Metadata Rubric

100%

6 / 6

PIFSC Metadata Library > PIFSC Coral Reef Ecosystem Program (CREP) Metad... > PIFSC Publication > Vogetrader Long-Term Monitoring 12 years After... >

Vogetrader_Restoration_DataDictionary_2022

Entity (ENT) | Pacific Islands Fisheries Science Center (PIFSC)
GUID: gov.noaa.nmfs.inport:68078 | Updated: September 12, 2023 | Published / External

Item Identification

Title:	Vogetrader_Restoration_DataDictionary_2022
Short Name:	VogeTrader DataDict
Status:	Completed
Abstract:	On February 5, 2010, the cargo vessel M/V Vogetrader ran aground a shallow forereef in Oahu, Hawaii. In 2013, restoration efforts were implemented at the impact area, which included three types of restoration techniques: coral outplanting, rubble removal, passive restoration. In 2022, monitoring surveys were conducted at vessel grounding site to assess coral reef recovery trajectories and to compare the efficacy of the three restoration techniques. This resource includes the datasets and documentation of the 2022 monitoring surveys.

Entity Information

Entity Type:	Data Table
Active Version?:	Yes
Description:	This data dictionary describes columns across the five data files of this data package.

Data Attributes

Attribute Summary

	Name	Type	Description
100	Vogetrader_images_2022.zip	IMAGES	Photoquadrat imagery of the survey area; ten images per ten sites across various zones, habitats, and impact or reference sites. This source imagery was used for rubble cover analysis using the web tool CoralNet.
100	REGION_NAME	TEXT	The name of the region surveyed in the Pacific Islands region.
100	ISLAND	TEXT	Name of island or atoll surveyed in the Pacific Islands region (REGION_NAME).
100	DATE	DATE	Date of survey conducted in format YYYY-MMM-DD
100	SITE_CODE	TEXT	Unique identifier for each site. Identifier is defined as Zone_Habitat_Type e.g. IC_LS_I would be inner channel, lower scar, impact site. Zones include: IC = inner channel, MS = main scar, or SSF = southern scar fragment; Habitat includes: LS = lower scar, US = upper scar, or RF = reef flat; Type includes I = impact or R = reference
100	LATITUDE	NUMERIC	Latitude in decimal degrees, WGS84, for the given SITE_CODE only collected in 2022.
100	LONGITUDE	NUMERIC	Longitude in decimal degrees, WGS84 for the given SITE_CODE only collected in 2022.
100	ZONE	TEXT	Describes the zone that replicates were collected from. Zones include Main Scar, Inner Channel, and Southern Scar Fragments. Each zone consists of an impact and reference site.
100	HABITAT	TEXT	Describes the habitat type that data was collected from. For the Inner Channel zone, habitat types include Lower Slope (LS) and Upper Slope (US). For the Main Scar, habitat types include LS, US, and Reef Flat (RF). The Southern Scar Fragments consists only of RF habitat type.
100	TYPE	TEXT	Indicates whether data was collected from a reference or impact site.
100	TIME	TEXT	Indicates the time that data was collected in reference to restoration efforts. Times include Before, from the 2010 surveys during the initial damage assessment, and After, from the 2022 surveys.
100	SURVEY_YEAR	NUMBER	Describes the survey year. Survey years include 2010 (initial damage assessment) and 2022 (monitoring surveys).
100	REPLICATE	NUMBER	Defines the replicate within each zone, habitat, type, and time that data was collected for each survey. Ten quadrat replicates were performed at each site for coral demographic surveys; replicate numbers range from 1 to 10. They are unique to each quadrat e.g. all replicate 1 were in the same square meter quadrat. There are no replicates for coral outplant data as the the whole survey area was assessed.
100	TAXON	TEXT	Taxon identifier as a short code for the scientific name. For coral outplants, there are four taxa: PLOB (Porites lobata), PMEA (Pocillopora meandrina), PGRA (Pocillopora grandis) and MONT (Montipora spp.). For juvenile and adult coral surveys, a list of coral species is provided to define all taxon codes.
100	TOTAL	NUMBER	Total abundance of all coral species measured within each replicate plot during demographic surveys.
100	SIZE_CM	NUMBER	Maximum diameter of the coral outplants.
100	PERCENT_MORTALITY	NUMBER	Extent of partial mortality (0 to 100%) for coral outplants. Partial mortality was used to adjust SIZE_CM to maximum diameter of live coral tissue for each outplant.
100	SIZE	NUMBER	Describes the size class of each coral measured in the demographic surveys (non-outplant). Size classes include 1 (0.5 to <2cm), 2 (2cm to <5cm), 5 (5cm to <10cm), 10 (10cm to <20cm), 20 (20cm to <40cm), 40 (40cm to <80cm), 80 (80cm or greater).
100	JUVENILES_SOLID	NUMBER	Number of juvenile corals measured on stable reef framework within each replicate plot.
100	JUVENILES_RUBBLE	NUMBER	Number of juvenile corals measured on rubble reef framework within each replicate plot.
100	JUVENILES_TOTAL	NUMBER	Total number of juvenile corals measured within each replicate plot (calculated as the sum of juvenilesSolid and juvenilesRubble).
100	ANALYST	TEXT	Username of the person that annotated the images; for this project 'JTM' = John Morris
100	IMAGE_NAME	TEXT	Image name (REGION_PROGRAM_ISLAND_SITE) e.g. MHI_VT_Oahu_ICUS_R_10.JPG
100	X_POS	NUMERIC	X position of the analyzed point on the image.
100	Y_POS	NUMERIC	Y position of the analyzed point on the image.
100	LABEL	TEXT	Identification of taxa underlying points displayed by CoralNet during photoquadrat annotation for benthic cover data. Refer to coralnet_labelset_definitions for
100	LABEL_DESC	TEXT	Description of CoralNet LABEL as defined by CRED/ESD
100	LABEL_GROUP	TEXT	Functional group of LABEL as defined in CoralNet labelset by CRED/ESD

