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NWFSC Metadata Library > CB (Conservation Biology) Division > BPA genetic monitoring - BPA Genetic Monitoring... >

Little Sheep Creek steelhead

Entity (ENT)  |  Northwest Fisheries Science Center (NWFSC)
GUID: gov.noaa.nmfs.inport:51551  |  Updated: August 9, 2022  |  Published / External 

Item Identification

Title: Little Sheep Creek steelhead
Short Name: Little Sheep Creek steelhead
Status: Planned
Abstract:

This is a table of microsatellite genotypes for Little Sheep steelhead included in Berntson et al. 2011. Transactions of the American Fisheries Society 140:685-698. Each locus is represented by two alleles, 3 digits for each allele, where alleles are mobility/size determined, per standard published criteria. Loci are the SPAN suite, described in Blankenship et al. 2011. Transactions of the American Fisheries Society 140:665-684.

Entity Information

Entity Type: Spreadsheet
Active Version?: Yes
Schema Name: PARR
Description:

This is a table of microsatellite genotypes for Little Sheep steelhead included in Berntson et al. 2011. Transactions of the American Fisheries Society 140:685-698. Each locus is represented by two alleles, 3 digits for each allele, where alleles are mobility/size determined, per standard published criteria. Loci are the SPAN suite, described in Blankenship et al. 2011. Transactions of the American Fisheries Society 140:665-684.

Data Attributes

Attribute Summary

Rubric Score Primary Key? Name Type Description
100
 Sample_Number text A 5-digit accession number assigned by the NWFSC, followed by a 4-digit individual fish number.
100
 Locus_Ocl1_allele_1 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Ocl1_allele_2 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Ogo4_allele_1 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Ogo4_allele_2 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Omy1001_allele_1 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Omy1001_allele_2 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Omy7_allele_1 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Omy7_allele_2 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Omy77_allele_1 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Omy77_allele_2 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Ots1_allele_1 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Ots1_allele_2 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Ots100_allele_1 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Ots100_allele_2 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Ots4_allele_1 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Ots4_allele_2 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Oke4_allele_1 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Oke4_allele_2 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Oki23m_allele_1 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Oki23m_allele_2 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Omy1011_allele_1 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Omy1011_allele_2 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Ots3_allele_1 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Ots3_allele_2 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Ots506_allele_1 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Ots506_allele_2 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_p53_allele_1 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_p53_allele_2 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Ssa407_allele_1 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Locus_Ssa407_allele_2 text Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
100
 Collection_Year number Year that the fish was sampled.
100
 Collection_Date Date Date that the fish was sampled.
100
 Fin_Mark text Mark indicates if the fish is wild or natural in origin, or hatchery in origin.
100
 Sex text Sex of the fish, if known.
100
 Fork_Length_in_mm text Fork length of the fish. Units for values are Millimeters.
100
 River_Mile number River mile were the fish was captured. Units for values are Miles.
100
 Disposition text What happened to the fish, if it was an adult: passed over the weir to spawn, taken in as hatchery broodstock, etc.

Attribute Details

Sample_Number

CC ID: 729511
Seq. Order: 1
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

A 5-digit accession number assigned by the NWFSC, followed by a 4-digit individual fish number.
General Data Type: text

Locus_Ocl1_allele_1

CC ID: 729512
Seq. Order: 2
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Ocl1_allele_2

CC ID: 729513
Seq. Order: 3
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Ogo4_allele_1

CC ID: 729514
Seq. Order: 4
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Ogo4_allele_2

CC ID: 729515
Seq. Order: 5
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Omy1001_allele_1

CC ID: 729516
Seq. Order: 6
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Omy1001_allele_2

CC ID: 729517
Seq. Order: 7
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Omy7_allele_1

CC ID: 729518
Seq. Order: 8
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Omy7_allele_2

CC ID: 729519
Seq. Order: 9
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Omy77_allele_1

CC ID: 729520
Seq. Order: 10
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Omy77_allele_2

CC ID: 729521
Seq. Order: 11
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Ots1_allele_1

