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Short Citation:
Northwest Fisheries Science Center, 2022: BPA genetic monitoring - BPA Genetic Monitoring of Snake River Chinook Salmon and Steelhead, https://www.fisheries.noaa.gov/inport/item/18054.

Item Identification

Title: BPA genetic monitoring - BPA Genetic Monitoring of Snake River Chinook Salmon and Steelhead
Short Name: BPA genetic monitoring (BPA Genetic Monitoring Project)
Status: Completed
Creation Date: 1989-08-01
Publication Date: 2018-02-15
Abstract:

This is a long-term (30-year) NWFSC Genetics and Evolution Program study to monitor the genetic characteristics and population dynamics of hatchery- and natural-origin Chinook salmon and steelhead in the Snake River Basin, which are both species listed as threatened under the US Endangered Species Act. Genetic tools are used to determine if naturally spawning hatchery fish are influencing the adaptive potential and viability of wild fish in the basin. This work involves long-term annual field work to collect DNA from threatened Chinook salmon and steelhead at numerous locations throughout the Snake and Salmon River Basin and analyze the genetic signatures from the collections in the context of a long-term historical baseline of hatchery production and natural variation in wild salmonid production there.

Initiated in 1989, this study monitors genetic changes associated with hatchery propagation in multiple Snake River sub-basins for Chinook salmon and steelhead. We also derive estimates of reproductive success for individual families and groups of fish. The information obtained from this study directly addresses a critical knowledge gap identified by comanagers, which is: under what conditions does hatchery supplementation provide a sustained contribution to natural production? Co-managers are ODFW, CTUIR, NPT, WDFW, IDFG, and SBT. This type of monitoring work is now an essential part of hatchery reform and the goal of using widespread hatchery propagation in recovery of natural populations.

Purpose:

Addresses Legal Mandate

Raw/field data, Time series (of types 1-3), Laboratory data

Notes:

Loaded by batch 4312, 02-01-2013 15:00

Supplemental Information:

Subject to Public Access to Research Results (PARR): Yes

Report: Monitoring and evaluating the genetic characteristics of supplemented salmon and steelhead. Annual report of activities and results from calendar year 2019.

Report: Monitoring and evaluating the genetic characteristics of supplemented salmon and steelhead. Rollup report of BiOp-related activities from calendar year 2019.

Keywords

Theme Keywords

Thesaurus Keyword
UNCONTROLLED
None artificial propagation
None hatchery
None salmon
None Snake River

Spatial Keywords

Thesaurus Keyword
UNCONTROLLED
None Manchester Research Station
None NWFSC Montlake
None Snake River Basin

Instrument Keywords

Thesaurus Keyword
UNCONTROLLED
None DNA Sequencer

Platform Keywords

Thesaurus Keyword
UNCONTROLLED
None Unknown Physical Collection Device

Physical Location

Organization: Northwest Fisheries Science Center
City: Seattle
State/Province: WA
Country: USA

Data Set Information

Data Set Scope Code: Data Set
Data Set Type: Spreadsheet
Data Presentation Form: Table (digital)

Support Roles

Data Steward

CC ID: 847819
Date Effective From: 2015-10-01
Date Effective To:
Contact (Person): Berntson, Ewann A
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
Email Address: Ewann.Berntson@noaa.gov
Phone: 360-871-8333

Distributor

CC ID: 847820
Date Effective From: 2015-10-01
Date Effective To:
Contact (Organization): Northwest Fisheries Science Center (NWFSC)
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
USA
Email Address: nmfs.nwfsc.metadata@noaa.gov
Phone: 206-860-3200
URL: NWFSC Home

Metadata Contact

CC ID: 847818
Date Effective From: 2015-10-01
Date Effective To:
Contact (Organization): Northwest Fisheries Science Center (NWFSC)
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
USA
Email Address: nmfs.nwfsc.metadata@noaa.gov
Phone: 206-860-3200
URL: NWFSC Home

Originator

CC ID: 847822
Date Effective From: 2015-10-01
Date Effective To:
Contact (Person): Berntson, Ewann A
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
Email Address: Ewann.Berntson@noaa.gov
Phone: 360-871-8333

Point of Contact

CC ID: 847821
Date Effective From: 2015-10-01
Date Effective To:
Contact (Person): Berntson, Ewann A
Address: 2725 Montlake Boulevard East
Seattle, WA 98112
Email Address: Ewann.Berntson@noaa.gov
Phone: 360-871-8333

Extents

Extent Group 1

Extent Group 1 / Geographic Area 1

CC ID: 847828
W° Bound: -122.5547
E° Bound: -122.5547
N° Bound: 47.569
S° Bound: 47.569
Description

Manchester Research Station

Extent Group 1 / Time Frame 1

CC ID: 847827
Time Frame Type: Continuing
Start: 1989-11-01

Extent Group 2

Extent Group 2 / Geographic Area 1

CC ID: 847831
W° Bound: -122.3062
E° Bound: -122.3062
N° Bound: 47.6449
S° Bound: 47.6449
Description

