Data Management Plan
GUID: gov.noaa.nmfs.inport:26895 | Published / External
Data Management Plan
DMP Template v2.0.1 (2015-01-01)
Please provide the following information, and submit to the NOAA DM Plan Repository.Reference to Master DM Plan (if applicable)
As stated in Section IV, Requirement 1.3, DM Plans may be hierarchical. If this DM Plan inherits provisions from a higher-level DM Plan already submitted to the Repository, then this more-specific Plan only needs to provide information that differs from what was provided in the Master DM Plan.
1. General Description of Data to be Managed
This data set is the results of a laboratory experiment. Juvenile red king crab and Tanner crab were reared in individual containers for nearly 200 days in flowing control (pH 8.0), pH 7.8, and pH 7.5 seawater at ambient temperatures (range 4.4-11.9 C). Survival, growth, and morphology were measured throughout the experiment. At the end of the experiment, calcium concentration was measured in each crab and the dry mass and condition index of each crab were determined.
Notes: Only a maximum of 4000 characters will be included.
Notes: Data collection is considered ongoing if a time frame of type "Continuous" exists.
Notes: All time frames from all extent groups are included.
Kodiak Fisheries Research Center
Notes: All geographic areas from all extent groups are included.
(e.g., digital numeric data, imagery, photographs, video, audio, database, tabular data, etc.)
(e.g., satellite, airplane, unmanned aerial system, radar, weather station, moored buoy, research vessel, autonomous underwater vehicle, animal tagging, manual surveys, enforcement activities, numerical model, etc.)
2. Point of Contact for this Data Management Plan (author or maintainer)
Notes: The name of the Person of the most recent Support Role of type "Metadata Contact" is used. The support role must be in effect.
Notes: The name of the Organization of the most recent Support Role of type "Metadata Contact" is used. This field is required if applicable.
3. Responsible Party for Data Management
Program Managers, or their designee, shall be responsible for assuring the proper management of the data produced by their Program. Please indicate the responsible party below.
Notes: The name of the Person of the most recent Support Role of type "Data Steward" is used. The support role must be in effect.
4. Resources
Programs must identify resources within their own budget for managing the data they produce.
5. Data Lineage and Quality
NOAA has issued Information Quality Guidelines for ensuring and maximizing the quality, objectivity, utility, and integrity of information which it disseminates.
(describe or provide URL of description):
Process Steps:
- For this experiment, we used filtered seawater pumped into the laboratory from Trident Basin (Kodiak, AK). The experimental setup used flow-through water at ambient temperature and salinity. As we did not control temperature, the conditions the crabs were exposed to mimicked the natural fluctuations to which crabs would naturally be exposed. We used seawater acidified with CO2 to pHs based on projected future levels of atmospheric CO2 and the predicted change in seawater pH associated with it: 1) ambient pH (about 8.0), 2) 7.8 pH c. 2100, and 3) 7.5 pH c. 2200. To obtain the desired treatment levels CO2 was bubbled in ambient local seawater to a pH of 5.5. This water was mixed with seawater to the treatment pHs using a peristaltic pump whose speed was controlled by a pH probe in a head tank similar. Water from the head tank was supplied to the experimental containers. When the measured pH in the experimental containers deviated from the nominal pH levels by more than 0.02 units the settings on the pH probe were adjusted accordingly.
