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Alaska Fisheries Science Center Metadata Librar... > Resource Assessment and Conservation Engineerin... > Shellfish Assessment Program > AFSC/RACE/SAP/Shavey: DNA extraction from archi... >

Blood smear data

Entity (ENT)  |  Alaska Fisheries Science Center (AFSC)
GUID: gov.noaa.nmfs.inport:35939  |  Updated: August 9, 2022  |  Published / External 
Summary
Item Identification
Entity Info
Data Attributes
Catalog Details

Summary

Abstract

Crab morphometrics and collection data, blood smear extraction and PCR results

Description

Blood Smear DNA Extraction

Entity Information

Entity Type
Spreadsheet

Data Attribute / Type Description
ID
NUMBER 		A sequence of unique integers that identifies each blood smear
SPNO
NUMBER 		1 or 8-digit number assigned to each collected crab
SPECIES_NAME
TEXT 		The scientific name of the organism
SEX
NUMBER 		1-digit numeric code assigned to a particular sex of crab
SIZE
NUMBER 		Carapace width measurement of collected crabs
SHELL_COND
NUMBER 		1-digit numeric code describing carapace condition of crab
COLLECTION_LOCATION
TEXT 		General location of collected crab sample
YEAR
NUMBER 		Year specimen was collected
SMEAR_STAINED
TEXT 		Smear staining treatment
SMEAR_COVERSLIPPED
NUMBER 		1-digit numeric code assigned to smear coverslipping treatment
SMEAR_RESULT
NUMBER 		1-digit numeric code assigned to blood smear result
SMEAR_RATING
NUMBER 		Parasite presence rating on smear
16S_PRIMER
NUMBER 		1-digit numeric code assigned to when Mt DNA 16S Primer Set was used
16S_AMPLIFICATION
NUMBER 		1-digit numeric code assigned to Mt DNA 16S amplification result
COI_PRIMER
NUMBER 		1-digit numeric code assigned to when Mt DNA COI Primer Set was used
COI_AMPLIFICATION
NUMBER 		1-digit numeric code assigned to Mt DNA COI amplification result
18S_PRIMER
NUMBER 		1-digit numeric code assigned to when rDNA 18S Primer Set was used
18S_AMPLIFICATION
NUMBER 		1-digit numeric code assigned to rDNA 18S amplification result
ITS_PRIMER
NUMBER 		1-digit numeric code assigned to when rDNA ITS Primer Set was used
ITS_AMPLIFICATION
NUMBER 		1-digit numeric code assigned to rDNA ITS amplification result
STATISTICAL
NUMBER 		1-digit numeric code assigned to when sample was statistically analyzed

Child Items

No Child Items for this record.

Contact Information

No contact information is available for this record.

Please contact the owner organization (AFSC) for inquiries on this record.

Item Identification

Title: Blood smear data
Short Name: Blood smear data
Status: Completed
Abstract:

Crab morphometrics and collection data, blood smear extraction and PCR results
Notes:

Loaded by FGDC Metadata Uploader, batch 9574, 12-13-2016 12:44

Entity Information

Entity Type: Spreadsheet
Description:

Blood Smear DNA Extraction

Data Attributes

Attribute Summary

Rubric Score Primary Key? Name Type Description
100
 ID NUMBER A sequence of unique integers that identifies each blood smear
100
 SPNO NUMBER 1 or 8-digit number assigned to each collected crab
100
 SPECIES_NAME TEXT The scientific name of the organism
100
 SEX NUMBER 1-digit numeric code assigned to a particular sex of crab
100
 SIZE NUMBER Carapace width measurement of collected crabs
100
 SHELL_COND NUMBER 1-digit numeric code describing carapace condition of crab
100
 COLLECTION_LOCATION TEXT General location of collected crab sample
100
 YEAR NUMBER Year specimen was collected
100
 SMEAR_STAINED TEXT Smear staining treatment
100
 SMEAR_COVERSLIPPED NUMBER 1-digit numeric code assigned to smear coverslipping treatment
100
 SMEAR_RESULT NUMBER 1-digit numeric code assigned to blood smear result
100
 SMEAR_RATING NUMBER Parasite presence rating on smear
100
 16S_PRIMER NUMBER 1-digit numeric code assigned to when Mt DNA 16S Primer Set was used
100
 16S_AMPLIFICATION NUMBER 1-digit numeric code assigned to Mt DNA 16S amplification result
100
 COI_PRIMER NUMBER 1-digit numeric code assigned to when Mt DNA COI Primer Set was used
100
 COI_AMPLIFICATION NUMBER 1-digit numeric code assigned to Mt DNA COI amplification result
100
 18S_PRIMER NUMBER 1-digit numeric code assigned to when rDNA 18S Primer Set was used
100
 18S_AMPLIFICATION NUMBER 1-digit numeric code assigned to rDNA 18S amplification result
100
 ITS_PRIMER NUMBER 1-digit numeric code assigned to when rDNA ITS Primer Set was used
100
 ITS_AMPLIFICATION NUMBER 1-digit numeric code assigned to rDNA ITS amplification result
100
 STATISTICAL NUMBER 1-digit numeric code assigned to when sample was statistically analyzed

