NEPR Principle Component Analysis - NOAA TIFF Image
Data Set (DS) | National Centers for Coastal Ocean Science (NCCOS)GUID: gov.noaa.nmfs.inport:38778 | Updated: May 30, 2023 | Published / External
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Summary
Short Citation
National Centers for Coastal Ocean Science, 2025: NEPR Principle Component Analysis - NOAA TIFF Image, https://www.fisheries.noaa.gov/inport/item/38778.
Full Citation Examples
This GeoTiff is a representation of seafloor topography in Northeast Puerto Rico derived from a bathymetry model with a principle component analysis (PCA). The area covered includes the shallow water area (0-60m deep) of the Northeast Ecological Reserves: including the waters off of Fajardo and Luqillo, to the Former Roosevelt Roads Navy Base, the Vieques Sound, La Cordillera Reserve, the Luis Pena Reserve, and the waters around Culebra Island. The PCA image was created using Envi 5.1, and is based on nine morphometric derivatives of the bathymetry, such as slope, curvature and rugosity. The bathymetry model was created by integrating soundings from several different sources (1900-2013), including high resolution coastal LiDAR, NOAA Single-beam and multibeam bathymetry, and historical lead line soundings, into a multi resolution (4m, 20m, 100m) depth model. The PCA image was used to delineate the different shallow water benthic habitats of NEPR.
Distribution Information
No Distributions available.
Access Constraints:Please cite any use of this data.
Note: NOT TO BE USED FOR NAVIGATION. These data were prepared by an agency of the United States Government. Neither the United States Government nor any agency thereof, nor any of their employees, make any warranty, expressed or implied, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed in this report, or represents that its use would not infringe privately owned rights. Reference therein to any specific commercial product, process, or service by trade name, trademark, manufacturer, or otherwise does not necessarily constitute or imply its endorsement, recommendation, or favoring by the United States Government or any agency thereof. Any views and opinions of authors expressed herein do not necessarily state or reflect those of the United States Government or any agency thereof. Although all data have been used by NOAA, no warranty, expressed or implied, is made by NOAA as to the accuracy of the data and/or related materials. The act of distribution shall not constitute any such warranty, and no responsibility is assumed by NOAA in the use of these data or related materials.
Controlled Theme Keywords
elevation, environment, geoscientificInformation, imageryBaseMapsEarthCover, oceans
Child Items
No Child Items for this record.
Contact Information
Point of Contact
NCCOS Scientific Data Coordinator
NCCOS.data@noaa.gov
Metadata Contact
NCCOS Scientific Data Coordinator
NCCOS.data@noaa.gov
Extents
-65.759998° W,
-65.168596° E,
18.446613° N,
18.196796° S
2013-10 - 2013-11
Item Identification
Title: | NEPR Principle Component Analysis - NOAA TIFF Image |
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Short Name: | Metadata_NEPR_PrincipleComponentAnalysis_2015 |
Status: | Completed |
Publication Date: | 2015-02 |
Abstract: |
This GeoTiff is a representation of seafloor topography in Northeast Puerto Rico derived from a bathymetry model with a principle component analysis (PCA). The area covered includes the shallow water area (0-60m deep) of the Northeast Ecological Reserves: including the waters off of Fajardo and Luqillo, to the Former Roosevelt Roads Navy Base, the Vieques Sound, La Cordillera Reserve, the Luis Pena Reserve, and the waters around Culebra Island. The PCA image was created using Envi 5.1, and is based on nine morphometric derivatives of the bathymetry, such as slope, curvature and rugosity. The bathymetry model was created by integrating soundings from several different sources (1900-2013), including high resolution coastal LiDAR, NOAA Single-beam and multibeam bathymetry, and historical lead line soundings, into a multi resolution (4m, 20m, 100m) depth model. The PCA image was used to delineate the different shallow water benthic habitats of NEPR. |
Purpose: |