CC ID: 729522
Seq. Order: 12
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Ots1_allele_2

CC ID: 729523
Seq. Order: 13
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Ots100_allele_1

CC ID: 729524
Seq. Order: 14
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Ots100_allele_2

CC ID: 729525
Seq. Order: 15
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Ots4_allele_1

CC ID: 729526
Seq. Order: 16
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Ots4_allele_2

CC ID: 729527
Seq. Order: 17
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Oke4_allele_1

CC ID: 729528
Seq. Order: 18
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Oke4_allele_2

CC ID: 729529
Seq. Order: 19
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Oki23m_allele_1

CC ID: 729530
Seq. Order: 20
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Oki23m_allele_2

CC ID: 729531
Seq. Order: 21
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Omy1011_allele_1

CC ID: 729532
Seq. Order: 22
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Omy1011_allele_2

CC ID: 729533
Seq. Order: 23
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Ots3_allele_1

CC ID: 729534
Seq. Order: 24
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Ots3_allele_2

CC ID: 729535
Seq. Order: 25
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Ots506_allele_1

CC ID: 729536
Seq. Order: 26
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Ots506_allele_2

CC ID: 729537
Seq. Order: 27
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_p53_allele_1

CC ID: 729538
Seq. Order: 28
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_p53_allele_2

CC ID: 729539
Seq. Order: 29
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Ssa407_allele_1

CC ID: 729540
Seq. Order: 30
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Locus_Ssa407_allele_2

CC ID: 729541
Seq. Order: 31
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Microsatellite allele; each locus is represented by 2 alleles. Each allele is represented by 3 digits, and the value is based loosely on size of the fragment. Units for values are base-pairs.
General Data Type: text
Unit of Measure: base-pairs
Allowed Values: 000-500

Collection_Year

CC ID: 729542
Seq. Order: 32
Data Storage Type: number
Required: No
Primary Key: No
Status: Active
Description:

Year that the fish was sampled.
General Data Type: number

Collection_Date

CC ID: 729543
Seq. Order: 33
Data Storage Type: Date
Required: No
Primary Key: No
Status: Active
Description:

Date that the fish was sampled.
General Data Type: Date

Fin_Mark

CC ID: 729544
Seq. Order: 34
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Mark indicates if the fish is wild or natural in origin, or hatchery in origin.
General Data Type: text
Allowed Values: Ad (Ad-clipped hatchery fish), AdLV (ad-clipped and left ventrical-clipped hatchery fish), H (hatchery fish), UMH (unmarked hatchery fish), W (wild),

Sex

CC ID: 729545
Seq. Order: 35
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Sex of the fish, if known.
General Data Type: text
Allowed Values: M (Male) or F (Female)

Fork_Length_in_mm

CC ID: 729546
Seq. Order: 36
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Fork length of the fish. Units for values are Millimeters.
General Data Type: text
Unit of Measure: Millimeters
Allowed Values: 20-900, O (< 640 mm), U (< 640 mm)

River_Mile

CC ID: 729547
Seq. Order: 37
Data Storage Type: number
Required: No
Primary Key: No
Status: Active
Description:

River mile were the fish was captured. Units for values are Miles.
General Data Type: number
Unit of Measure: Miles
Allowed Values: 0-24

Disposition

CC ID: 729548
Seq. Order: 38
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

What happened to the fish, if it was an adult: passed over the weir to spawn, taken in as hatchery broodstock, etc.
General Data Type: text

Catalog Details

Catalog Item ID: 51551
GUID: gov.noaa.nmfs.inport:51551
Metadata Record Created By: Jeffrey W Cowen
Metadata Record Created: 2018-02-16 17:03+0000
Metadata Record Last Modified By: SysAdmin InPortAdmin
Metadata Record Last Modified: 2022-08-09 17:11+0000
Metadata Record Published: 2018-02-27
Owner Org: NWFSC
Metadata Publication Status: Published Externally
Do Not Publish?: N
Metadata Last Review Date: 2018-02-27
Metadata Review Frequency: 1 Year
Metadata Next Review Date: 2019-02-27