Name

Type

Description

100

Vogetrader_images_2022.zip

IMAGES

Photoquadrat imagery of the survey area; ten images per ten sites across various zones, habitats, and impact or reference sites. This source imagery was used for rubble cover analysis using the web tool CoralNet.

100

REGION_NAME

TEXT

The name of the region surveyed in the Pacific Islands region.

100

ISLAND

TEXT

Name of island or atoll surveyed in the Pacific Islands region (REGION_NAME).

100

DATE

Date of survey conducted in format YYYY-MMM-DD

100

SITE_CODE

TEXT

Unique identifier for each site. Identifier is defined as Zone_Habitat_Type e.g. IC_LS_I would be inner channel, lower scar, impact site. Zones include: IC = inner channel, MS = main scar, or SSF = southern scar fragment; Habitat includes: LS = lower scar, US = upper scar, or RF = reef flat; Type includes I = impact or R = reference

100

LATITUDE

NUMERIC

Latitude in decimal degrees, WGS84, for the given SITE_CODE only collected in 2022.

100

LONGITUDE

NUMERIC

Longitude in decimal degrees, WGS84 for the given SITE_CODE only collected in 2022.

100

ZONE

TEXT

Describes the zone that replicates were collected from. Zones include Main Scar, Inner Channel, and Southern Scar Fragments. Each zone consists of an impact and reference site.

100

HABITAT

TEXT

Describes the habitat type that data was collected from. For the Inner Channel zone, habitat types include Lower Slope (LS) and Upper Slope (US). For the Main Scar, habitat types include LS, US, and Reef Flat (RF). The Southern Scar Fragments consists only of RF habitat type.

100

TYPE

TEXT

Indicates whether data was collected from a reference or impact site.

100

TIME

TEXT

Indicates the time that data was collected in reference to restoration efforts. Times include Before, from the 2010 surveys during the initial damage assessment, and After, from the 2022 surveys.