Attribute Details

ID

CC ID: 362783
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

A sequence of unique integers that identifies each blood smear
Allowed Values: 1 - 76

SPNO

CC ID: 362784
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1 or 8-digit number assigned to each collected crab
Allowed Values: 1 - 20047100

SPECIES_NAME

CC ID: 362785
Data Storage Type: TEXT
Required: No
Primary Key: No
Status: Active
Description:

The scientific name of the organism

SEX

CC ID: 362786
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to a particular sex of crab
Null Value: blank
Null Value Meaning:

Null or blank fields in data represent no sex information reported for crab specimen
Allowed Values: 1 - 3

SIZE

CC ID: 362787
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

Carapace width measurement of collected crabs
Unit of Measure: mm
Null Value: blank
Null Value Meaning:

Null or blank fields in data represent no size information reported for crab specimen
Allowed Values: 24 - 140

SHELL_COND

CC ID: 362788
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code describing carapace condition of crab
Allowed Values: 0, 1, 2, 3, 4, 9

COLLECTION_LOCATION

CC ID: 362789
Data Storage Type: TEXT
Required: No
Primary Key: No
Status: Active
Description:

General location of collected crab sample

YEAR

CC ID: 362790
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

Year specimen was collected
Allowed Values: 1988 - 2004

SMEAR_STAINED

CC ID: 362791
Data Storage Type: TEXT
Required: No
Primary Key: No
Status: Active
Description:

Smear staining treatment

SMEAR_COVERSLIPPED

CC ID: 362792
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to smear coverslipping treatment
Allowed Values: 0 - 1

SMEAR_RESULT

CC ID: 362793
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to blood smear result
Allowed Values: 0 - 1

SMEAR_RATING

CC ID: 362794
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

Parasite presence rating on smear
Allowed Values: 1 - 8

16S_PRIMER

CC ID: 362795
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to when Mt DNA 16S Primer Set was used
Allowed Values: 0 - 1

16S_AMPLIFICATION

CC ID: 362796
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to Mt DNA 16S amplification result
Allowed Values: 0 - 9

COI_PRIMER

CC ID: 362797
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to when Mt DNA COI Primer Set was used
Allowed Values: 0 - 1

COI_AMPLIFICATION

CC ID: 362798
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to Mt DNA COI amplification result
Allowed Values: 0 - 9

18S_PRIMER

CC ID: 362799
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to when rDNA 18S Primer Set was used
Allowed Values: 0 - 1

18S_AMPLIFICATION

CC ID: 362800
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to rDNA 18S amplification result
Allowed Values: 0 - 9

ITS_PRIMER

CC ID: 362801
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to when rDNA ITS Primer Set was used
Allowed Values: 0 - 1

ITS_AMPLIFICATION

CC ID: 362802
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to rDNA ITS amplification result
Allowed Values: 0 - 9

STATISTICAL

CC ID: 362803
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to when sample was statistically analyzed
Allowed Values: 0 - 1

Catalog Details

Catalog Item ID: 35939
GUID: gov.noaa.nmfs.inport:35939
Metadata Record Created By: Christie Lang
Metadata Record Created: 2016-12-13 12:44+0000
Metadata Record Last Modified By: SysAdmin InPortAdmin
Metadata Record Last Modified: 2022-08-09 17:11+0000
Metadata Record Published: 2016-12-16
Owner Org: AFSC
Metadata Publication Status: Published Externally
Do Not Publish?: N
Metadata Last Review Date: 2016-12-16
Metadata Review Frequency: 1 Year
Metadata Next Review Date: 2017-12-16