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Alaska Fisheries Science Center Metadata Librar... > Resource Assessment and Conservation Engineerin... > Shellfish Assessment Program > AFSC/RACE/SAP/Shavey: DNA extraction from archi... >

Blood smear data

Entity (ENT)  |  Alaska Fisheries Science Center (AFSC)
GUID: gov.noaa.nmfs.inport:35939  |  Updated: August 9, 2022  |  Published / External 

Item Identification

Title: Blood smear data
Short Name: Blood smear data
Status: Completed
Abstract:

Crab morphometrics and collection data, blood smear extraction and PCR results
Notes:

Loaded by FGDC Metadata Uploader, batch 9574, 12-13-2016 12:44

Entity Information

Entity Type: Spreadsheet
Description:

Blood Smear DNA Extraction

Data Attributes

Attribute Summary

Rubric Score Primary Key? Name Type Description
100
 ID NUMBER A sequence of unique integers that identifies each blood smear
100
 SPNO NUMBER 1 or 8-digit number assigned to each collected crab
100
 SPECIES_NAME TEXT The scientific name of the organism
100
 SEX NUMBER 1-digit numeric code assigned to a particular sex of crab
100
 SIZE NUMBER Carapace width measurement of collected crabs
100
 SHELL_COND NUMBER 1-digit numeric code describing carapace condition of crab
100
 COLLECTION_LOCATION TEXT General location of collected crab sample
100
 YEAR NUMBER Year specimen was collected
100
 SMEAR_STAINED TEXT Smear staining treatment
100
 SMEAR_COVERSLIPPED NUMBER 1-digit numeric code assigned to smear coverslipping treatment
100
 SMEAR_RESULT NUMBER 1-digit numeric code assigned to blood smear result
100
 SMEAR_RATING NUMBER Parasite presence rating on smear
100
 16S_PRIMER NUMBER 1-digit numeric code assigned to when Mt DNA 16S Primer Set was used
100
 16S_AMPLIFICATION NUMBER 1-digit numeric code assigned to Mt DNA 16S amplification result
100
 COI_PRIMER NUMBER 1-digit numeric code assigned to when Mt DNA COI Primer Set was used
100
 COI_AMPLIFICATION NUMBER 1-digit numeric code assigned to Mt DNA COI amplification result
100
 18S_PRIMER NUMBER 1-digit numeric code assigned to when rDNA 18S Primer Set was used
100
 18S_AMPLIFICATION NUMBER 1-digit numeric code assigned to rDNA 18S amplification result
100
 ITS_PRIMER NUMBER 1-digit numeric code assigned to when rDNA ITS Primer Set was used
100
 ITS_AMPLIFICATION NUMBER 1-digit numeric code assigned to rDNA ITS amplification result
100
 STATISTICAL NUMBER 1-digit numeric code assigned to when sample was statistically analyzed

Attribute Details

ID

CC ID: 362783
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

A sequence of unique integers that identifies each blood smear
Allowed Values: 1 - 76

SPNO

CC ID: 362784
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1 or 8-digit number assigned to each collected crab
Allowed Values: 1 - 20047100

SPECIES_NAME

CC ID: 362785
Data Storage Type: TEXT
Required: No
Primary Key: No
Status: Active
Description:

The scientific name of the organism

SEX

CC ID: 362786
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to a particular sex of crab
Null Value: blank
Null Value Meaning:

Null or blank fields in data represent no sex information reported for crab specimen
Allowed Values: 1 - 3

SIZE

CC ID: 362787
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

Carapace width measurement of collected crabs
Unit of Measure: mm
Null Value: blank
Null Value Meaning:

Null or blank fields in data represent no size information reported for crab specimen
Allowed Values: 24 - 140

SHELL_COND

CC ID: 362788
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code describing carapace condition of crab
Allowed Values: 0, 1, 2, 3, 4, 9

COLLECTION_LOCATION

CC ID: 362789
Data Storage Type: TEXT
Required: No
Primary Key: No
Status: Active
Description:

General location of collected crab sample

YEAR

CC ID: 362790
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

Year specimen was collected
Allowed Values: 1988 - 2004

SMEAR_STAINED

CC ID: 362791
Data Storage Type: TEXT
Required: No
Primary Key: No
Status: Active
Description:

Smear staining treatment

SMEAR_COVERSLIPPED

CC ID: 362792
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to smear coverslipping treatment
Allowed Values: 0 - 1

SMEAR_RESULT

CC ID: 362793
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to blood smear result
Allowed Values: 0 - 1

SMEAR_RATING

CC ID: 362794
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

Parasite presence rating on smear
Allowed Values: 1 - 8

16S_PRIMER

CC ID: 362795
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to when Mt DNA 16S Primer Set was used
Allowed Values: 0 - 1

16S_AMPLIFICATION

CC ID: 362796
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to Mt DNA 16S amplification result
Allowed Values: 0 - 9

COI_PRIMER

CC ID: 362797
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to when Mt DNA COI Primer Set was used
Allowed Values: 0 - 1

COI_AMPLIFICATION

CC ID: 362798
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to Mt DNA COI amplification result
Allowed Values: 0 - 9

18S_PRIMER

CC ID: 362799
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to when rDNA 18S Primer Set was used
Allowed Values: 0 - 1

18S_AMPLIFICATION

CC ID: 362800
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to rDNA 18S amplification result
Allowed Values: 0 - 9

ITS_PRIMER

CC ID: 362801
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to when rDNA ITS Primer Set was used
Allowed Values: 0 - 1

ITS_AMPLIFICATION

CC ID: 362802
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to rDNA ITS amplification result
Allowed Values: 0 - 9

STATISTICAL

CC ID: 362803
Data Storage Type: NUMBER
Required: No
Primary Key: No
Status: Active
Description:

1-digit numeric code assigned to when sample was statistically analyzed
Allowed Values: 0 - 1

Catalog Details

Catalog Item ID: 35939
GUID: gov.noaa.nmfs.inport:35939
Metadata Record Created By: Christie Lang
Metadata Record Created: 2016-12-13 12:44+0000
Metadata Record Last Modified By: SysAdmin InPortAdmin
Metadata Record Last Modified: 2022-08-09 17:11+0000
Metadata Record Published: 2016-12-16
Owner Org: AFSC
Metadata Publication Status: Published Externally
Do Not Publish?: N
Metadata Last Review Date: 2016-12-16
Metadata Review Frequency: 1 Year
Metadata Next Review Date: 2017-12-16