- Red king crabs were supplied by the Alutiiq Pride Shellfish Hatchery. Ovigerous red king crabs were captured in Bristol Bay, Alaska, in commercial pots during the winter of 2009. Larvae were reared to the first crab stage before being transported to the Kodiak lab in insulated shipping containers. Juvenile Tanner crabs were caught in a modified benthic sled with a 1 m mouth opening in local Kodiak waters. Throughout the experiment, the crabs were fed to excess on a gel diet of “Gelly Belly ” (Florida Aqua Farms, Inc., Dade City, Florida, USA) with Cyclop-eeze powder and pollock bone powder (United States Department of Agriculture, Agricultural Research Service, Kodiak, Alaska, USA). Crabs were fed three times a week and old food was removed just prior to feeding. The experiment was performed in three tanks (120 (L) x 60 (W) x 60 (H) cm), each of which was randomly assigned a treatment. Ninety crabs per species were randomly assigned to each of three treatments (30 crabs per species per treatment). Each crab was placed in an individual holding cell made of a piece of PVC pipe (diameter 5.1 cm) with mesh glued on the bottom. Flow-through water from the head tanks was provided to each cell. The Tanner crab experiment was started on June 4, 2010, and the red king crab experiment on June 10, 2010. Daily, five randomly selected cells per treatment were monitored for pH and temperature. pH was measured using a Ross Combination glass bulb pH electrode (Thermo Electron Corporation, Beverly, MA) calibrated with Tris buffer on the pHF scale. Weekly water samples were taken from the head tanks, poisoned with mercuric chloride, and sent to an analytical laboratory for salinity, dissolved inorganic carbon (DIC), and alkalinity analysis. DIC was determined using a CM5014 Coulometer with a CM5130 Acidification Module (UIC Inc., Joliet, IL) using Certified Reference Material from the Dickson Laboratory (Scripps Institute, San Diego, CA). Alkalinity was measured via open cell titration. Crabs were checked daily for molting or death. Dead crabs and exuvia were removed from the tanks for morphometric analysis. The carapace from each exuvia and dead crab was carefully removed and photographed under a stereomicroscope. Partway through the experiment, we noted that it had become difficult to remove the carapace off dead crabs, particularly in the low pH treatments, so we started photographing dead crabs before attempting to remove the carapace. If successful, we photographed the carapace as well and used that for image analysis; otherwise, we used the image of the dead crab. Image analysis was performed using Image-Pro Plus v. 6.00.260 imaging software (Media Cybernetics, Inc., Bethesda, Maryland, USA) calibrated with a micrometer. On red king crab we measured carapace width, carapace length, rostrum base width, orbital spine width, and the first spine length. On Tanner crab, we measured carapace width CW), carapace length (CL), carapace length to the rostrum, carapace length to the eye orbit, rostrum base width, rostrum length, orbital spine width, and orbital spine length. The wet mass of each crab, after it was carefully blotted dry, was measured at the beginning of the experiment and 7 days after each molt. The experiments were ended on December 20, 2010, when temperatures had dropped low enough that the crabs were no longer molting frequently. At the end of the experiment, all crabs were sacrificed by freezing. The crabs were imaged for morphometric analysis as above. Each crab was dried to a constant mass at 60 C to obtain the dry mass. Calcium, magnesium, potassium, and sodium content in each crab was determined at an analytical laboratory using a Dionex Ion Chromatography system. The conditions of the crab at the end of the experiment were calculated as the condition index (also known as the body mass index) defined as the dry mass in grams divided by the CL^3 (red king crab) or CW^3 (Tanner crab) in millimeters.
(describe or provide URL of description):
All data was checked for accuracy, examined for outliers, and data outside of the range.
6. Data Documentation
The EDMC Data Documentation Procedural Directive requires that NOAA data be well documented, specifies the use of ISO 19115 and related standards for documentation of new data, and provides links to resources and tools for metadata creation and validation.
Missing/invalid information:
- 1.7. Data collection method(s)
- 7.2. Name of organization of facility providing data access
(describe or provide URL of description):
7. Data Access
NAO 212-15 states that access to environmental data may only be restricted when distribution is explicitly limited by law, regulation, policy (such as those applicable to personally identifiable information or protected critical infrastructure information or proprietary trade information) or by security requirements. The EDMC Data Access Procedural Directive contains specific guidance, recommends the use of open-standard, interoperable, non-proprietary web services, provides information about resources and tools to enable data access, and includes a Waiver to be submitted to justify any approach other than full, unrestricted public access.
There are no legal restrictions on access to the data. They reside in public domain and can be freely distributed.
Notes: The name of the Organization of the most recent Support Role of type "Distributor" is used. The support role must be in effect. This information is not required if an approved access waiver exists for this data.
Notes: This field is required if a Distributor has not been specified.
Notes: All URLs listed in the Distribution Info section will be included. This field is required if applicable.
unknown
No delay
Notes: This field is required if applicable.
8. Data Preservation and Protection
The NOAA Procedure for Scientific Records Appraisal and Archive Approval describes how to identify, appraise and decide what scientific records are to be preserved in a NOAA archive.
(Specify NCEI-MD, NCEI-CO, NCEI-NC, NCEI-MS, World Data Center (WDC) facility, Other, To Be Determined, Unable to Archive, or No Archiving Intended)
Notes: This field is required if archive location is World Data Center or Other.
Notes: This field is required if archive location is To Be Determined, Unable to Archive, or No Archiving Intended.
Notes: Physical Location Organization, City and State are required, or a Location Description is required.
Discuss data back-up, disaster recovery/contingency planning, and off-site data storage relevant to the data collection
IT Security and Contingency Plan for the system establishes procedures and applies to the functions, operations, and resources necessary to recover and restore data as hosted in the Western Regional Support Center in Seattle, Washington, following a disruption.
9. Additional Line Office or Staff Office Questions
Line and Staff Offices may extend this template by inserting additional questions in this section.