The PCA, multibeam bathymetry, WorldView-2 Satellite imagery and ground validation imagery were used to create benthic habitat maps, helping NOAA meet its mapping commitment to the US Coral Reef Task Force. The resulting publicly-distributed data is also a contribution to the greater scientific community interested in the Caribbean seafloor. The spatial products developed from this bathymetry model will: (1) inform local managers as to the current distribution of resources, (2) provide a point of comparison for past and future mapping efforts, (3) help locate sensitive marine communities, and (4) guide monitoring efforts and prioritize management actions. |
Notes: |
552 |
Keywords
Theme Keywords
Thesaurus | Keyword |
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ISO 19115 Topic Category |
elevation
|
ISO 19115 Topic Category |
environment
|
ISO 19115 Topic Category |
geoscientificInformation
|
ISO 19115 Topic Category |
imageryBaseMapsEarthCover
|
ISO 19115 Topic Category |
oceans
|
UNCONTROLLED | |
CoRIS Discovery Thesaurus | Geographic Information > Bathymetry |
CoRIS Theme Thesaurus | EARTH SCIENCE > Biosphere > Aquatic Habitat > Reef Habitat > Description |
CoRIS Theme Thesaurus | EARTH SCIENCE > Oceans > Bathymetry/Seafloor Topography > Bathymetry |
NOS Data Explorer Topic Category | Bathymetry/Topography |
None | bathymetry |
None | benthic |
None | biogeography |
None | caribbean sea |
None | coastal ocean science |
None | coral |
None | gis |
None | grid |
None | habitat |
None | mbes |
None | multibeam |
None | nancy foster |
None | noaa |
None | northeast ecological reserve |
None | principle component analysis |
None | puerto rico |
None | raster |
None | reef |
None | seafloor |
None | sonar |
Temporal Keywords
Thesaurus | Keyword |
---|---|
UNCONTROLLED | |
None | 2013 |
Spatial Keywords
Thesaurus | Keyword |
---|---|
UNCONTROLLED | |
placekt: CoRIS Place Thesaurus | COUNTRY/TERRITORY > United States of America > Puerto Rico |
None | northeast grand reserve |
None | vieques sound |
Physical Location
Organization: | National Centers for Coastal Ocean Science |
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City: | Silver Spring |
State/Province: | MD |
Data Set Information
Data Set Scope Code: | Data Set |
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Maintenance Frequency: | As Needed |
Data Presentation Form: | raster digital data |
Distribution Liability: |
These data were prepared by an agency of the United States Government. Neither the United States Government nor any agency thereof, nor any of their employees, make any warranty, expressed or implied, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed in this report, or represents that its use would not infringe privately owned rights. Reference therein to any specific commercial product, process, or service by trade name, trademark, manufacturer, or otherwise does not necessarily constitute or imply its endorsement, recommendation, or favoring by the United States Government or any agency thereof. Any views and opinions of authors expressed herein do not necessarily state or reflect those of the United States Government or any agency thereof. Although all data have been used by NOAA, no warranty, expressed or implied, is made by NOAA as to the accuracy of the data and/or related materials. The act of distribution shall not constitute any such warranty, and no responsibility is assumed by NOAA in the use of these data or related materials. |
Data Set Credit: | Department of Commerce (DOC), National Oceanic and Atmospheric Administration (NOAA), National Ocean Service (NOS), National Centers for Coastal Ocean Science (NCCOS), Center for Coastal Monitoring and Assessment (CCMA), Biogeography Branch |
Support Roles
Data Steward
Date Effective From: | 2015-02 |
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Date Effective To: | |
Contact (Position): | NCCOS Scientific Data Coordinator |
Email Address: | NCCOS.data@noaa.gov |
Distributor
Date Effective From: | 2015-02 |
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Date Effective To: | |
Contact (Position): | NCCOS Scientific Data Coordinator |
Email Address: | NCCOS.data@noaa.gov |
Metadata Contact
Date Effective From: | 2015-02 |
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Date Effective To: | |
Contact (Position): | NCCOS Scientific Data Coordinator |
Email Address: | NCCOS.data@noaa.gov |
Point of Contact
Date Effective From: | 2015-02 |
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Date Effective To: | |
Contact (Position): | NCCOS Scientific Data Coordinator |
Email Address: | NCCOS.data@noaa.gov |
Principal Investigator
Date Effective From: | 2015-02 |
