National Status and Trends: Bioeffects Program - Sabine Lake, Texas Database
Data Set (DS) | National Centers for Coastal Ocean Science (NCCOS)GUID: gov.noaa.nmfs.inport:39077 | Updated: May 15, 2025 | Published / External
Keywords
Theme Keywords
| Thesaurus | Keyword |
|---|---|
| ISO 19115 Topic Category |
biota
|
| ISO 19115 Topic Category |
environment
|
| UNCONTROLLED | |
| NOS Data Explorer Topic Category | Environmental Monitoring |
| None | amphipod |
| None | analytes |
| None | benthic |
| None | bioassay |
| None | butyltins |
| None | chemical |
| None | contaminants |
| None | date |
| None | estuary |
| None | infauna |
| None | inorganic |
| None | latitude |
| None | location |
| None | longitude |
| None | Microtox |
| None | NCCOS Research Data Type > Field Observation |
| None | NCCOS Research Priority > Long-term Monitoring |
| None | NCCOS Research Priority > Stressors, Impacts, Mitigation, and Restoration (SIMR) |
| None | NCCOS Research Topic > Bioeffects/Toxicity |
| None | NCCOS Research Topic > Chemical Contaminants |
| None | NCCOS Research Topic > Monitoring |
| None | organic |
| None | organochlorines |
| None | P450 human reporter gene system |
| None | PAH |
| None | parameter |
| None | PCB |
| None | pesticides |
| None | polychlorinated biphenyls |
| None | polynuclear aromatic hydrocarbons |
| None | region |
| None | sea urchin fertilization |
| None | sediment |
| None | Site |
| None | state |
| None | station |
| None | toxicity |
Spatial Keywords
| Thesaurus | Keyword |
|---|---|
| Global Change Master Directory (GCMD) Location Keywords |
OCEAN > ATLANTIC OCEAN > NORTH ATLANTIC OCEAN > GULF OF AMERICA
|
| UNCONTROLLED | |
| None | Gulf of Mexico |
| None | Gulf of Mexico Coast |
| None | NCCOS Research Location > Geographic Area > Coastal Ocean |
| None | NCCOS Research Location > Region > Gulf of Mexico |
| None | NCCOS Research Location > U.S. States and Territories > Texas |
| None | Sabine Lake |
| None | Texas |
| None | United States |
Physical Location
| Organization: | National Centers for Coastal Ocean Science |
|---|---|
| City: | Silver Spring |
| State/Province: | MD |
Data Set Information
| Data Set Scope Code: | Data Set |
|---|---|
| Maintenance Frequency: | None Planned |
| Entity Attribute Overview: |
The dataset is composed of relational files each listed below. The "SITES" data file reports information regarding the planned sampling locations and the actual locations. The geographical information provided for a sampling site (the estuary stratum and site) is useful when interpreting the results of other data files. Link for the SITES data http://ccma.nos.noaa.gov/about/coast/nsandt/ba/Sites/SAL_Site.txt The "INDICATOR" data file reports the results of analyses for chemical/microbial analytes, toxicity endpoints, and benthic infauna indices. Link for the INDICATOR data dictionary http://ccma.nos.noaa.gov/about/coast/nsandt/download.aspx |
| Entity Attribute Detail Citation: |
NOAA National Status and Trends Program |
| Distribution Liability: |
These data were prepared by an agency of the United States Government. Neither the United States Government nor any agency thereof, nor any of their employees, make any warranty, expressed or implied, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed in this report, or represents that its use would not infringe privately owned rights. Reference therein to any specific commercial product, process, or service by trade name, trademark, manufacturer, or otherwise does not necessarily constitute or imply its endorsement, recommendation, or favoring by the United States Government or any agency thereof. Any views and opinions of authors expressed herein do not necessarily state or reflect those of the United States Government or any agency thereof. Although all data have been used by NOAA, no warranty, expressed or implied, is made by NOAA as to the accuracy of the data and/or related materials. The act of distribution shall not constitute any such warranty, and no responsibility is assumed by NOAA in the use of these data or related materials. |
Support Roles
Data Steward
| Date Effective From: | 2008-05-01 |
|---|---|
| Date Effective To: | |
| Contact (Position): | NCCOS Scientific Data Coordinator |
| Address: | |
| Email Address: | NCCOS.data@noaa.gov |
Distributor
| Date Effective From: | 2008-05-01 |
|---|---|
| Date Effective To: | |
| Contact (Position): | NCCOS Scientific Data Coordinator |
| Address: | |
| Email Address: | NCCOS.data@noaa.gov |
Metadata Contact
| Date Effective From: | 2008-05-01 |
|---|---|
