gene detected in net tow samples. Units for values are Number of copies of tdh present per 100 grams of water retained in the net tow.
General Data Type: NUMBER
Unit of Measure: Number of copies of tdh per 100 gm of water retained net tow

Total Vibrio parahemolyticus, oyster

CC ID: 731064
Seq. Order: 20
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

Oyster tissue is homogenized and analyzed for total V. parahaemolyticus by detection of the the tl gene by the "Most Probable Number (MPN)" method. Units for values are The MPN of Vp per gram of oyster tissue.
General Data Type: NUMBER
Unit of Measure: The MPN of Vp per gram of oyster tissue.

tdh+ Vibrio parahaemolyticus, oyster

CC ID: 731065
Seq. Order: 21
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

The most probable number of copies of the virulence-associated tdh gene detected in oyster tissue. Units for values are The MPN of copies of tdh per gram of oyster tissue.
General Data Type: NUMBER
Unit of Measure: The MPN of copies of tdh per gram of oyster tissue.

Catalog Details

Catalog Item ID: 36975
GUID: gov.noaa.nmfs.inport:36975
Metadata Record Created By: Jeffrey W Cowen
Metadata Record Created: 2017-02-28 13:01+0000
Metadata Record Last Modified By: SysAdmin InPortAdmin
Metadata Record Last Modified: 2022-08-09 17:11+0000
Metadata Record Published: 2018-02-27
Owner Org: NWFSC
Metadata Publication Status: Published Externally
Do Not Publish?: N
Metadata Last Review Date: 2018-02-27
Metadata Review Frequency: 1 Year
Metadata Next Review Date: 2019-02-27