100

SURVEY_YEAR

NUMBER

Describes the survey year. Survey years include 2010 (initial damage assessment) and 2022 (monitoring surveys).

100

REPLICATE

NUMBER

Defines the replicate within each zone, habitat, type, and time that data was collected for each survey. Ten quadrat replicates were performed at each site for coral demographic surveys; replicate numbers range from 1 to 10. They are unique to each quadrat e.g. all replicate 1 were in the same square meter quadrat. There are no replicates for coral outplant data as the the whole survey area was assessed.

100

TAXON

TEXT

Taxon identifier as a short code for the scientific name. For coral outplants, there are four taxa: PLOB (Porites lobata), PMEA (Pocillopora meandrina), PGRA (Pocillopora grandis) and MONT (Montipora spp.). For juvenile and adult coral surveys, a list of coral species is provided to define all taxon codes.

100

TOTAL

NUMBER

Total abundance of all coral species measured within each replicate plot during demographic surveys.

100

SIZE_CM

NUMBER

Maximum diameter of the coral outplants.

100

PERCENT_MORTALITY

NUMBER

Extent of partial mortality (0 to 100%) for coral outplants. Partial mortality was used to adjust SIZE_CM to maximum diameter of live coral tissue for each outplant.

100

SIZE

NUMBER

Describes the size class of each coral measured in the demographic surveys (non-outplant). Size classes include 1 (0.5 to <2cm), 2 (2cm to <5cm), 5 (5cm to <10cm), 10 (10cm to <20cm), 20 (20cm to <40cm), 40 (40cm to <80cm), 80 (80cm or greater).

100

JUVENILES_SOLID

NUMBER

Number of juvenile corals measured on stable reef framework within each replicate plot.

100

JUVENILES_RUBBLE

NUMBER

Number of juvenile corals measured on rubble reef framework within each replicate plot.

100

JUVENILES_TOTAL

NUMBER

Total number of juvenile corals measured within each replicate plot (calculated as the sum of juvenilesSolid and juvenilesRubble).

100

ANALYST

TEXT

Username of the person that annotated the images; for this project 'JTM' = John Morris

100

IMAGE_NAME

TEXT

Image name (REGION_PROGRAM_ISLAND_SITE) e.g. MHI_VT_Oahu_ICUS_R_10.JPG

100

X_POS

NUMERIC

X position of the analyzed point on the image.

100

Y_POS

NUMERIC

Y position of the analyzed point on the image.

100

LABEL

TEXT

Identification of taxa underlying points displayed by CoralNet during photoquadrat annotation for benthic cover data. Refer to coralnet_labelset_definitions for

100

LABEL_DESC

TEXT

Description of CoralNet LABEL as defined by CRED/ESD

100

LABEL_GROUP

TEXT

Functional group of LABEL as defined in CoralNet labelset by CRED/ESD

Attribute Details

Vogetrader_images_2022.zip

CC ID: 1264515

Seq. Order:	1
Data Storage Type:	IMAGES
Required:	No
Primary Key:	No
Status:	Active
Description:	Photoquadrat imagery of the survey area; ten images per ten sites across various zones, habitats, and impact or reference sites. This source imagery was used for rubble cover analysis using the web tool CoralNet.

REGION_NAME

CC ID: 1264098

Seq. Order:	2
Data Storage Type:	TEXT
Required:	No
Primary Key:	No
Status:	Active
Description:	The name of the region surveyed in the Pacific Islands region.

ISLAND

CC ID: 1264099

Seq. Order:	2
Data Storage Type:	TEXT
Required:	No
Primary Key:	No
Status:	Active
Description:	Name of island or atoll surveyed in the Pacific Islands region (REGION_NAME).