NWFSC Montlake: NWFSC Montlake, Seattle

Extent Group 2 / Time Frame 1

CC ID: 847830
Time Frame Type: Continuing
Start: 1989-11-01

Extent Group 3

Extent Group 3 / Geographic Area 1

CC ID: 847834
W° Bound: -122.5547
E° Bound: -122.3062
N° Bound: 47.6449
S° Bound: 47.569
Description

Snake River Basin: Snake River Basin, a Columbia River tributary

Extent Group 3 / Time Frame 1

CC ID: 847833
Time Frame Type: Continuing
Start: 1989-11-01

Access Information

Security Class: Unclassified
Data Access Procedure:

At this time, contact the Data Manager for information on obtaining access to this data set. In the near future, the NWFSC will strive to provide all data resources as a web service in order to meet the NOAA Data Access Policy Directive (https://nosc.noaa.gov/EDMC/PD.DA.php).

Data Access Constraints:

NA

Distribution Information

Distribution 1

CC ID: 847824
Start Date: 2018-02-15
End Date: Present
Download URL: https://www.webapps.nwfsc.noaa.gov/apex/parr/little_sheep_creek_steelhead/data/page/
Distributor: Northwest Fisheries Science Center (NWFSC) (2015-10-01 - Present)
File Name: Little Sheep Creek steelhead (RESTful)
Description:

This is a table of microsatellite genotypes for Little Sheep steelhead included in Berntson et al. 2011. Transactions of the American Fisheries Society 140:685-698. Each locus is represented by two alleles, 3 digits for each allele, where alleles are mobility/size determined, per standard published criteria. Loci are the SPAN suite, described in Blankenship et al. 2011. Transactions of the American Fisheries Society 140:665-684.

Distribution 2

CC ID: 847823
Start Date: 2018-02-15
End Date: Present
Download URL: https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/tables/table/little_sheep_creek_steelhead
Distributor: Northwest Fisheries Science Center (NWFSC) (2015-10-01 - Present)
File Name: Little Sheep Creek steelhead
Description:

This is a table of microsatellite genotypes for Little Sheep steelhead included in Berntson et al. 2011. Transactions of the American Fisheries Society 140:685-698. Each locus is represented by two alleles, 3 digits for each allele, where alleles are mobility/size determined, per standard published criteria. Loci are the SPAN suite, described in Blankenship et al. 2011. Transactions of the American Fisheries Society 140:665-684.

URLs

URL 1

CC ID: 847825
URL: https://www.webapps.nwfsc.noaa.gov/apex/parrdata/inventory/datasets/dataset/10654
Name: BPA genetic monitoring
URL Type:
Online Resource
File Resource Format: Web site
Description:

NWFSC Dataset Information page. Initiated in 1989, this study monitors genetic changes associated with hatchery propagation in multiple Snake River sub-basins for Chinook salmon and steelhead. We also derive estimates of reproductive success for individual families and groups of fish. The information obtained from this study directly addresses a critical knowledge gap identified by comanagers, which is: under what conditions does hatchery supplementation provide a sustained contribution to natural production? Co-managers are ODFW, CTUIR, NPT, WDFW, IDFG, and SBT. This type of monitoring work is now an essential part of hatchery reform and the goal of using widespread hatchery propagation in recovery of natural populations.

Technical Environment

Description:

Spreadsheet

Data Quality

Accuracy:

High

Quality Control Procedures Employed:

QA/QC genotypes run, elimination of fish missing too many genotypes, elimination of duplicate genotypes.

Data Management

Have Resources for Management of these Data Been Identified?: No
Approximate Percentage of Budget for these Data Devoted to Data Management: 5
Do these Data Comply with the Data Access Directive?: No
Is Access to the Data Limited Based on an Approved Waiver?: No
If Distributor (Data Hosting Service) is Needed, Please Indicate: No
Approximate Delay Between Data Collection and Dissemination: 0 days
If Delay is Longer than Latency of Automated Processing, Indicate Under What Authority Data Access is Delayed:

No Delay

Actual or Planned Long-Term Data Archive Location: Other
If World Data Center or Other, Specify: Idaho Department of Fish and Game
Approximate Delay Between Data Collection and Archiving: 365
How Will the Data Be Protected from Accidental or Malicious Modification or Deletion Prior to Receipt by the Archive?:

See FishGen.net website for details.

Lineage

Lineage Statement:

Genotype generation, plus genotype QA/QC.

Child Items

Rubric scores updated every 15m

Rubric Score Type Title
Entity Little Sheep Creek steelhead

Catalog Details

Catalog Item ID: 18054
GUID: gov.noaa.nmfs.inport:18054
Metadata Record Created By: SysAdmin InPortAdmin
Metadata Record Created: 2013-02-01 15:00+0000
Metadata Record Last Modified By: SysAdmin InPortAdmin
Metadata Record Last Modified: 2019-06-04 13:14+0000
Metadata Record Published: 2019-06-04
Owner Org: NWFSC
Metadata Publication Status: Published Externally
Do Not Publish?: N
Metadata Next Review Date: 2020-06-04