| Date Effective To: | |
| Contact (Position): | NCCOS Scientific Data Coordinator |
| Address: | |
| Email Address: | NCCOS.data@noaa.gov |
Point of Contact
| Date Effective From: | 2008-05-01 |
|---|---|
| Date Effective To: | |
| Contact (Position): | NCCOS Scientific Data Coordinator |
| Address: | |
| Email Address: | NCCOS.data@noaa.gov |
Principal Investigator
| Date Effective From: | 2008-05-01 |
|---|---|
| Date Effective To: | |
| Contact (Person): | Piniak, Greg |
| Address: | |
| Email Address: | greg.piniak@noaa.gov |
Extents
| Currentness Reference: | Ground Condition |
|---|
Extent Group 1
Extent Group 1 / Geographic Area 1
| W° Bound: | -94.08783 | |
|---|---|---|
| E° Bound: | -93.72916 | |
| N° Bound: | 30.0917 | |
| S° Bound: | 29.6167 |
Extent Group 1 / Time Frame 1
| Time Frame Type: | Discrete |
|---|---|
| Start: | 1995 |
Access Information
| Security Class: | Unclassified |
|---|---|
| Data Access Constraints: |
None |
| Data Use Constraints: |
NOAA requests that all individuals who download NOAA data acknowledge the source of these data in any reports, papers, or presentations. If you publish these data, please include a statement similar to: "Some or all of the data described in this article were produced by the "NOAA's Ocean Service through its National Status and Trends Program (NSandT)" |
Distribution Information
Distribution 1
| Download URL: | https://products.coastalscience.noaa.gov/collections/ltmonitoring/nsandt/default.aspx |
|---|---|
| Distributor: | |
| Description: |
Live Data and Maps |
| File Type (Deprecated): | ASCII |
| Distribution Format: | Text (Unstructured) |
Distribution 2
| Download URL: | https://products.coastalscience.noaa.gov/collections/ltmonitoring/nsandt/default.aspx |
|---|---|
| Distributor: | |
| Description: |
Live Data and Maps |
| File Type (Deprecated): | XML |
| Distribution Format: | XML (Structured Text) |
URLs
URL 1
| URL: | https://products.coastalscience.noaa.gov/collections/ltmonitoring/nsandt/default.aspx |
|---|---|
| URL Type: |
Online Resource
|
URL 2
| URL: | https://coastalscience.noaa.gov/projects/detail?key=237 |
|---|---|
| URL Type: |
Online Resource
|
Activity Log
Activity Log 1
| Activity Date/Time: | 2016-09-21 |
|---|---|
| Description: |
Date that the source FGDC record was last modified. |
Activity Log 2
| Activity Date/Time: | 2017-04-05 |
|---|---|
| Description: |
Converted from Content Standard for Digital Geospatial Metadata (version FGDC-STD-001-1998) using 'fgdc_to_inport_xml.pl' script. Contact Tyler Christensen (NOS) for details. |
Data Quality
| Accuracy: |
MEASUREMENT QUALITY OBJECTIVESSite location - Field logistics were conducted aboard the NOAA Ship Ferrell and its launch. Vessel positioning and navigation were aided with a differential-corrected, Global Positioning System (GPS) unit and a compensated LORAN C unit. The two systems generally agreed well when both were operational. Coordinates are expressed in units to the nearest 0.0001 decimal degrees. An acceptable tolerance goal for siting was that the sampling location be established within 0.2nm (+/- 120ft) of the given coordinates. In the event the vessel could not navigate to the site (i.e., too shallow) or the bottom type was not appropriate (i.e., rock or shellfish bed) then the first alternate site was substituted. In the event the first alternate could not be sampled then the second alternate site was sampled. Organic and Inorganic Contaminants - The measurement quality objectives of the Sabine Lake Project specify accuracy and precision requirements of 30% for organic analytes and 15% for inorganic analytes in sediment samples. Water column measurements - Depth was recorded from the vessel's instrumentation to the nearest 0.1 foot.Benthic taxonomy-The minimum acceptable sorting efficiency was 95%. The minimum acceptable taxonomic efficiency was 95%. |
|---|---|
| Completeness Report: |
Data are believed to be complete |
| Conceptual Consistency: |
All chemical contaminant values have been rounded to three significant digits. To accommodate the wide range of values, all concentration values have been formatted to the thousandth unit (0.001). The actual precision is as listed below. Metals, variable ug/g; Butlytins 0.01 ng Sn/g; PAHs 0.1 ng/g; PCBs 0.01 ng/g; Pesticides 0.01 ng/g; DATA QUALITY ASSURANCE PROCEDURES Organic and Inorganic Contaminants - QA procedures include blanks, spiked samples, and standard reference materials with each batch of samples. Any batch failing to meet the specifications presented in Section 9.1 would be reanalyzed or rejected. Benthic taxonomy- At a minimum, 10 percent of all samples were resorted and recounted on a regular basis. Ten percent of samples were randomly selected and re-identified. A voucher collection composed of representative individuals of each species encountered in the project was accumulated and retained. |
