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NWFSC Metadata Library > CB (Conservation Biology) Division > Deep Sea Coral voucher sequence dataset - Ident... >

Deep Sea Corals PARR 02.21.18

Entity (ENT)  |  Northwest Fisheries Science Center (NWFSC)
GUID: gov.noaa.nmfs.inport:51593  |  Updated: August 9, 2022  |  Published / External 
Summary
Item Identification
Entity Info
Data Attributes
Catalog Details

Summary

Abstract

This is a table referencing DNA sequences generated from deep sea corals collected by a number of agencies. All sequences are published in one of two databases, and those accession numbers are included here. The Genbank Database can be accessed here: https://www.ncbi.nlm.nih.gov/genbank/. The National Coral Database can be accessed here: https://deepseacoraldata.noaa.gov/.

Description

This is a table referencing DNA sequences generated from deep sea corals collected by a number of agencies. All sequences are published in one of two databases, and those accession numbers are included here. The Genbank Database can be accessed here: https://www.ncbi.nlm.nih.gov/genbank/. The National Coral Database can be accessed here: https://deepseacoraldata.noaa.gov/.

Entity Information

Entity Type
Spreadsheet

Data Attribute / Type Description
Barcode or Agency ID
text 		Barcode or other identifier given to the specimen from the original agency doing the collection. Units for values are N/A.
Agency of Specimen Origin
text 		Agency responsible for the original specimen collection. Units for values are N/A.
Verified Species ID by Morphology
text 		Species identification determined by a taxonomic expert, based on morphology of the specimen. Units for values are N/A.
Morphologist of ID Designation
text 		Taxonomic expert responsible for the morphological identification. Units for values are N/A.
Genetic Species ID by DNA Sequence
text 		Species identification based on DNA sequence information. Units for values are N/A.
Database for Sequences
text 		Database(s) containing DNA sequence information from these specimens. Units for values are N/A.
Genbank Accession Number
text 		Accession number(s) for DNA sequences published in Genbank. Units for values are N/A.
National Coral Database Accession Number
text 		Accession number for DNA sequences included in the National Coral Database. Units for values are N/A.

Child Items

No Child Items for this record.

Contact Information

No contact information is available for this record.

Please contact the owner organization (NWFSC) for inquiries on this record.

Item Identification

Title: Deep Sea Corals PARR 02.21.18
Short Name: Deep Sea Corals PARR 02.21.18
Status: Planned
Abstract:

This is a table referencing DNA sequences generated from deep sea corals collected by a number of agencies. All sequences are published in one of two databases, and those accession numbers are included here. The Genbank Database can be accessed here: https://www.ncbi.nlm.nih.gov/genbank/. The National Coral Database can be accessed here: https://deepseacoraldata.noaa.gov/.

Entity Information

Entity Type: Spreadsheet
Active Version?: Yes
Schema Name: PARR
Description:

This is a table referencing DNA sequences generated from deep sea corals collected by a number of agencies. All sequences are published in one of two databases, and those accession numbers are included here. The Genbank Database can be accessed here: https://www.ncbi.nlm.nih.gov/genbank/. The National Coral Database can be accessed here: https://deepseacoraldata.noaa.gov/.

Data Attributes

Attribute Summary

Rubric Score Primary Key? Name Type Description
100
 Barcode or Agency ID text Barcode or other identifier given to the specimen from the original agency doing the collection. Units for values are N/A.
100
 Agency of Specimen Origin text Agency responsible for the original specimen collection. Units for values are N/A.
100
 Verified Species ID by Morphology text Species identification determined by a taxonomic expert, based on morphology of the specimen. Units for values are N/A.
100
 Morphologist of ID Designation text Taxonomic expert responsible for the morphological identification. Units for values are N/A.
100
 Genetic Species ID by DNA Sequence text Species identification based on DNA sequence information. Units for values are N/A.
100
 Database for Sequences text Database(s) containing DNA sequence information from these specimens. Units for values are N/A.
100
 Genbank Accession Number text Accession number(s) for DNA sequences published in Genbank. Units for values are N/A.
100
 National Coral Database Accession Number text Accession number for DNA sequences included in the National Coral Database. Units for values are N/A.

Attribute Details

Barcode or Agency ID

CC ID: 729503
Seq. Order: 1
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Barcode or other identifier given to the specimen from the original agency doing the collection. Units for values are N/A.
General Data Type: text
Unit of Measure: N/A
Allowed Values: N/A

Agency of Specimen Origin

CC ID: 729504
Seq. Order: 2
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Agency responsible for the original specimen collection. Units for values are N/A.
General Data Type: text
Unit of Measure: N/A
Allowed Values: N/A

Verified Species ID by Morphology

CC ID: 729505
Seq. Order: 3
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Species identification determined by a taxonomic expert, based on morphology of the specimen. Units for values are N/A.
General Data Type: text
Unit of Measure: N/A
Allowed Values: N/A

Morphologist of ID Designation

CC ID: 729506
Seq. Order: 4
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Taxonomic expert responsible for the morphological identification. Units for values are N/A.
General Data Type: text
Unit of Measure: N/A
Allowed Values: N/A

Genetic Species ID by DNA Sequence

CC ID: 729507
Seq. Order: 5
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Species identification based on DNA sequence information. Units for values are N/A.
General Data Type: text
Unit of Measure: N/A
Allowed Values: N/A

Database for Sequences

CC ID: 729508
Seq. Order: 6
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Database(s) containing DNA sequence information from these specimens. Units for values are N/A.
General Data Type: text
Unit of Measure: N/A
Allowed Values: N/A

Genbank Accession Number

CC ID: 729509
Seq. Order: 7
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Accession number(s) for DNA sequences published in Genbank. Units for values are N/A.
General Data Type: text
Unit of Measure: N/A
Allowed Values: N/A

National Coral Database Accession Number

CC ID: 729510
Seq. Order: 8
Data Storage Type: text
Required: No
Primary Key: No
Status: Active
Description:

Accession number for DNA sequences included in the National Coral Database. Units for values are N/A.
General Data Type: text
Unit of Measure: N/A
Allowed Values: N/A

Catalog Details

Catalog Item ID: 51593
GUID: gov.noaa.nmfs.inport:51593
Metadata Record Created By: Jeffrey W Cowen
Metadata Record Created: 2018-02-22 19:00+0000
Metadata Record Last Modified By: SysAdmin InPortAdmin
Metadata Record Last Modified: 2022-08-09 17:11+0000
Metadata Record Published: 2018-02-27
Owner Org: NWFSC
Metadata Publication Status: Published Externally
Do Not Publish?: N
Metadata Last Review Date: 2018-02-27
Metadata Review Frequency: 1 Year
Metadata Next Review Date: 2019-02-27