DATE

CC ID: 1264514

Seq. Order:	2
Data Storage Type:	DATE
Required:	No
Primary Key:	No
Status:	Active
Description:	Date of survey conducted in format YYYY-MMM-DD

SITE_CODE

CC ID: 1236908

Seq. Order:	3
Data Storage Type:	TEXT
Required:	No
Primary Key:	No
Status:	Active
Description:	Unique identifier for each site. Identifier is defined as Zone_Habitat_Type e.g. IC_LS_I would be inner channel, lower scar, impact site. Zones include: IC = inner channel, MS = main scar, or SSF = southern scar fragment; Habitat includes: LS = lower scar, US = upper scar, or RF = reef flat; Type includes I = impact or R = reference

LATITUDE

CC ID: 1264100

Seq. Order:	4
Data Storage Type:	NUMERIC
Required:	No
Primary Key:	No
Status:	Active
Description:	Latitude in decimal degrees, WGS84, for the given SITE_CODE only collected in 2022.

LONGITUDE

CC ID: 1264101

Seq. Order:	5
Data Storage Type:	NUMERIC
Required:	No
Primary Key:	No
Status:	Active
Description:	Longitude in decimal degrees, WGS84 for the given SITE_CODE only collected in 2022.

ZONE

CC ID: 1187921

Seq. Order:	6
Data Storage Type:	TEXT
Required:	No
Primary Key:	No
Status:	Active
Description:	Describes the zone that replicates were collected from. Zones include Main Scar, Inner Channel, and Southern Scar Fragments. Each zone consists of an impact and reference site.
General Data Type:	Character
Allowed Values:	Inner channel, Main scar, Southern scar fragments

HABITAT

CC ID: 1229057

Seq. Order:	7
Data Storage Type:	TEXT
Required:	No
Primary Key:	No
Status:	Active
Description:	Describes the habitat type that data was collected from. For the Inner Channel zone, habitat types include Lower Slope (LS) and Upper Slope (US). For the Main Scar, habitat types include LS, US, and Reef Flat (RF). The Southern Scar Fragments consists only of RF habitat type.
Allowed Values:	LS, US, RF,

TYPE

CC ID: 1229058

Seq. Order:	8
Data Storage Type:	TEXT
Required:	No
Primary Key:	No
Status:	Active
Description:	Indicates whether data was collected from a reference or impact site.
Allowed Values:	Reference, Impact

TIME

CC ID: 1229059

Seq. Order:	9
Data Storage Type:	TEXT
Required:	No
Primary Key:	No
Status:	Active
Description:	Indicates the time that data was collected in reference to restoration efforts. Times include Before, from the 2010 surveys during the initial damage assessment, and After, from the 2022 surveys.
Allowed Values:	Before, After

SURVEY_YEAR

CC ID: 1236969

Seq. Order:	10
Data Storage Type:	NUMBER
Required:	No
Primary Key:	No
Status:	Active
Description:	Describes the survey year. Survey years include 2010 (initial damage assessment) and 2022 (monitoring surveys).

REPLICATE

CC ID: 1229060

Seq. Order:	11
Data Storage Type:	NUMBER
Required:	No
Primary Key:	No
Status:	Active
Description:	Defines the replicate within each zone, habitat, type, and time that data was collected for each survey. Ten quadrat replicates were performed at each site for coral demographic surveys; replicate numbers range from 1 to 10. They are unique to each quadrat e.g. all replicate 1 were in the same square meter quadrat. There are no replicates for coral outplant data as the the whole survey area was assessed.

TAXON

CC ID: 1236972

Seq. Order:	11
Data Storage Type:	TEXT
Required:	No
Primary Key:	No
Status:	Active
Description:	Taxon identifier as a short code for the scientific name. For coral outplants, there are four taxa: PLOB (Porites lobata), PMEA (Pocillopora meandrina), PGRA (Pocillopora grandis) and MONT (Montipora spp.). For juvenile and adult coral surveys, a list of coral species is provided to define all taxon codes.

TOTAL

CC ID: 1236967

Seq. Order:	12
Data Storage Type:	NUMBER
Required:	No
Primary Key:	No
Status:	Active
Description:	Total abundance of all coral species measured within each replicate plot during demographic surveys.

SIZE_CM

CC ID: 1236970

Seq. Order:	13
Data Storage Type:	NUMBER
Required:	No
Primary Key:	No
Status:	Active
Description:	Maximum diameter of the coral outplants.