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Date Effective To: | |
Contact (Person): | Battista, Tim |
Email Address: | tim.battista@noaa.gov |
Extents
Currentness Reference: | Ground Condition |
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Extent Group 1
Extent Group 1 / Geographic Area 1
W° Bound: | -65.759998 | |
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E° Bound: | -65.168596 | |
N° Bound: | 18.446613 | |
S° Bound: | 18.196796 |
Extent Group 1 / Time Frame 1
Time Frame Type: | Range |
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Start: | 2013-10 |
End: | 2013-11 |
Spatial Information
Spatial Representation
Representations Used
Grid: | Yes |
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Grid Representation 1
Dimension Count: | 3 | ||||
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Cell Geometry: | Area | ||||
Transformation Parameters Available?: | No | ||||
Axis Dimension 1 |
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Axis Dimension 2 |
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Axis Dimension 3 |
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Access Information
Security Class: | Unclassified |
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Data Access Constraints: |
Please cite any use of this data. |
Data Use Constraints: |
Note: NOT TO BE USED FOR NAVIGATION. These data were prepared by an agency of the United States Government. Neither the United States Government nor any agency thereof, nor any of their employees, make any warranty, expressed or implied, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed in this report, or represents that its use would not infringe privately owned rights. Reference therein to any specific commercial product, process, or service by trade name, trademark, manufacturer, or otherwise does not necessarily constitute or imply its endorsement, recommendation, or favoring by the United States Government or any agency thereof. Any views and opinions of authors expressed herein do not necessarily state or reflect those of the United States Government or any agency thereof. Although all data have been used by NOAA, no warranty, expressed or implied, is made by NOAA as to the accuracy of the data and/or related materials. The act of distribution shall not constitute any such warranty, and no responsibility is assumed by NOAA in the use of these data or related materials. |
URLs
URL 1
URL: | http://coastalscience.noaa.gov/projects/detail?key=258 |
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URL Type: |
Online Resource
|
Activity Log
Activity Log 1
Activity Date/Time: | 2015-07-17 |
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Description: |
Date that the source FGDC record was last modified. |
Activity Log 2
Activity Date/Time: | 2017-04-05 |
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Description: |
Converted from FGDC Content Standard for Digital Geospatial Metadata (version FGDC-STD-001-1998) using 'fgdc_to_inport_xml.pl' script. Contact Tyler Christensen (NOS) for details. |
Activity Log 3
Activity Date/Time: | 2017-09-13 |
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Description: |
Partial upload of Spatial Info section only. |
Activity Log 4
Activity Date/Time: | 2017-11-01 |
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Description: |
Replaced entire Lineage section to populate new Source Contribution field. |
Activity Log 5
Activity Date/Time: | 2018-02-08 |
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Description: |
Partial upload of Positional Accuracy fields only. |
Technical Environment
Description: |
Microsoft Windows 7; ESRI ArcCatalog 10.1 |
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Data Quality
Horizontal Positional Accuracy: |
See NOAA Technical Memorandum: Benthic Habitats of Northeast Puerto Rico and Culebra Island |
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Vertical Positional Accuracy: |
See NOAA Technical Memorandum: Benthic Habitats of Northeast Puerto Rico and Culebra Island |
Completeness Report: |
This geotiff was created by integrating all of the available bathymetry sources downloaded from NGDC 2013, and included data from different time periods (1900-2013), remote sensing platforms, and spatial resolutions within the area of interest. |
Conceptual Consistency: |
All users should independently analyze the dataset according to their own needs and standards to determine data usability. |