Lineage
Process Steps
Process Step 1
| Description: |
DATA ACQUISITION/FIELD SAMPLING Sediment sampling procedures are described in the report available for download at http://ccma.nos.noaa.gov/about/coast/nsandt/download.aspx DATA PREPARATION AND SAMPLE PROCESSING Fields are arranged as follows: Sample Type; Field Holding; Lab Storage; Max Holding SEDIMENT Organic contaminants; Wet ice (4C); Freezer (-20C); 1 year Inorganic contaminants; Wet ice (4C); Freezer (-20C); 1 year Total organic Carbon; Wet ice (4C); Freezer (-20C); 1 year Grain size; Wet ice; (4C); Refrigerated (4C); 1 year TOXICITY BIOASSAY Whole sediment and porewater bioassays; Wet ice (4C); Refrigerated (4C); 2 weeks Organic extract (P450 and Microtox); Wet ice (4C); Freezer (-20C); 1 year BENTHOS Taxonomy; 10% buffered formalin; Transfer to 70% ethanol; Indefinitely |
|---|---|
| Process Date/Time: | 1995-01-01 00:00:00 |
Process Step 2
| Description: |
Chemicals with similar structural properties were summed and reported as "Totals" in addition to their individual measured concentrations. The components of these totals are as follows: Total DDT = sum of concentrations of ortho and para forms of parent and metabolites 2,4'DDE; 4,4'DDE; 2,4'DDD; 4,4'DDD; 2,4'DDT and 4,4'DDT. Total Chlordane = sum of concentrations of four compounds alpha-chlordane, trans-nonachlor, heptachlor, heptachlorepoxide. Total Dieldrin = sum of concentrations of two compounds aldrin and dieldrin. Total Butyl tin = sum of concentrations of parent compound and metabolites monobutyltin, dibutyltin, tributyltin, tetrabutyltin [concentrations are in terms of tin]. Total PCB = the sum of the concentrations of eighteen congeners: PCB8, PCB18, PCB28, PCB44, PCB52, PCB66, PCB101, PCB105, PCB118, PCB128, PCB138, PCB153, PCB170, PCB180, PCB187, PCB195, PCB206, and PCB209. Total low molecular weight (lmw) PAHs = sum of concentrations of twelve 2- and 3-ring PAH compounds: naphthalene, 2-methylnaphthalene, 1-methylnaphthalene, biphenyl, 2,6-dimethylnaphthalene, acenaphthene, acenaphthylene, 1,6,7-trimehtylnaphthalene, fluorine, phenanthrene, 1-methylphenanthrene, and anthracene. Total high molecular weight (hmw) PAHs = sum of concentrations of twelve 4-and more-ring PAH compounds: fluoranthene, pyrene, benz[a]anthracene, chrysene, benzo[b]fluorantene, benzo[k]fluoranthene, benzo[e]pyrene, benzo[a]pyrene, perylene, dibenzathracene, indeno[1,2,3-cd]pyrene, and benzo[ahi]perylene. Total PAH = low molecular weight PAHs plus high molecular weigh PAHs (sum of 24 PAH compound concentrations). Several numerical indices were chosen for analysis and interpretation of the macroinfaunal data. Infaunal abundance is reported as the total number of individuals per station and the total number of individuals per square meter (= density). Taxa richness is reported as the number of taxa represented in a given site location. Taxa diversity, which is often related to the ecological stability and environmental "quality" of the benthos, was estimated by the Shannon-Weiner Index (Shannon and Weaver, 1949). In order to quantify and compare the equitability in the fauna to the taxa diversity for a given area, Pielou's Evenness Index J' (Pielou, 1966) was calculated as J' = H'/lnS, where lnS = H'max, or the maximum possible diversity, when all taxa are represented by the same number of individuals; thus, J' = H' /H' max. |
|---|
Process Step 3
| Description: |
Project Related References:Pielou, E.C. 1966. The Measurement of Diversity in Different Types of Biological Collections. J. Theoretical Biology 13:131-144.Shannon, L.C. and W. Weaver. 1949. The Mathematical Theory of Communication. Univ. of Illinois Press, Urbana, Ill. 117 p. |
|---|
Catalog Details
| Catalog Item ID: | 39077 |
|---|---|
| GUID: | gov.noaa.nmfs.inport:39077 |
| Metadata Record Created By: | Tyler Christensen |
| Metadata Record Created: | 2017-04-05 12:50+0000 |
| Metadata Record Last Modified By: | SysAdmin InPortAdmin |
| Metadata Record Last Modified: | 2025-05-15 19:15+0000 |
| Metadata Record Published: | 2017-04-17 |
| Owner Org: | NCCOS |
| Metadata Publication Status: | Published Externally |
| Do Not Publish?: | N |
| Metadata Last Review Date: | 2017-04-17 |
| Metadata Review Frequency: | 1 Year |
| Metadata Next Review Date: | 2018-04-17 |