PERCENT_MORTALITY

CC ID: 1236971

Seq. Order:	13
Data Storage Type:	NUMBER
Required:	No
Primary Key:	No
Status:	Active
Description:	Extent of partial mortality (0 to 100%) for coral outplants. Partial mortality was used to adjust SIZE_CM to maximum diameter of live coral tissue for each outplant.

SIZE

CC ID: 1236968

Seq. Order:	14
Data Storage Type:	NUMBER
Required:	No
Primary Key:	No
Status:	Active
Description:	Describes the size class of each coral measured in the demographic surveys (non-outplant). Size classes include 1 (0.5 to <2cm), 2 (2cm to <5cm), 5 (5cm to <10cm), 10 (10cm to <20cm), 20 (20cm to <40cm), 40 (40cm to <80cm), 80 (80cm or greater).

JUVENILES_SOLID

CC ID: 1236975

Seq. Order:	14
Data Storage Type:	NUMBER
Required:	No
Primary Key:	No
Status:	Active
Description:	Number of juvenile corals measured on stable reef framework within each replicate plot.

JUVENILES_RUBBLE

CC ID: 1236976

Seq. Order:	15
Data Storage Type:	NUMBER
Required:	No
Primary Key:	No
Status:	Active
Description:	Number of juvenile corals measured on rubble reef framework within each replicate plot.

JUVENILES_TOTAL

CC ID: 1236977

Seq. Order:	16
Data Storage Type:	NUMBER
Required:	No
Primary Key:	No
Status:	Active
Description:	Total number of juvenile corals measured within each replicate plot (calculated as the sum of juvenilesSolid and juvenilesRubble).

ANALYST

CC ID: 1264102

Seq. Order:	30
Data Storage Type:	TEXT
Required:	No
Primary Key:	No
Status:	Active
Description:	Username of the person that annotated the images; for this project 'JTM' = John Morris

IMAGE_NAME

CC ID: 1264103

Seq. Order:	31
Data Storage Type:	TEXT
Required:	No
Primary Key:	No
Status:	Active
Description:	Image name (REGION_PROGRAM_ISLAND_SITE) e.g. MHI_VT_Oahu_ICUS_R_10.JPG

X_POS

CC ID: 1264104

Seq. Order:	32
Data Storage Type:	NUMERIC
Required:	No
Primary Key:	No
Status:	Active
Description:	X position of the analyzed point on the image.

Y_POS

CC ID: 1264105

Seq. Order:	33
Data Storage Type:	NUMERIC
Required:	No
Primary Key:	No
Status:	Active
Description:	Y position of the analyzed point on the image.

LABEL

CC ID: 1264106

Seq. Order:	34
Data Storage Type:	TEXT
Required:	No
Primary Key:	No
Status:	Active
Description:	Identification of taxa underlying points displayed by CoralNet during photoquadrat annotation for benthic cover data. Refer to coralnet_labelset_definitions for

LABEL_DESC

CC ID: 1264107

Seq. Order:	35
Data Storage Type:	TEXT
Required:	No
Primary Key:	No
Status:	Active
Description:	Description of CoralNet LABEL as defined by CRED/ESD

LABEL_GROUP

CC ID: 1264108

Seq. Order:	36
Data Storage Type:	TEXT
Required:	No
Primary Key:	No
Status:	Active
Description:	Functional group of LABEL as defined in CoralNet labelset by CRED/ESD

Catalog Details

Catalog Item ID:	68078
GUID:	gov.noaa.nmfs.inport:68078
Metadata Record Created By:	Lori H Luers
Metadata Record Created:	2022-10-25 00:07+0000
Metadata Record Last Modified By:	Lori H Luers
Metadata Record Last Modified:	2023-09-12 22:57+0000
Metadata Record Published:	2023-09-12
Owner Org:	PIFSC
Metadata Publication Status:	Published Externally
Do Not Publish?:	N
Metadata Review Frequency:	1 Year