Lineage
Sources
NEPR Bathymetry Model - 4m
Contact Name: | Department of Commerce (DOC), National Oceanic and Atmospheric Administration (NOAA), National Ocean Service (NOS), National Centers for Coastal Ocean Science (NCCOS), Center for Coastal Monitoring and Assessment (CCMA), Biogeography Branch |
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Publish Date: | 2013-11-01 |
Extent Type: | Discrete |
Extent Start Date/Time: | 2013-10 |
Source Contribution: |
NGDC Bathymetry Datasets of Northeast Puerto Rico | Source Geospatial Form: raster digital data | Type of Source Media: digital geodatabase |
NEPR Morphometric Layers - 4m
Contact Name: | Department of Commerce (DOC), National Oceanic and Atmospheric Administration (NOAA), National Ocean Service (NOS), National Centers for Coastal Ocean Science (NCCOS), Center for Coastal Monitoring and Assessment (CCMA), Biogeography Branch |
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Publish Date: | 2013-11-01 |
Extent Type: | Discrete |
Extent Start Date/Time: | 2013-10 |
Source Contribution: |
NEPR Bathymetry Model | Source Geospatial Form: raster digital data | Type of Source Media: digital geodatabase |
NEPR Principle Component Analysis - 4m
Contact Name: | Department of Commerce (DOC), National Oceanic and Atmospheric Administration (NOAA), National Ocean Service (NOS), National Centers for Coastal Ocean Science (NCCOS), Center for Coastal Monitoring and Assessment (CCMA), Biogeography Branch |
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Publish Date: | 2013-11-01 |
Extent Type: | Discrete |
Extent Start Date/Time: | 2013-10 |
Source Contribution: |
NEPR Morphometric Layers | Source Geospatial Form: raster digital data | Type of Source Media: digital geodatabase |
Process Steps
Process Step 1
Description: |
Bathymetry datasets within the Northeast Reserve area of interest were acquired through the NGDC data viewer and were vertically referenced to the NOAA MLLW tidal datum. The Bathymetry datasets were used to create three bathymetry models (resolution 4m, 20m, and 100m) using kriging in Surfer. The three layers were stacked with the highest resolution on top and merged to one multiresolution surface. Simple kriging in ArcGIS was used to minimize the edge interpolation effects between the three models. The stacked multiresolution bathymetry model and uncertainty surface was up-sampled to 4m resolution using a spline function to create the final bathymetry model. | Source Produced: NEPR Bathymetry Model - 4m |
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Process Date/Time: | 2013-10-01 00:00:00 |
Source: | NEPR Bathymetry Model - 4m |
Process Step 2
Description: |
The NEPR Bathymetry model was processed using the ArcGIS Spatial Analyst Toolbox into derivative morphometric layers: slope, slope of slope, rugosity, curvature, curvature profile, curvature plan, standard deviation, and mean bathymetry. The morphometric layers were then stacked into a 9 layer raster dataset in Envi 5.1, which was then used for the principle component analysis. | Source Produced: NEPR Morphometric Layers - 4m |
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Process Date/Time: | 2013-10-01 00:00:00 |
Source: | NEPR Bathymetry Model - 4m |
Process Step 3
Description: |
The stacked morphometric layers were then statistically analyzed by the eigenvalues for covariance in Envi 5.1. This combines all of the layers and shows the variations and complexity of the seafloor terrain, which highlights the different habitats. The result was a 3-band geotiff image. The PCA image was then used to delineate features and help create the benthic habitat map. | Source Produced: NEPR Principle Component Analysis - 4m |
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Process Date/Time: | 2013-11-01 00:00:00 |
Source: | NEPR Morphometric Layers - 4m |
Catalog Details
Catalog Item ID: | 38778 |
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GUID: | gov.noaa.nmfs.inport:38778 |
Metadata Record Created By: | Tyler Christensen |
Metadata Record Created: | 2017-04-05 12:48+0000 |
Metadata Record Last Modified By: | SysAdmin InPortAdmin |
Metadata Record Last Modified: | 2023-05-30 18:10+0000 |
Metadata Record Published: | 2018-02-08 |
Owner Org: | NCCOS |
Metadata Publication Status: | Published Externally |
Do Not Publish?: | N |
Metadata Last Review Date: | 2018-02-08 |
Metadata Review Frequency: | 1 Year |
Metadata Next Review Date: | 2019-02-08 |